Non-Coding RNA Search

Ss1.1-Mixc-0033l05.3

Sequence:


               
               CAGTAGTAGCCTCCAAGAAAGCAACCCCTGGAGCTCATACTGGGGCTATACCTAAGGCTG
GATCAGCTACTGGAGCTGTACCCAAGGGTGGAGCTAAGGGTGGAACCAGGTCCCGGACTG
GAGGCAAGGGCAAGGGCAAGAAAAATAAAGTTGAAGTAGATGAATTGGGGCTGGGCTTCC
GTCCTGGAGATGGGGCTGCGGCAGCTGCTGCAGCCTCTGCTAATGGGGGGCAGGCTTTCC
TGGCAGAGGTTCCTGATTCTGAAGAAGGAGAGTCTGGGTGGACTGACACAGAGTCAGAGT
CAGACTCTGAGCCTGAGACCCAGCAGAGAGGGAGAGGGAGAAGACCCATTCCCATGCAGA
AGCGTCCCTTTCCTTATGAAATTGATGAGATTCTGGGTGTCCGAGATCTCAGGAAAGTCC
TTGCTTTGCTTCAGAAATCAGATGATCCTTTCATCCAGCAGGTAGCTTTGCTCACTCTGA
GCAACAATGCCAACTATTCATGCAACCAAGACACAATTCGTAAGTTGGGAGGTCTTCCGA
TTATTGCAAACATGATCCACAAAACTGATCCCCACATTAAGGAAAAGGCCTTAATGGCCA
TGAATAACCTGAGTGAGAATTATGAAAATCAGGGCCGGCTTCAGGTATACATGAATAAAG
TGATGGATGACATCATGGCCTCTAACCTGAACTCAGCAGTACAGGTAGTCGGACTAAAAT
TTTTAACAAACATGACTATTACTAACGACTACCAGCACCTGCTTGTCAATTCCATTGCAA
ACTTTTTCCGTTTGTTATCTCAAGGAGGTGGAAAAATCAAGGTTGAGATTTTGAAAATAC
TTTCGAATTTTGCTGAAAATCCAGATATGTTAAAAAAACTTCTCAGTACCCAAGTGCCGT
CATCATTTAGTTCCCTCTACAATTCTTATGTGGAATCAGAAATTCTTATTAATGCCCTGA
CTCTGTTTGAAATCATCTATGACAATCTCAGAGCAGAAGTATTCAACTACAGAGAATTCA
ATAAAGGCTCCCTTTTCTACTTATGCACTGCCTCTGGAGTGTGCGTTAAGAAAATTCGAG
CCTTAGCAGATCACCATGACCTCTTGGTGAAGGTGAAAGTGATAAAACTAGTGGACAAAT
TCTGATTGGCTGTGTGCTCTCAAAGACTGGAAGAAATGTCTGGTTTAGCAGTTGGGAAGC
AATGAAAATTGAAAGTTACTGCTTTTCCACTCACTCATATAGTAAAGGAATCATTTCAGT
GCCAGTTTTGACTAATACTATATCATCCAGAGTGATGTTATCTGTGACAGTCCAGCTTTA
AGCGGAACCATTTTATGAATACCAAATAAATAGTCCTCTTGTACTGAAAACACATTTGTG
ACTTTAATCGTGCTGCTTGAATGGAAATATTTTTACAGGTTCTTCTATGTGAATTGACAG
TGAATCTGTCTGTCTTGAATAGCCTACACTCTTACCATTTGTTTTGACTTGAATTTATCC
ACCAAAGACTTCATTTGTATATCATTAATAAAGTTGTATGTTTTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTAGTAGCCTCCAAGAAAGCAACCCCTGGAGCTCATACTGGGGCTATACCTAAGGCTG
GATCAGCTACTGGAGCTGTACCCAAGGGTGGAGCTAAGGGTGGAACCAGGTCCCGGACTG
GAGGCAAGGGCAAGGGCAAGAAAAATAAAGTTGAAGTAGATGAATTGGGGCTGGGCTTCC
GTCCTGGAGATGGGGCTGCGGCAGCTGCTGCAGCCTCTGCTAATGGGGGGCAGGCTTTCC
TGGCAGAGGTTCCTGATTCTGAAGAAGGAGAGTCTGGGTGGACTGACACAGAGTCAGAGT
CAGACTCTGAGCCTGAGACCCAGCAGAGAGGGAGAGGGAGAAGACCCATTCCCATGCAGA
AGCGTCCCTTTCCTTATGAAATTGATGAGATTCTGGGTGTCCGAGATCTCAGGAAAGTCC
TTGCTTTGCTTCAGAAATCAGATGATCCTTTCATCCAGCAGGTAGCTTTGCTCACTCTGA
GCAACAATGCCAACTATTCATGCAACCAAGACACAATTCGTAAGTTGGGAGGTCTTCCGA
TTATTGCAAACATGATCCACAAAACTGATCCCCACATTAAGGAAAAGGCCTTAATGGCCA
TGAATAACCTGAGTGAGAATTATGAAAATCAGGGCCGGCTTCAGGTATACATGAATAAAG
TGATGGATGACATCATGGCCTCTAACCTGAACTCAGCAGTACAGGTAGTCGGACTAAAAT
TTTTAACAAACATGACTATTACTAACGACTACCAGCACCTGCTTGTCAATTCCATTGCAA
ACTTTTTCCGTTTGTTATCTCAAGGAGGTGGAAAAATCAAGGTTGAGATTTTGAAAATAC
TTTCGAATTTTGCTGAAAATCCAGATATGTTAAAAAAACTTCTCAGTACCCAAGTGCCGT
CATCATTTAGTTCCCTCTACAATTCTTATGTGGAATCAGAAATTCTTATTAATGCCCTGA
CTCTGTTTGAAATCATCTATGACAATCTCAGAGCAGAAGTATTCAACTACAGAGAATTCA
ATAAAGGCTCCCTTTTCTACTTATGCACTGCCTCTGGAGTGTGCGTTAAGAAAATTCGAG
CCTTAGCAGATCACCATGACCTCTTGGTGAAGGTGAAAGTGATAAAACTAGTGGACAAAT
TCTGATTGGCTGTGTGCTCTCAAAGACTGGAAGAAATGTCTGGTTTAGCAGTTGGGAAGC
AATGAAAATTGAAAGTTACTGCTTTTCCACTCACTCATATAGTAAAGGAATCATTTCAGT
GCCAGTTTTGACTAATACTATATCATCCAGAGTGATGTTATCTGTGACAGTCCAGCTTTA
AGCGGAACCATTTTATGAATACCAAATAAATAGTCCTCTTGTACTGAAAACACATTTGTG
ACTTTAATCGTGCTGCTTGAATGGAAATATTTTTACAGGTTCTTCTATGTGAATTGACAG
TGAATCTGTCTGTCTTGAATAGCCTACACTCTTACCATTTGTTTTGACTTGAATTTATCC
ACCAAAGACTTCATTTGTATATCATTAATAAAGTTGTATGTTTTGACT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9CS81_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9CS81_MOUSE

