Non-Coding RNA Search

Ss1.1-Mixc-0033l22.3

Sequence:


               
               GAGAAGAAGCTGCTTTCCCCCCTGCTCTCTACCCAGTTTCCTGCATGACTTCAGCTATTG
GCCAGTCCTAGGAAAGAAAGTGGGAAAAGCTTTTTCCTCTGTATTCTTTCGGGCTGGATA
GTTTTCCAGGACTCCAGTCTCAGGCTGTGGGACAAGCCACTGGGTTCTTCAAAGGATACG
CTACCTCCCTAAGGACGTACCCTTGGTTAGACAAGCTGCCAGTCAGGTGGGAATGAGATC
CCAAAACCAGGGTGGAGAAAGTCCATCCAATGGGCATGGCTCCTGCCCCAAGTCCTCCAT
CATCAGCAATGTTGATGGTAAAAGTCTCTCAGAAGATACAAAAAAGAAGAACAAATCAAA
TAGAAAGGAGGATGATGTCATGGCTTCAGGAACTGTCAAACGACACCTGAAACCATCTGG
AGACAGTGAACGAAAGAATAAGAAATCCTTGGAGTTGTCCAAAGAAGACCTCATCCAGCT
ACTCAGTATAATGGAAGGGGAGTTGCAGGCCAGAGAAGATGTGATCCACATGCTGAAGAC
GGAGAAGACCAAGCCTGAGGTTCTGGAGGCTCATTATGGGTCTGCGGAGCCGGAGAAAGT
GCTGCGAGTCCTGCACCGAGACGCCATACTAGCCCAGGAGAAGTCTGTAGGGGAGGACGT
GTACGAGAAACCCATCTCAGAGCTGGACAGACTTGAGGAAAAACAGAAGGAAACCTACAG
GCGCATGCTAGAGCAGCTGCTGCTGGCGGAGAAGTGTCACCGGCGCACAGTGTATGAGCT
GGAGAACGAAAAGCACAAGCACACGGACTACATGAACAAGAGCGACGACTTCACCAACCT
GCTGGAGCAGGAGCGGGAGAGGTTGAAAAAACTCCTTGAACAAGAAAAGGCTTACCAAGC
CCGCAAAGAAAAGGAAAACGCTAAGCGGCTCAACAAACTGAGAGATGAGCTTGTGAAACT
CAAGTCCTTTGCACTCATGCTGGTGGATGAAAGGCAAATGCATATTGAGCAACTTGGCCT
ACAAAGCCAGAAAGTACAGGACCTGACTCAGAAGCTGAGGGAAGAAGAAGAAAAGCTCAA
AGCCATTACTTCCAAATCCAAAGAAGACAGACAGAAATTGCTCAAGTTGGAAGTTGATTT
TGAACACAAGGCTTCAAGGTTTTCCCAGGAGCATGAAGAGATGAACGCAAAGTTGGTCAA
TCAGGAATCTCACAACAGGCAACTCAGACTCAAGGTGGTGGGTCTGACCCAGAGAATCGA
GGAGCTGGAAGAGACCAACAGAAATCTGCAGAAGGCGGAGGAAGAGCTTCAGGAACTCAG
AGATAAAATCGCCAAAGGGGAATGTGGCAACTCCACCCTCATGGCGGAAGTGGAAAATCT
ACGGAAGCGTGTCCTTGAGATGGAGGGTAAGGATGAGGAGATTACGAAAACTGAATCCCA
GTGCAGGGAACTGAGAAAGAAGCTGCAGGAGGAAGAACACCACAGCCGTGAGCTCAAACT
TGAGGTTGAGAAGTTACAGAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAGAAGCTGCTTTCCCCCCTGCTCTCTACCCAGTTTCCTGCATGACTTCAGCTATTG
