Ss1.1-Mixc-0033i08.3.5
|
TTTGCCTCCATTATGCATACTTTTTTTTTTTTTTTAAAGTGATCAAGAGGAGGAAAGGAG
GTGATGCTCTGGAGTAAGTAAGTTAACAGCATTCCTGAGAACTTAAAACAGATCACTCCA
GCACTCAAAGCTTAAATGTTTATTTGCAAACCATGAAGAGTTTTACCTTAATAATGTGGA
TCAAATGGATAAGAACAAAGCTTAACTTATAAAAGCTTTCATAGGTACCAGCAGGGGTTT
AAGTAGGTCTACAAAGGTTTTTGAACATTTTAAGCATTTCTACCATATACAAAACTGAAA
CGTCATGAGGGAGCTAAATTAATTAGAAAGTAAATGGTCATTTATTTCATCCAGCACAAT
TTAAGGTATATTTGTTGGTATATCTGGTCAAATGTCGTAATTAACAAAGGGGATTTTAAA
CTCCAAAATTAATGAAGAACACTGACTAATGAGCTAAATAATGGTATTGGAGAATTTGTT
TCCTGCTATTTGAAAGAAATTATTGCTTCATTGCTAGTTTGTATTTCTAAATTATCTTAC
ATAGTCATAGGCTCTGCTGTGCTTTGTAACTGAGTTTCTAAATATAGATGTTAGTTTACT
GTATGATTGCAATATTTATTTTCAACTATGCTTGTCTTTAAAATTGCTTGAGGAAAAATG
GTTGTAATAATTTTTGCTACAGAAAAGCCACCTGGTACAATTTATCTCATAAAGTTTGTT
TTAAATTTTAAACTATAACTTTGTTCAGGAGAGGCTTTTGCAATGATAGCAGAGAATTTA
TGCAAATGGACAGTTAGTTATTGAGGTTCTTGTTGAAATGAACTTGCCATTTGATGATAT
GTACAGCTGTACCCTTGGGTCCTTTCCAGCTTATTTTCATAGACTAGCAGTTTGATCTGT
TAAACAGTACTAGTTCAAGAAACTAAGGTTGTTGTATTCACCTGGAGACATCTTTTATTC
ATATCCTTCAAGTGGGTGTTTGGCACAAGGAGGATAAACTTACGTGACCCACTTGAATGA
CTGATAGAATAACGTTGACATTATGAAAACTATACTTAGTGAAATGTCAGATGAAAGTAA
CTGATGATTGAATAAAATTTTTTTGTATTAAAGGAATGGGAAAGGAATACATGAATTTGT
TAATAAAGCACCATGATCTGCATAAGATGAACTGTTGCATAAAGATCTAAGGAAATAAAG
AAAATTTTAAAACAGGGTAGTCTTAAAATTTTAGTTACATAGCAGTTCAGAAAGTACTGT
AGTCAGTTTTTAAACCTTTTTGATAACTAATGTACAAACATGACAAATCATCTCCGAATA
TGAATTTTAATGCCAACACAACAATGAAATGCAAATATACTTTTAACAACTCCAATAAAA
TAAAATTAAGATTTCTAGGTTTTACCCCAGCTTGCTGAATCTCTGCAGGGTGGGCCGCAG
AACTGCAATTTAACCACCTGGGTGGGTGATTCTTGGGCATTCTAAAATTTAGGAACTGAT
AGAGGAATTACAAAGGGGTACCCTTTCCTCTGTCTTCATGAACAGCTGTGGAACCAACTC
AGATCTCTTACTAGCCAGAAAGGACTCATAGGGATGGGAACCAATCAGAGGAAGGCAGAA
ATTGATATTTACTAGGCACCTACTTGCCTGCCTGGCACGGTCCACACATTCTCTGATTCA
GTCAGTGTGAGGAAAGTATCTTTATTCCTTGTTAAAAAAATATGGAACATGCTAACTTTC
AATGTTAGTTGAATTTCCCATGTCACTTCAGAATTAGTGTAAATCACATCCTCTCCAGCT
TATGTCCAGAAACAAAGGGGACCACTCAATGATTAGTCTTTTTTTTAAATGATTTATTAC
ATTAAGACCTCATTTCCTTTTTTTTAGTTTTTATTTTTTGCTTTTTAGGGCCAAACTTGT
GGCATATGGAAATTCCCTGGCTAGGGTACAGCTGCTGGCCTATGCACATATGCAGCAAGG
CAGGATCCAAGTTGTGCCTGTGACCTACACCATAACTGATGGCAACGTCAGATCCTTAAC
CCCTTGAGTGAGGCCAGGGATTGAACCCAAGTCTTTATGGTTACTAGTCGGGTTCATAGC
CCTCTGAGCCACAACGGAACCCCTCAATGATTAGTCTTTAATTTTGCTGTGGGTATTAGT
ACTGCCTGAATGCTTGATTTACCAGGCTGTGTGACTTGAGCTCACTGGAAATCTAAGCGA
TTGTATTTATTTTGGCAGCTAATTACATTTTGTCACAGAAATGAATTTATACACAAATTG
TTTAAAAGAAATAATGTAATTTTGTTCTTAGAGCCTTTTTCAGAGGAAATGAAATTTGAC
AGTGTTTTGTGTAAGGATATCTCCCCCTGCTATGTTGTTATTTTTGAATGTCTAAAATTT
TATTTATAGGAAGATATGAGTAAGAATGCAAGAATA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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TTTGCCTCCATTATGCATACTTTTTTTTTTTTTTTAAAGTGATCAAGAGGAGGAAAGGAG
GTGATGCTCTGGAGTAAGTAAGTTAACAGCATTCCTGAGAACTTAAAACAGATCACTCCA
GCACTCAAAGCTTAAATGTTTATTTGCAAACCATGAAGAGTTTTACCTTAATAATGTGGA
TCAAATGGATAAGAACAAAGCTTAACTTATAAAAGCTTTCATAGGTACCAGCAGGGGTTT