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               26-782, - strand, RNAz p=0.996619
               

               
               901-1020, - strand, RNAz p=0.942111

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               26-782, - strand, RNAz p=0.996619
               

               
               901-1020, - strand, RNAz p=0.942111

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1543, gnl|bosTau2|chr18 (20275874-20274334)
               

               
               1-1543, gnl|Hg17|chrX (100717980-100716425)
               

               
               1-1543, gnl|Mm7|chrX (129524888-129523368)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1543, gnl|bosTau2|chr18 (20275874-20274334)
               

               
               1-1543, gnl|Hg17|chrX (100717980-100716425)
               

               
               1-1543, gnl|Mm7|chrX (129524888-129523368)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               aor (0.781097)
               

               
               fco (0.471624)
               

               
               ret (0.3862)
               

               
               vin (0.332557)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.781097)
               

               
               fco (0.471624)
               

               
               ret (0.3862)
               

               
               vin (0.332557)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	26-782, - strand, RNAz p=0.996619
	901-1020, - strand, RNAz p=0.942111

	1-1543, gnl\|bosTau2\|chr18 (20275874-20274334)
	1-1543, gnl\|Hg17\|chrX (100717980-100716425)
	1-1543, gnl\|Mm7\|chrX (129524888-129523368)

	aor (0.781097)
	fco (0.471624)
	ret (0.3862)
	vin (0.332557)
	sug (0.254582)
	ece (0.229305)
	fcc (0.197785)
	gul (0.177588)
	lun (0.150489)
	bfe (0.149858)
	lin (0.145603)
	spl (0.143184)
	hyp (0.142837)
	kid (0.129735)
	ova (0.129132)
	pgl (0.118483)
	ebs (0.118301)
	ecc (0.115035)