GCCAGTCCTAGGAAAGAAAGTGGGAAAAGCTTTTTCCTCTGTATTCTTTCGGGCTGGATA
GTTTTCCAGGACTCCAGTCTCAGGCTGTGGGACAAGCCACTGGGTTCTTCAAAGGATACG
CTACCTCCCTAAGGACGTACCCTTGGTTAGACAAGCTGCCAGTCAGGTGGGAATGAGATC
CCAAAACCAGGGTGGAGAAAGTCCATCCAATGGGCATGGCTCCTGCCCCAAGTCCTCCAT
CATCAGCAATGTTGATGGTAAAAGTCTCTCAGAAGATACAAAAAAGAAGAACAAATCAAA
TAGAAAGGAGGATGATGTCATGGCTTCAGGAACTGTCAAACGACACCTGAAACCATCTGG
AGACAGTGAACGAAAGAATAAGAAATCCTTGGAGTTGTCCAAAGAAGACCTCATCCAGCT
ACTCAGTATAATGGAAGGGGAGTTGCAGGCCAGAGAAGATGTGATCCACATGCTGAAGAC
GGAGAAGACCAAGCCTGAGGTTCTGGAGGCTCATTATGGGTCTGCGGAGCCGGAGAAAGT
GCTGCGAGTCCTGCACCGAGACGCCATACTAGCCCAGGAGAAGTCTGTAGGGGAGGACGT
GTACGAGAAACCCATCTCAGAGCTGGACAGACTTGAGGAAAAACAGAAGGAAACCTACAG
GCGCATGCTAGAGCAGCTGCTGCTGGCGGAGAAGTGTCACCGGCGCACAGTGTATGAGCT
GGAGAACGAAAAGCACAAGCACACGGACTACATGAACAAGAGCGACGACTTCACCAACCT
GCTGGAGCAGGAGCGGGAGAGGTTGAAAAAACTCCTTGAACAAGAAAAGGCTTACCAAGC
CCGCAAAGAAAAGGAAAACGCTAAGCGGCTCAACAAACTGAGAGATGAGCTTGTGAAACT
CAAGTCCTTTGCACTCATGCTGGTGGATGAAAGGCAAATGCATATTGAGCAACTTGGCCT
ACAAAGCCAGAAAGTACAGGACCTGACTCAGAAGCTGAGGGAAGAAGAAGAAAAGCTCAA
AGCCATTACTTCCAAATCCAAAGAAGACAGACAGAAATTGCTCAAGTTGGAAGTTGATTT
TGAACACAAGGCTTCAAGGTTTTCCCAGGAGCATGAAGAGATGAACGCAAAGTTGGTCAA
TCAGGAATCTCACAACAGGCAACTCAGACTCAAGGTGGTGGGTCTGACCCAGAGAATCGA
GGAGCTGGAAGAGACCAACAGAAATCTGCAGAAGGCGGAGGAAGAGCTTCAGGAACTCAG
AGATAAAATCGCCAAAGGGGAATGTGGCAACTCCACCCTCATGGCGGAAGTGGAAAATCT
ACGGAAGCGTGTCCTTGAGATGGAGGGTAAGGATGAGGAGATTACGAAAACTGAATCCCA
GTGCAGGGAACTGAGAAAGAAGCTGCAGGAGGAAGAACACCACAGCCGTGAGCTCAAACT
TGAGGTTGAGAAGTTACAGAAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21756656|dbj|BAC04928.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21756656|dbj|BAC04928.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               899-1178, - strand, RNAz p=0.905646
               

