Non-Coding RNA Search

Ss1.1-Mixc-0033k09.5

Sequence:


               
               CTACGCTGGAGGTCACGGTCAGCCGCGAGAGCCTGCACTTGGATCTGGTCTGGGCACTTT
CCTCCCCCAAGCAGTGGGGTCCCCACAGGGGTGGCCCACGCCATAGCCTCCAAGATGCCC
AGCAGAGCAGCCCGCTATACTCGCTACAGCCCGAGGCAGCGGCGCCGGAGGCTGCTGGCG
GATCGCAGCGTGCGCTTCCCTAACGACGTCCTATTCTTGGACCACATCCGCCAGGGCGAC
CTGGAGCAGGTGGGGCGCTTCATCCGGGCTCGGAAAGTCTCGCTGGACACCATCCATCCC
TCAGGCCTGGCTGCCCTTCATGAAGCGGTGCTCTCTGGAAACCTGGAGTGTGTGAAGCTG
CTGGTCAAACACGGGGCTGACATTCACCAGCGTGACGAGACGGGCTGGACGCCCCTGCAC
ATTGCCTGCAGTGACGGGTACCCCGACATAGCCAGGTATCTCATTTCCCTGGGTGCAGAC
AGAGAAGCGGCCAACGACGACGGTGAGCTGCCCGCGGATCTCATTGACCCTGACTTCAAG
GACTTGGTGGAGCTCTTCAAAGGGACTAAGATGGACTGAGCCCAGCCCTGCCCTCCCAGG
GCTCTAGCCCTCCCTGGAGAAGTCAGATGCCCACCTCCCCGGGGTGCCAGGGGTGCCCCG
CCCACCGGGCTGGGGGGCCCACCAGGCGGCCCAGGACCCCATACCTGGGCGCGACCCCCG
CACCCCCAGCGCTGGCCTGGCTTTTTCTCCGGGTGAATTTTTTATGGTGACACTTTTTAC
TTTTTCAATAAACGTGATGCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACGCTGGAGGTCACGGTCAGCCGCGAGAGCCTGCACTTGGATCTGGTCTGGGCACTTT
CCTCCCCCAAGCAGTGGGGTCCCCACAGGGGTGGCCCACGCCATAGCCTCCAAGATGCCC
AGCAGAGCAGCCCGCTATACTCGCTACAGCCCGAGGCAGCGGCGCCGGAGGCTGCTGGCG
GATCGCAGCGTGCGCTTCCCTAACGACGTCCTATTCTTGGACCACATCCGCCAGGGCGAC
CTGGAGCAGGTGGGGCGCTTCATCCGGGCTCGGAAAGTCTCGCTGGACACCATCCATCCC
TCAGGCCTGGCTGCCCTTCATGAAGCGGTGCTCTCTGGAAACCTGGAGTGTGTGAAGCTG
CTGGTCAAACACGGGGCTGACATTCACCAGCGTGACGAGACGGGCTGGACGCCCCTGCAC
ATTGCCTGCAGTGACGGGTACCCCGACATAGCCAGGTATCTCATTTCCCTGGGTGCAGAC
AGAGAAGCGGCCAACGACGACGGTGAGCTGCCCGCGGATCTCATTGACCCTGACTTCAAG
GACTTGGTGGAGCTCTTCAAAGGGACTAAGATGGACTGAGCCCAGCCCTGCCCTCCCAGG
GCTCTAGCCCTCCCTGGAGAAGTCAGATGCCCACCTCCCCGGGGTGCCAGGGGTGCCCCG
CCCACCGGGCTGGGGGGCCCACCAGGCGGCCCAGGACCCCATACCTGGGCGCGACCCCCG
CACCCCCAGCGCTGGCCTGGCTTTTTCTCCGGGTGAATTTTTTATGGTGACACTTTTTAC
TTTTTCAATAAACGTGATGCCCAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9D119_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9D119_MOUSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-305, gnl|bosTau2|chr19 (45364611-45364311)
               

               
               5-305, gnl|Hg17|chr17 (77386222-77385928)
               

               
               5-305, gnl|Mm7|chr11 (120660194-120659908)
               


               
               453-804, gnl|bosTau2|chr19 (45363802-45363443)
               

               
               453-804, gnl|Hg17|chr17 (77385020-77384685)
               

               
               453-804, gnl|Mm7|chr11 (120659377-120659024)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-305, gnl|bosTau2|chr19 (45364611-45364311)
               

               
               5-305, gnl|Hg17|chr17 (77386222-77385928)
               

               
               5-305, gnl|Mm7|chr11 (120660194-120659908)
               


               
               453-804, gnl|bosTau2|chr19 (45363802-45363443)
               

               
               453-804, gnl|Hg17|chr17 (77385020-77384685)
               

               
               453-804, gnl|Mm7|chr11 (120659377-120659024)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mas (0.630915)
               

               
               ton (0.526501)
               

               
               nep (0.183925)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               eru (0.120048)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.630915)
               

               
               ton (0.526501)
               

               
               nep (0.183925)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               eru (0.120048)

	5-305, gnl\|bosTau2\|chr19 (45364611-45364311)
	5-305, gnl\|Hg17\|chr17 (77386222-77385928)
	5-305, gnl\|Mm7\|chr11 (120660194-120659908)

	453-804, gnl\|bosTau2\|chr19 (45363802-45363443)
	453-804, gnl\|Hg17\|chr17 (77385020-77384685)
	453-804, gnl\|Mm7\|chr11 (120659377-120659024)

	mas (0.630915)
	ton (0.526501)
	nep (0.183925)
	nca (0.136874)
	ssp (0.13552)
	eru (0.120048)