Ss1.1-Mixc-0033l20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCGGCCCCGAGATCCTTTCATTTTTTGGAAATTGGACTTTGAGCCATTAGAACCATGA GCAACTACAGTGTGTCCTTGGTTGGCCCGGCGCCTTGGGGTTTCCGGCTGCAAGGTGGCA AGGATTTCAACATGCCTCTGACAATCTCCAGTCTGAAAGATGGTGGCAAAGCATCCCAGG CAAATGTGAGAATAGGTGACGTGGTTCTGAGCATTGATGGAATCAGTGCACAAGGCATGA CTCATCTTGAAGCCCAGAACAAGATTAAGGGTAGTACAGGCTCTTTGAATATGACTCTGC AAAGAGCATCTGCTACACCCAAGCCTGAGCCGGTTCCTGTTCAAAAGAAAACAAAAGTGA CAAATAACCCTGGCACCGTGAAAATCCCACCCAAACGCCCACCCAGGAAACACATTGTGG AGCGCAATACAGAGTTTTATCACATACCTACGCACAGCGATGCCAGCAAGAAGAGACTGA TGGAGGACACTGAGGACTGGCGTCCAAGGACTGGAACGACTCAGTCTCGCTCTTTCCGAA TCCTCGCCCAAATCACCGGGACTGAACATCTGAAAGAATCTGAAACTGACAATACAAAGA AGGCAAAGGAAAAGATACCCCTTCACGTCTTTAGTCCCAAATACACAAAATTACGTGACT GGCACCATGAAGTTTCAGCACGTGCTCTTAACGTACAGTGATTTATGACCTTGCCCCCCA CACACACTCCCCCTCCCCAGCAGCCAGCACATACCTTTTCATTCACTTTTTTCTTCTTCT CCAACTTCATAGCAAAATCTGTATGAAATCTGCCTTATGAAAGACAAAATAGTCCCTTTT CTATACTTTTCTGACCATTTCCTGCTGTTGCGAAAACAAGGAGGATGAACGCATTTTGTG CTAGTTGAGAGCTCACGGCTGTTAAACCAAGAGAGCAAATTAAGGAGCTAGATCGATGCA GGGGATTGACGTTTGTTTTCATTGTCATTATGGTAGTAACCTTGGAAGGGGACGTCTTGT CTTTTCGTAAGTGGAATTCGGTTATTTGAAACAGAGGTGGGTGGGCATCTAATGCCCTCG TCTAATGTGGAACATTCTTCCTTTGTGTTACTGCACTTCCCAAGGTTACTTTTAAGTTCA TTGCTATGTAATGTTCAAAGTGGGTTGTAAACTGTGCGAAATCAGCAAATATGAGGAGGC AAGATAAAAAAAGAAATGACTGTTAGCCTAGAGTTTGTTAGAGATTTGGGTATTTTTTCA AAGCAGGTACTACCGAAGATGGTTATGTGAAGAGCAGGAGGCCCAGATTTGGCTCCTAAA AAAGAAAGGAAGAGAATTCTGCCCCTGTTTGCAGTGGGGAAAAATGCAGTGTTCTTTTGG TGTGGTTAGTTTTAAAAATCCTATTTTCTACCCAAGAAAGTATTTCTAAACTGGTGGATG TGTTTAGGGTATAGACAACTTCTGAGTATTAACTAGTAAGATATAGAAAAGATAGCTTTG CTTTGTTTCTAAATCAGAGGAAATGAACATAAAAAAAAATTGCAATATACGAATGATTCT TTACATGACATCAGAGCAGTATTTTGCTTAGTGACATAAACTACTCTGCGTTGCTGCTAT TCCAGGAAGCTTTGTTTGGGGCAATACACACAAGCTCAATATCTGACCAGAATGCTTTCT ATCTTGTAATATAATGTATTATAAATTAGATTAAATTCAATAATAAAATGCATTTTGAAG CTTGGAAAAGTATTGTAATAAAGTTGCCTTGAACTTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCGGCCCCGAGATCCTTTCATTTTTTGGAAATTGGACTTTGAGCCATTAGAACCATGA GCAACTACAGTGTGTCCTTGGTTGGCCCGGCGCCTTGGGGTTTCCGGCTGCAAGGTGGCA AGGATTTCAACATGCCTCTGACAATCTCCAGTCTGAAAGATGGTGGCAAAGCATCCCAGG CAAATGTGAGAATAGGTGACGTGGTTCTGAGCATTGATGGAATCAGTGCACAAGGCATGA CTCATCTTGAAGCCCAGAACAAGATTAAGGGTAGTACAGGCTCTTTGAATATGACTCTGC AAAGAGCATCTGCTACACCCAAGCCTGAGCCGGTTCCTGTTCAAAAGAAAACAAAAGTGA CAAATAACCCTGGCACCGTGAAAATCCCACCCAAACGCCCACCCAGGAAACACATTGTGG AGCGCAATACAGAGTTTTATCACATACCTACGCACAGCGATGCCAGCAAGAAGAGACTGA TGGAGGACACTGAGGACTGGCGTCCAAGGACTGGAACGACTCAGTCTCGCTCTTTCCGAA TCCTCGCCCAAATCACCGGGACTGAACATCTGAAAGAATCTGAAACTGACAATACAAAGA AGGCAAAGGAAAAGATACCCCTTCACGTCTTTAGTCCCAAATACACAAAATTACGTGACT GGCACCATGAAGTTTCAGCACGTGCTCTTAACGTACAGTGATTTATGACCTTGCCCCCCA