Non-Coding RNA Search

Ss1.1-Mixc-0033k23.5

Sequence:


               
               CACAGAGGCTGAGGGACCTGTCGCCGCTCGGTCTCCGGAAACGGAGGGCCCCGCTGCTGT
CGCCGCCCGGCCGGTTCCCGGACGGAGCCCTGGACGGCCAGCTTCCTGCCGCGGAGGGGG
CACAGAAATCCTTCTGCCCGGGCCTGAGCCTGGCCTGGGCGACAGGCCCTCCATCCCGGA
ATGCCCCTGCCCGAGCCCAGCGAGCAGGAGGGCGAGAGCGTGAAGGCCGGCCAGGAACCC
TGCCCCAAGTCCCCTGAGCCGGGCACAGATGTGGTCCCCGCAGCACCCATGAAGCCCAGG
AAGTTCTCCAAACTGGTCCTGCTGACGGCCTCCAAAGACAGTGCCAAAGTGGCTGGGGCC
AAGCGCAAAGGCGTGCACTGCATCATGTCCCTGGGGGTGCCCGGCCCTGCCACCCTGGCC
AAAGCCCTGCTCAAGACCCACCCCGAGGCTCAGCGGGCCATCGAGGCCGCCCCCCAGGAG
CCTGAGCAGAAACGCAGCAAGGTGGACACAGATGGAAAAGAAGACGGAAGCATGGCAGGG
GAGCCTGTCCCCAGCTCTTCCTCGGGGGGCCGGGAGGAGTCTGCTGTGGGCCCCTTGATT
GTGCCTGCCATGCCGGGGGAGGCCCCGTAGCGCTGACAGCAGAGGGTGTGTCCTTGCCGG
GTCACTGGACGGGGCTGCCAATTCCACACGTTCCACTGGGTTTCTGCCTGGGGCCCAACC
ACTGACTGGTTTTTATGTTCAACACTGTAATTGTTTTCAGATCAAGCATAATTTACTTTT
ATAAGCAGGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGAGGCTGAGGGACCTGTCGCCGCTCGGTCTCCGGAAACGGAGGGCCCCGCTGCTGT
CGCCGCCCGGCCGGTTCCCGGACGGAGCCCTGGACGGCCAGCTTCCTGCCGCGGAGGGGG
CACAGAAATCCTTCTGCCCGGGCCTGAGCCTGGCCTGGGCGACAGGCCCTCCATCCCGGA
ATGCCCCTGCCCGAGCCCAGCGAGCAGGAGGGCGAGAGCGTGAAGGCCGGCCAGGAACCC
TGCCCCAAGTCCCCTGAGCCGGGCACAGATGTGGTCCCCGCAGCACCCATGAAGCCCAGG
AAGTTCTCCAAACTGGTCCTGCTGACGGCCTCCAAAGACAGTGCCAAAGTGGCTGGGGCC
AAGCGCAAAGGCGTGCACTGCATCATGTCCCTGGGGGTGCCCGGCCCTGCCACCCTGGCC
AAAGCCCTGCTCAAGACCCACCCCGAGGCTCAGCGGGCCATCGAGGCCGCCCCCCAGGAG
CCTGAGCAGAAACGCAGCAAGGTGGACACAGATGGAAAAGAAGACGGAAGCATGGCAGGG
GAGCCTGTCCCCAGCTCTTCCTCGGGGGGCCGGGAGGAGTCTGCTGTGGGCCCCTTGATT
GTGCCTGCCATGCCGGGGGAGGCCCCGTAGCGCTGACAGCAGAGGGTGTGTCCTTGCCGG
GTCACTGGACGGGGCTGCCAATTCCACACGTTCCACTGGGTTTCTGCCTGGGGCCCAACC
ACTGACTGGTTTTTATGTTCAACACTGTAATTGTTTTCAGATCAAGCATAATTTACTTTT
ATAAGCAGGACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57088079|ref|XP_536997.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57088079|ref|XP_536997.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               151-270, - strand, RNAz p=0.539174
               

               
               397-514, - strand, RNAz p=0.532316

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-270, - strand, RNAz p=0.539174
               

               
               397-514, - strand, RNAz p=0.532316

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               80-514, gnl|bosTau2|chr25 (3755773-3756205)
               

               
               80-514, gnl|Hg17|chr16 (2886353-2886776)
               

               
               80-514, gnl|Mm7|chr17 (21959932-21959500)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-514, gnl|bosTau2|chr25 (3755773-3756205)
               

               
               80-514, gnl|Hg17|chr16 (2886353-2886776)
               

               
               80-514, gnl|Mm7|chr17 (21959932-21959500)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               cbr (0.127975)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               cbr (0.127975)
               

               
               ebs (0.118301)

	151-270, - strand, RNAz p=0.539174
	397-514, - strand, RNAz p=0.532316

	80-514, gnl\|bosTau2\|chr25 (3755773-3756205)
	80-514, gnl\|Hg17\|chr16 (2886353-2886776)
	80-514, gnl\|Mm7\|chr17 (21959932-21959500)