AAGTAGGTCTACAAAGGTTTTTGAACATTTTAAGCATTTCTACCATATACAAAACTGAAA
CGTCATGAGGGAGCTAAATTAATTAGAAAGTAAATGGTCATTTATTTCATCCAGCACAAT
TTAAGGTATATTTGTTGGTATATCTGGTCAAATGTCGTAATTAACAAAGGGGATTTTAAA
CTCCAAAATTAATGAAGAACACTGACTAATGAGCTAAATAATGGTATTGGAGAATTTGTT
TCCTGCTATTTGAAAGAAATTATTGCTTCATTGCTAGTTTGTATTTCTAAATTATCTTAC
ATAGTCATAGGCTCTGCTGTGCTTTGTAACTGAGTTTCTAAATATAGATGTTAGTTTACT
GTATGATTGCAATATTTATTTTCAACTATGCTTGTCTTTAAAATTGCTTGAGGAAAAATG
GTTGTAATAATTTTTGCTACAGAAAAGCCACCTGGTACAATTTATCTCATAAAGTTTGTT
TTAAATTTTAAACTATAACTTTGTTCAGGAGAGGCTTTTGCAATGATAGCAGAGAATTTA
TGCAAATGGACAGTTAGTTATTGAGGTTCTTGTTGAAATGAACTTGCCATTTGATGATAT
GTACAGCTGTACCCTTGGGTCCTTTCCAGCTTATTTTCATAGACTAGCAGTTTGATCTGT
TAAACAGTACTAGTTCAAGAAACTAAGGTTGTTGTATTCACCTGGAGACATCTTTTATTC
ATATCCTTCAAGTGGGTGTTTGGCACAAGGAGGATAAACTTACGTGACCCACTTGAATGA
CTGATAGAATAACGTTGACATTATGAAAACTATACTTAGTGAAATGTCAGATGAAAGTAA
CTGATGATTGAATAAAATTTTTTTGTATTAAAGGAATGGGAAAGGAATACATGAATTTGT
TAATAAAGCACCATGATCTGCATAAGATGAACTGTTGCATAAAGATCTAAGGAAATAAAG
AAAATTTTAAAACAGGGTAGTCTTAAAATTTTAGTTACATAGCAGTTCAGAAAGTACTGT
AGTCAGTTTTTAAACCTTTTTGATAACTAATGTACAAACATGACAAATCATCTCCGAATA
TGAATTTTAATGCCAACACAACAATGAAATGCAAATATACTTTTAACAACTCCAATAAAA
TAAAATTAAGATTTCTAGGTTTTACCCCAGCTTGCTGAATCTCTGCAGGGTGGGCCGCAG
AACTGCAATTTAACCACCTGGGTGGGTGATTCTTGGGCATTCTAAAATTTAGGAACTGAT
AGAGGAATTACAAAGGGGTACCCTTTCCTCTGTCTTCATGAACAGCTGTGGAACCAACTC
AGATCTCTTACTAGCCAGAAAGGACTCATAGGGATGGGAACCAATCAGAGGAAGGCAGAA
ATTGATATTTACTAGGCACCTACTTGCCTGCCTGGCACGGTCCACACATTCTCTGATTCA
GTCAGTGTGAGGAAAGTATCTTTATTCCTTGTTAAAAAAATATGGAACATGCTAACTTTC
AATGTTAGTTGAATTTCCCATGTCACTTCAGAATTAGTGTAAATCACATCCTCTCCAGCT
TATGTCCAGAAACAAAGGGGACCACTCAATGATTAGTCTTTTTTTTAAATGATTTATTAC
ATTAAGACCTCATTTCCTTTTTTTTAGTTTTTATTTTTTGCTTTTTAGGGCCAAACTTGT
GGCATATGGAAATTCCCTGGCTAGGGTACAGCTGCTGGCCTATGCACATATGCAGCAAGG
CAGGATCCAAGTTGTGCCTGTGACCTACACCATAACTGATGGCAACGTCAGATCCTTAAC
CCCTTGAGTGAGGCCAGGGATTGAACCCAAGTCTTTATGGTTACTAGTCGGGTTCATAGC
CCTCTGAGCCACAACGGAACCCCTCAATGATTAGTCTTTAATTTTGCTGTGGGTATTAGT
ACTGCCTGAATGCTTGATTTACCAGGCTGTGTGACTTGAGCTCACTGGAAATCTAAGCGA
TTGTATTTATTTTGGCAGCTAATTACATTTTGTCACAGAAATGAATTTATACACAAATTG
TTTAAAAGAAATAATGTAATTTTGTTCTTAGAGCCTTTTTCAGAGGAAATGAAATTTGAC
AGTGTTTTGTGTAAGGATATCTCCCCCTGCTATGTTGTTATTTTTGAATGTCTAAAATTT
TATTTATAGGAAGATATGAGTAAGAATGCAAGAATA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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24-363, gnl|bosTau2|chr5 (40857077-40856761) |
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24-363, gnl|Hg17|chr12 (105869113-105869436) |
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24-363, gnl|Mm7|chr10 (84657894-84658200) |
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369-1841, gnl|bosTau2|chr5 (40856536-40855074) |
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369-1841, gnl|Hg17|chr12 (105869440-105870916) |
| |
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2116-2435, gnl|bosTau2|chr5 (40855097-40854771) |