CACACACTCCCCCTCCCCAGCAGCCAGCACATACCTTTTCATTCACTTTTTTCTTCTTCT CCAACTTCATAGCAAAATCTGTATGAAATCTGCCTTATGAAAGACAAAATAGTCCCTTTT CTATACTTTTCTGACCATTTCCTGCTGTTGCGAAAACAAGGAGGATGAACGCATTTTGTG CTAGTTGAGAGCTCACGGCTGTTAAACCAAGAGAGCAAATTAAGGAGCTAGATCGATGCA GGGGATTGACGTTTGTTTTCATTGTCATTATGGTAGTAACCTTGGAAGGGGACGTCTTGT CTTTTCGTAAGTGGAATTCGGTTATTTGAAACAGAGGTGGGTGGGCATCTAATGCCCTCG TCTAATGTGGAACATTCTTCCTTTGTGTTACTGCACTTCCCAAGGTTACTTTTAAGTTCA TTGCTATGTAATGTTCAAAGTGGGTTGTAAACTGTGCGAAATCAGCAAATATGAGGAGGC AAGATAAAAAAAGAAATGACTGTTAGCCTAGAGTTTGTTAGAGATTTGGGTATTTTTTCA AAGCAGGTACTACCGAAGATGGTTATGTGAAGAGCAGGAGGCCCAGATTTGGCTCCTAAA AAAGAAAGGAAGAGAATTCTGCCCCTGTTTGCAGTGGGGAAAAATGCAGTGTTCTTTTGG TGTGGTTAGTTTTAAAAATCCTATTTTCTACCCAAGAAAGTATTTCTAAACTGGTGGATG TGTTTAGGGTATAGACAACTTCTGAGTATTAACTAGTAAGATATAGAAAAGATAGCTTTG CTTTGTTTCTAAATCAGAGGAAATGAACATAAAAAAAAATTGCAATATACGAATGATTCT TTACATGACATCAGAGCAGTATTTTGCTTAGTGACATAAACTACTCTGCGTTGCTGCTAT TCCAGGAAGCTTTGTTTGGGGCAATACACACAAGCTCAATATCTGACCAGAATGCTTTCT ATCTTGTAATATAATGTATTATAAATTAGATTAAATTCAATAATAAAATGCATTTTGAAG CTTGGAAAAGTATTGTAATAAAGTTGCCTTGAACTTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 647-765, + strand, RNAz p=0.509932 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 647-765, + strand, RNAz p=0.509932 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_001011516, + |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 12-152, gnl|bosTau2|chr6 (13020888-13020749) | |
| 12-152, gnl|canFam2|chr32 (20262600-20262735) | |
| 12-152, gnl|dasNov1|scaffold_5640 (24434-24305) | |
| 12-152, gnl|echTel1|scaffold_307645 (46334-46461) | |
| 12-152, gnl|Hg17|chr4 (95733574-95733713) | |
| 12-152, gnl|hg17|chr6 (167640222-167640361) | |
| 12-152, gnl|loxAfr1|scaffold_29820 (15432-15304) | |
| 12-152, gnl|Mm7|chr3 (142284793-142284654) | |
| 12-152, gnl|mm7|chr8 (21190408-21190547) | |
| 12-152, gnl|oryCun1|scaffold_179132 (52033-52172) | |
| 12-152, gnl|panTro1|chr3 (112013338-112013460) | |
| 12-152, gnl|rheMac2|chr4 (164280947-164281085) | |
| 12-152, gnl|rn3|chr2_random (3216563-3216424) | |
| 153-304, gnl|bosTau2|chr6 (12948526-12948374) | |
| 153-304, gnl|canFam2|chr32 (20332403-20332527) | |
| 153-304, gnl|danRer3|chrUn (30953294-30953170) | |
| 153-304, gnl|dasNov1|scaffold_132307 (3659-3535) | |
| 153-304, gnl|echTel1|scaffold_15161 (876-752) | |
| 153-304, gnl|fr1|chrUn (118260883-118261002) | |
| 153-304, gnl|galGal2|chr4 (58746766-58746893) | |
| 153-304, gnl|hg17|chr4 (95802044-95802168) | |
| 153-304, gnl|Hg17|chr4 (95802053-95802204) | |
| 153-304, gnl|loxAfr1|scaffold_3506 (42335-42211) | |
| 153-304, gnl|mm7|chr3 (142245838-142245714) | |
