Non-Coding RNA Search

Ss1.1-Mixc-0033i06.5

Sequence:


               
               CACCAAGTGGGCAGAGGCTCACGTGCCCAAAGCCTGGGCCTGCTCGGTCACTAGCTGTCA
CGAGTGAGGTCTAAATGGCACACAGCCTCACCGTGTACTTGGCATTGGCTATGGCTGGTT
GTGCAGCTACGTCGGTGTGGGGGTGGGGGGCGAAGTCTCAGACGCCAGGGCCACGCAACC
TACACCGGTCACCGCCCGCCCTCCACAGCGAAGGCTCCCTTCCTCTGGCGGAGCCCCCGC
ACAAGCTGGCACACCTGGTCCTGCAGGGCACACAGGTGGGGACACAGCTGTCACCTGTTC
CACAGGGCCCAGGCTGCCGGTTCAGCTGTACCGTGAGGTCCGTCCCCACGAGGCTCATTC
CCTTAGTGCGCTGGCCCTGCGCAGCTTCCCTCCCCACTTACTACTGACGCGCCGTGAAAG
CCCGAGGCTCAGGGGCGCGGCCTGTGCCCCAGCACCTGAGAGCGGGCGGCGGTGGCCCCG
GGCAGTGCCAGCCGGTGGTGGCCGCCCTGCCCTTTGAGATGCTTTCGTTGACTCTCTCTT
CCTCAAACCAAGCCAAACAACAAAGGAAACGCACACAACTCAGACTTGAAAGGGATCATA
TGCTACTAGTTTGTACTAAGTTTTTTCAGGAGAGGGGAATAAATGTGTATATATATGCAA
TCTATTTTTGCACTGTTTTCTTACTGTCAGGGAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCAAGTGGGCAGAGGCTCACGTGCCCAAAGCCTGGGCCTGCTCGGTCACTAGCTGTCA
CGAGTGAGGTCTAAATGGCACACAGCCTCACCGTGTACTTGGCATTGGCTATGGCTGGTT
GTGCAGCTACGTCGGTGTGGGGGTGGGGGGCGAAGTCTCAGACGCCAGGGCCACGCAACC
TACACCGGTCACCGCCCGCCCTCCACAGCGAAGGCTCCCTTCCTCTGGCGGAGCCCCCGC
ACAAGCTGGCACACCTGGTCCTGCAGGGCACACAGGTGGGGACACAGCTGTCACCTGTTC
CACAGGGCCCAGGCTGCCGGTTCAGCTGTACCGTGAGGTCCGTCCCCACGAGGCTCATTC
CCTTAGTGCGCTGGCCCTGCGCAGCTTCCCTCCCCACTTACTACTGACGCGCCGTGAAAG
CCCGAGGCTCAGGGGCGCGGCCTGTGCCCCAGCACCTGAGAGCGGGCGGCGGTGGCCCCG
GGCAGTGCCAGCCGGTGGTGGCCGCCCTGCCCTTTGAGATGCTTTCGTTGACTCTCTCTT
CCTCAAACCAAGCCAAACAACAAAGGAAACGCACACAACTCAGACTTGAAAGGGATCATA
TGCTACTAGTTTGTACTAAGTTTTTTCAGGAGAGGGGAATAAATGTGTATATATATGCAA
TCTATTTTTGCACTGTTTTCTTACTGTCAGGGAGTG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               494-696, gnl|bosTau2|chr20 (42843966-42844167)
               

               
               494-696, gnl|Hg17|chr5 (713515-713278)
               

               
               494-696, gnl|Mm7|chr13 (70968087-70968288)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               494-696, gnl|bosTau2|chr20 (42843966-42844167)
               

               
               494-696, gnl|Hg17|chr5 (713515-713278)
               

               
               494-696, gnl|Mm7|chr13 (70968087-70968288)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hyp (0.285673)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               pla (0.133672)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               pla (0.133672)

	494-696, gnl\|bosTau2\|chr20 (42843966-42844167)
	494-696, gnl\|Hg17\|chr5 (713515-713278)
	494-696, gnl\|Mm7\|chr13 (70968087-70968288)

	hyp (0.285673)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	pla (0.133672)