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2116-2435, gnl|canFam2|chr10 (34922495-34922094) |
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2116-2435, gnl|echTel1|scaffold_280653 (769-389) |
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2116-2435, gnl|hg17|chr12 (105870676-105871098) |
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2116-2435, gnl|Hg17|chr12 (105870893-105871221) |
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2116-2435, gnl|loxAfr1|scaffold_40144 (13243-13672) |
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2116-2435, gnl|oryCun1|scaffold_170536 (8369-7977) |
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2116-2435, gnl|panTro1|chr10 (108378522-108378940) |
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2116-2435, gnl|rheMac2|chr11 (108046277-108046699) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
24-363, gnl|bosTau2|chr5 (40857077-40856761) |
|
24-363, gnl|Hg17|chr12 (105869113-105869436) |
|
24-363, gnl|Mm7|chr10 (84657894-84658200) |
| |
|
369-1841, gnl|bosTau2|chr5 (40856536-40855074) |
|
369-1841, gnl|Hg17|chr12 (105869440-105870916) |
| |
|
2116-2435, gnl|bosTau2|chr5 (40855097-40854771) |
|
2116-2435, gnl|canFam2|chr10 (34922495-34922094) |
|
2116-2435, gnl|echTel1|scaffold_280653 (769-389) |
|
2116-2435, gnl|hg17|chr12 (105870676-105871098) |
|
2116-2435, gnl|Hg17|chr12 (105870893-105871221) |
|
2116-2435, gnl|loxAfr1|scaffold_40144 (13243-13672) |
|
2116-2435, gnl|oryCun1|scaffold_170536 (8369-7977) |
|
2116-2435, gnl|panTro1|chr10 (108378522-108378940) |
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2116-2435, gnl|rheMac2|chr11 (108046277-108046699) |
|
vin (0.997672) |
|
tbr (0.616713) |
|
sin (0.524843) |
|
spl (0.429553) |
|
ste (0.405625) |
|
ova (0.387397) |
|
sme (0.305437) |
|
ret (0.257467) |
|
sug (0.254582) |
|
eru (0.240096) |
|
mgp (0.230681) |
|
tes (0.207814) |
|
aor (0.195274) |
|
mgm (0.180343) |
|
gul (0.177588) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
mga (0.160205) |
|
fco (0.157208) |
|
ctl (0.153069) |
|
ski (0.146735) |
|
lin (0.145603) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
pla (0.133672) |
|
thg (0.126791) |
|
ese (0.126502) |
|
tra (0.123092) |
|
ldo (0.0970026) |
|
vin (0.997672) |
|
tbr (0.616713) |
|
sin (0.524843) |
|
spl (0.429553) |
|
ste (0.405625) |
|
ova (0.387397) |
|
sme (0.305437) |
|
ret (0.257467) |
|
sug (0.254582) |
|
eru (0.240096) |
|
mgp (0.230681) |
|
tes (0.207814) |
|
aor (0.195274) |
|
mgm (0.180343) |
|
gul (0.177588) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
mga (0.160205) |
|
fco (0.157208) |
|
ctl (0.153069) |
|
ski (0.146735) |
|
lin (0.145603) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
pla (0.133672) |
|
thg (0.126791) |
|
ese (0.126502) |
|
tra (0.123092) |
|
ldo (0.0970026) |