| 153-304, gnl|Mm7|chr3 (142245827-142245676) | |
| 153-304, gnl|monDom2|scaffold_32 (26086379-26086255) | |
| 153-304, gnl|oryCun1|scaffold_194008 (103584-103709) | |
| 153-304, gnl|panTro1|chr3 (112087867-112087991) | |
| 153-304, gnl|rheMac2|chr5 (87494394-87494518) | |
| 153-304, gnl|rn3|chr2 (240283665-240283541) | |
| 153-304, gnl|tetNig1|chr5 (8572373-8572492) | |
| 153-304, gnl|xenTro1|scaffold_222 (298707-298834) | |
| 397-570, gnl|bosTau2|chr6 (12876749-12876576) | |
| 397-570, gnl|canFam2|chr32 (20394603-20394794) | |
| 397-570, gnl|danRer3|chrNA (175384600-175384448) | |
| 397-570, gnl|dasNov1|scaffold_4959 (98306-98497) | |
| 397-570, gnl|echTel1|scaffold_314214 (62955-63148) | |
| 397-570, gnl|fr1|chrUn (118273785-118273972) | |
| 397-570, gnl|galGal2|chr4 (58777437-58777628) | |
| 397-570, gnl|hg17|chr4 (95863895-95864086) | |
| 397-570, gnl|Hg17|chr4 (95863893-95864066) | |
| 397-570, gnl|loxAfr1|scaffold_186294 (1234-1043) | |
| 397-570, gnl|mm7|chr3 (142197412-142197221) | |
| 397-570, gnl|Mm7|chr3 (142197412-142197239) | |
| 397-570, gnl|monDom2|scaffold_32 (26016847-26016670) | |
| 397-570, gnl|oryCun1|scaffold_213750 (91521-91330) | |
| 397-570, gnl|rheMac2|chr5 (87555627-87555818) | |
| 397-570, gnl|rn3|chr2 (240231557-240231366) | |
| 397-570, gnl|tetNig1|chr5 (8593529-8593701) | |
| 397-570, gnl|xenTro1|scaffold_222 (330827-331018) | |
| 608-1777, gnl|bosTau2|chr6 (12875644-12874499) | |
| 608-1777, gnl|Hg17|chr4 (95865318-95866456) | |
| 608-1777, gnl|Mm7|chr3 (142196363-142195257) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 12-152, gnl|bosTau2|chr6 (13020888-13020749) | |
| 12-152, gnl|canFam2|chr32 (20262600-20262735) | |
| 12-152, gnl|dasNov1|scaffold_5640 (24434-24305) | |
| 12-152, gnl|echTel1|scaffold_307645 (46334-46461) | |
| 12-152, gnl|Hg17|chr4 (95733574-95733713) | |
| 12-152, gnl|hg17|chr6 (167640222-167640361) | |
| 12-152, gnl|loxAfr1|scaffold_29820 (15432-15304) | |
| 12-152, gnl|Mm7|chr3 (142284793-142284654) | |
| 12-152, gnl|mm7|chr8 (21190408-21190547) | |
| 12-152, gnl|oryCun1|scaffold_179132 (52033-52172) | |
| 12-152, gnl|panTro1|chr3 (112013338-112013460) | |
| 12-152, gnl|rheMac2|chr4 (164280947-164281085) | |
| 12-152, gnl|rn3|chr2_random (3216563-3216424) | |
| 153-304, gnl|bosTau2|chr6 (12948526-12948374) | |
| 153-304, gnl|canFam2|chr32 (20332403-20332527) | |
| 153-304, gnl|danRer3|chrUn (30953294-30953170) | |
| 153-304, gnl|dasNov1|scaffold_132307 (3659-3535) | |
| 153-304, gnl|echTel1|scaffold_15161 (876-752) | |
| 153-304, gnl|fr1|chrUn (118260883-118261002) | |
| 153-304, gnl|galGal2|chr4 (58746766-58746893) | |
| 153-304, gnl|hg17|chr4 (95802044-95802168) | |
