Ss1.1-Mixc-0033j24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACCCTCGGAGCCCATATGCAGCCGGAGCTACCATCCTGTATAGCATCAGGGTGGGGGTG GGGGGGTGTCTCTGCTCCCCTCTTTTGCATGTTCTTAGAGTCCCTCCTTCTCCCAGGTTT TGTCTCAGAGGGACCCCAAGGATGCCCCAGATCAGGGGCTAGAGGGGATGCTTAGCAAAC CCTATTTCCAGAATAACTGGAAAATTCTCCATCTGAAGGCCTGTGGTGGTGGTGGTGGTG GTGGTGAGTATTAGTGCCCACAACCAAGCAGGCAGGACCTTGAGGAGTCAGACTGTCTAT CTGTCTGTCTCCTTTCCCTCAGCTATGCTGGCCCTGAGCTTAAAGATGGGCTTGCAAACC CTTCTCAAGGGTCCTCACCACCCCAACATCTCCAGTTGGGCCTAACCTGGGCCTTGTCTT CCAGCTCCCTTCTGTCCCCAGCCTCATTTCTTAAATGACTAGGATTTTTTTAAATGGACC ATCCTGGGGAGGGGGTGCTCCTCTCCTCCTCCCACCAGGTTGAGGTGGGGGCCTTACATT GGGGGGGACCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACCCTCGGAGCCCATATGCAGCCGGAGCTACCATCCTGTATAGCATCAGGGTGGGGGTG GGGGGGTGTCTCTGCTCCCCTCTTTTGCATGTTCTTAGAGTCCCTCCTTCTCCCAGGTTT TGTCTCAGAGGGACCCCAAGGATGCCCCAGATCAGGGGCTAGAGGGGATGCTTAGCAAAC CCTATTTCCAGAATAACTGGAAAATTCTCCATCTGAAGGCCTGTGGTGGTGGTGGTGGTG GTGGTGAGTATTAGTGCCCACAACCAAGCAGGCAGGACCTTGAGGAGTCAGACTGTCTAT CTGTCTGTCTCCTTTCCCTCAGCTATGCTGGCCCTGAGCTTAAAGATGGGCTTGCAAACC CTTCTCAAGGGTCCTCACCACCCCAACATCTCCAGTTGGGCCTAACCTGGGCCTTGTCTT CCAGCTCCCTTCTGTCCCCAGCCTCATTTCTTAAATGACTAGGATTTTTTTAAATGGACC ATCCTGGGGAGGGGGTGCTCCTCTCCTCCTCCCACCAGGTTGAGGTGGGGGCCTTACATT GGGGGGGACCCA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 40-243, + strand, RNAz p=0.992964 | |
| 302-552, - strand, RNAz p=0.922772 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-243, + strand, RNAz p=0.992964 | |
| 302-552, - strand, RNAz p=0.922772 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 61-158, - strand, RNAmicro p=0.999915 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_178026, + |
| Aligned organism(s): 6 entry(ies) | More info |
| Aligned organism(s): 6 entry(ies) | Help | Less info |
| 1-243, gnl|bosTau2|chr13 (46690967-46691203) | |
| 1-243, gnl|Hg17|chr20 (32896833-32896573) | |
| 1-243, gnl|Mm7|chr2 (155231852-155231621) | |
| 302-552, gnl|bosTau2|chr13 (46691229-46691490) | |
| 302-552, gnl|Hg17|chr20 (32896520-32896266) | |
| 302-552, gnl|Mm7|chr2 (155231577-155231324) |
| Aligned organism(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-243, gnl|bosTau2|chr13 (46690967-46691203) | |
| 1-243, gnl|Hg17|chr20 (32896833-32896573) | |
| 1-243, gnl|Mm7|chr2 (155231852-155231621) | |
| 302-552, gnl|bosTau2|chr13 (46691229-46691490) | |
| 302-552, gnl|Hg17|chr20 (32896520-32896266) | |
| 302-552, gnl|Mm7|chr2 (155231577-155231324) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) |