Non-Coding RNA Search

Ss1.1-Mixc-0033l11.3

Sequence:


               
               GCAGGGCTGGGAGGTCGAGGCCAGAAGCAGCAGCCTCCAGCCAGAGGTAGCAGCAGCTTA
GATGGCTCTGCTGGCATTGGAGCCCTGAGGACGTGAGGGTTGGTGGTGAATCTCCACCCT
CAGCTGTGCCTAACTCTGCTGTTTGTGTCCTTGGGATGCCCAGCAAAGTGGACAGAAAGA
AGCAGGAAGGCCTTCTAGCCAGATCACAGGAACTGATCCAGGGAAGGAAGCAGAAAACCC
CTCCCATTTGCTCTTACCTTAGAGCTGCCTAAGGACACTGCCGTGGAGGCCAGGCCTGGG
CTATACAGCTGTGGACATCTGCGATGACCTGTGCTTCCAAAAAGGCACCCCCTGAGGGCC
TGGGACCCTTCCCAGGAAGATTTGCAGCCCAGACTAAAGGTGTTATGAAGCACCATCTGT
ACTCTGCTGTCCACTTCAGGCAAGATGACCACGTCTCATTAACCAACAGATCATCAACAT
GCAAAGAGACCACTACTTTCCCTGTCAAAGTTGACAGCAAATTCTGCAGGACTGGAGGAG
ATGGGTGGTGCACCCTCTCTGCAGCTTCCTTCCTAAGGGAGAGACCACCCAGGGTCCCCT
CTTCAGGGCCCTCCCTGCCCAGGGAAGTGAGCCGACTCCCATCAGGGTAAGGTCCCACCC
AGTTCCTGTGAGCACTGCCTCCGTAGGGTTCATAGACACATGACATGGCTGTCCTCTTCC
AGGAAACCTTGTCCCTACCATCCAGGAGGCTGGGCCTCAGCAGGGCCACTTGATCCTTTG
ATAAGAGACCAAGGTGCTGTTTTGTGTCAGCCTAACTGTGTTTCCATGTACCATCCAACA
CTACTTTCTGTTATTTTATTATTTCCATACAAAGACTTGATTCTTTGAAGGATTTTTGTT
TGCCAAATGTATATTAAATAATGGTGAATTTGTCTTCTCACTGTGACTTTGCTCATCAAA
GGTATAAAGTACTGCTCAGATTTCTTCCAGTGAGAACTGTCCTGGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGGCTGGGAGGTCGAGGCCAGAAGCAGCAGCCTCCAGCCAGAGGTAGCAGCAGCTTA
GATGGCTCTGCTGGCATTGGAGCCCTGAGGACGTGAGGGTTGGTGGTGAATCTCCACCCT
CAGCTGTGCCTAACTCTGCTGTTTGTGTCCTTGGGATGCCCAGCAAAGTGGACAGAAAGA
AGCAGGAAGGCCTTCTAGCCAGATCACAGGAACTGATCCAGGGAAGGAAGCAGAAAACCC
CTCCCATTTGCTCTTACCTTAGAGCTGCCTAAGGACACTGCCGTGGAGGCCAGGCCTGGG
CTATACAGCTGTGGACATCTGCGATGACCTGTGCTTCCAAAAAGGCACCCCCTGAGGGCC
TGGGACCCTTCCCAGGAAGATTTGCAGCCCAGACTAAAGGTGTTATGAAGCACCATCTGT
ACTCTGCTGTCCACTTCAGGCAAGATGACCACGTCTCATTAACCAACAGATCATCAACAT
GCAAAGAGACCACTACTTTCCCTGTCAAAGTTGACAGCAAATTCTGCAGGACTGGAGGAG
ATGGGTGGTGCACCCTCTCTGCAGCTTCCTTCCTAAGGGAGAGACCACCCAGGGTCCCCT
CTTCAGGGCCCTCCCTGCCCAGGGAAGTGAGCCGACTCCCATCAGGGTAAGGTCCCACCC
AGTTCCTGTGAGCACTGCCTCCGTAGGGTTCATAGACACATGACATGGCTGTCCTCTTCC
AGGAAACCTTGTCCCTACCATCCAGGAGGCTGGGCCTCAGCAGGGCCACTTGATCCTTTG
ATAAGAGACCAAGGTGCTGTTTTGTGTCAGCCTAACTGTGTTTCCATGTACCATCCAACA
CTACTTTCTGTTATTTTATTATTTCCATACAAAGACTTGATTCTTTGAAGGATTTTTGTT
TGCCAAATGTATATTAAATAATGGTGAATTTGTCTTCTCACTGTGACTTTGCTCATCAAA
GGTATAAAGTACTGCTCAGATTTCTTCCAGTGAGAACTGTCCTGGAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               4-121, + strand, RNAz p=0.854735

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-121, + strand, RNAz p=0.854735

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of CR749467, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR749467, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-532, gnl|bosTau2|chr8 (35205457-35205972)
               

               
               4-532, gnl|Hg17|chr9 (98574388-98573845)
               

               
               4-532, gnl|Mm7|chr4 (47030628-47030042)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-532, gnl|bosTau2|chr8 (35205457-35205972)
               

               
               4-532, gnl|Hg17|chr9 (98574388-98573845)
               

               
               4-532, gnl|Mm7|chr4 (47030628-47030042)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hlv (0.139256)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               nmm (0.132802)

	4-532, gnl\|bosTau2\|chr8 (35205457-35205972)
	4-532, gnl\|Hg17\|chr9 (98574388-98573845)
	4-532, gnl\|Mm7\|chr4 (47030628-47030042)