| 153-304, gnl|Hg17|chr4 (95802053-95802204) | |
| 153-304, gnl|loxAfr1|scaffold_3506 (42335-42211) | |
| 153-304, gnl|mm7|chr3 (142245838-142245714) | |
| 153-304, gnl|Mm7|chr3 (142245827-142245676) | |
| 153-304, gnl|monDom2|scaffold_32 (26086379-26086255) | |
| 153-304, gnl|oryCun1|scaffold_194008 (103584-103709) | |
| 153-304, gnl|panTro1|chr3 (112087867-112087991) | |
| 153-304, gnl|rheMac2|chr5 (87494394-87494518) | |
| 153-304, gnl|rn3|chr2 (240283665-240283541) | |
| 153-304, gnl|tetNig1|chr5 (8572373-8572492) | |
| 153-304, gnl|xenTro1|scaffold_222 (298707-298834) | |
| 397-570, gnl|bosTau2|chr6 (12876749-12876576) | |
| 397-570, gnl|canFam2|chr32 (20394603-20394794) | |
| 397-570, gnl|danRer3|chrNA (175384600-175384448) | |
| 397-570, gnl|dasNov1|scaffold_4959 (98306-98497) | |
| 397-570, gnl|echTel1|scaffold_314214 (62955-63148) | |
| 397-570, gnl|fr1|chrUn (118273785-118273972) | |
| 397-570, gnl|galGal2|chr4 (58777437-58777628) | |
| 397-570, gnl|hg17|chr4 (95863895-95864086) | |
| 397-570, gnl|Hg17|chr4 (95863893-95864066) | |
| 397-570, gnl|loxAfr1|scaffold_186294 (1234-1043) | |
| 397-570, gnl|mm7|chr3 (142197412-142197221) | |
| 397-570, gnl|Mm7|chr3 (142197412-142197239) | |
| 397-570, gnl|monDom2|scaffold_32 (26016847-26016670) | |
| 397-570, gnl|oryCun1|scaffold_213750 (91521-91330) | |
| 397-570, gnl|rheMac2|chr5 (87555627-87555818) | |
| 397-570, gnl|rn3|chr2 (240231557-240231366) | |
| 397-570, gnl|tetNig1|chr5 (8593529-8593701) | |
| 397-570, gnl|xenTro1|scaffold_222 (330827-331018) | |
| 608-1777, gnl|bosTau2|chr6 (12875644-12874499) | |
| 608-1777, gnl|Hg17|chr4 (95865318-95866456) | |
| 608-1777, gnl|Mm7|chr3 (142196363-142195257) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| vin (3.65813) | |
| isp (3.60902) | |
| bfe (2.69744) | |
| ldo (2.32806) | |
| ste (1.6225) | |
| tbr (1.54178) | |
| hea (1.43149) | |
| ssp (1.08416) | |
| sme (0.91631) | |
| mas (0.630915) | |
| nms (0.427716) | |
| hlv (0.278513) | |
| che (0.272628) | |
| cbe (0.239234) | |
| gul (0.177588) | |
| ctl (0.153069) | |
| hyp (0.142837) | |
| lyg (0.133103) | |
| ret (0.128733) | |
| eru (0.120048) | |
| spc (0.113366) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (3.65813) | |
| isp (3.60902) | |
| bfe (2.69744) | |
| ldo (2.32806) | |
| ste (1.6225) | |
| tbr (1.54178) | |
| hea (1.43149) | |
| ssp (1.08416) | |
| sme (0.91631) | |
| mas (0.630915) | |
| nms (0.427716) | |
| hlv (0.278513) | |
| che (0.272628) | |
| cbe (0.239234) | |
| gul (0.177588) | |
| ctl (0.153069) | |
| hyp (0.142837) | |
| lyg (0.133103) | |
| ret (0.128733) | |
| eru (0.120048) | |
| spc (0.113366) |