               
               1136-1253, + strand, RNAz p=0.765703
               

               
               1259-1524, + strand, RNAz p=0.811584

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               899-1178, - strand, RNAz p=0.905646
               

               
               1136-1253, + strand, RNAz p=0.765703
               

               
               1259-1524, + strand, RNAz p=0.811584

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BX647178, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BX647178, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               860-1524, gnl|bosTau2|chr9 (7346294-7346958)
               

               
               860-1524, gnl|canFam2|chr12 (39965137-39966194)
               

               
               860-1524, gnl|danRer3|chrNA (23814652-23815682)
               

               
               860-1524, gnl|dasNov1|scaffold_44278 (3956-2898)
               

               
               860-1524, gnl|echTel1|scaffold_297258 (1699-642)
               

               
               860-1524, gnl|fr1|chrUn (67097246-67098294)
               

               
               860-1524, gnl|galGal2|chr3 (79078416-79077359)
               

               
               860-1524, gnl|hg17|chr6 (76080371-76081428)
               

               
               860-1524, gnl|Hg17|chr6 (76081640-76080976)
               

               
               860-1524, gnl|loxAfr1|scaffold_4387 (40199-41256)
               

               
               860-1524, gnl|mm7|chr9 (79895823-79896880)
               

               
               860-1524, gnl|Mm7|chr9 (79897092-79896428)
               

               
               860-1524, gnl|monDom2|scaffold_0 (158056130-158055073)
               

               
               860-1524, gnl|oryCun1|scaffold_210917 (81576-80519)
               

               
               860-1524, gnl|panTro1|chr5 (77435213-77436270)
               

               
               860-1524, gnl|rheMac2|chr4 (71457056-71458113)
               

               
               860-1524, gnl|rn3|chr8 (84896428-84897485)
               

               
               860-1524, gnl|tetNig1|chr10 (2573083-2574124)
               

               
               860-1524, gnl|xenTro1|scaffold_166 (395936-396993)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               860-1524, gnl|bosTau2|chr9 (7346294-7346958)
               

               
               860-1524, gnl|canFam2|chr12 (39965137-39966194)
               

               
               860-1524, gnl|danRer3|chrNA (23814652-23815682)
               

               
               860-1524, gnl|dasNov1|scaffold_44278 (3956-2898)
               

               
               860-1524, gnl|echTel1|scaffold_297258 (1699-642)
               

               
               860-1524, gnl|fr1|chrUn (67097246-67098294)
               

               
               860-1524, gnl|galGal2|chr3 (79078416-79077359)
               

               
               860-1524, gnl|hg17|chr6 (76080371-76081428)
               

               
               860-1524, gnl|Hg17|chr6 (76081640-76080976)
               

               
               860-1524, gnl|loxAfr1|scaffold_4387 (40199-41256)
               

               
               860-1524, gnl|mm7|chr9 (79895823-79896880)
               

               
               860-1524, gnl|Mm7|chr9 (79897092-79896428)
               

               
               860-1524, gnl|monDom2|scaffold_0 (158056130-158055073)
               

               
               860-1524, gnl|oryCun1|scaffold_210917 (81576-80519)
               

               
               860-1524, gnl|panTro1|chr5 (77435213-77436270)
               

               
               860-1524, gnl|rheMac2|chr4 (71457056-71458113)
               

               
               860-1524, gnl|rn3|chr8 (84896428-84897485)
               

               
               860-1524, gnl|tetNig1|chr10 (2573083-2574124)
               

               
               860-1524, gnl|xenTro1|scaffold_166 (395936-396993)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ssp (0.271039)
               

               
               hea (0.204499)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.271039)
               

               
               hea (0.204499)

	899-1178, - strand, RNAz p=0.905646
	1136-1253, + strand, RNAz p=0.765703
	1259-1524, + strand, RNAz p=0.811584

	860-1524, gnl\|bosTau2\|chr9 (7346294-7346958)
	860-1524, gnl\|canFam2\|chr12 (39965137-39966194)
	860-1524, gnl\|danRer3\|chrNA (23814652-23815682)
	860-1524, gnl\|dasNov1\|scaffold_44278 (3956-2898)
	860-1524, gnl\|echTel1\|scaffold_297258 (1699-642)
	860-1524, gnl\|fr1\|chrUn (67097246-67098294)
	860-1524, gnl\|galGal2\|chr3 (79078416-79077359)
	860-1524, gnl\|hg17\|chr6 (76080371-76081428)
	860-1524, gnl\|Hg17\|chr6 (76081640-76080976)
	860-1524, gnl\|loxAfr1\|scaffold_4387 (40199-41256)
	860-1524, gnl\|mm7\|chr9 (79895823-79896880)
	860-1524, gnl\|Mm7\|chr9 (79897092-79896428)
	860-1524, gnl\|monDom2\|scaffold_0 (158056130-158055073)
	860-1524, gnl\|oryCun1\|scaffold_210917 (81576-80519)
	860-1524, gnl\|panTro1\|chr5 (77435213-77436270)
	860-1524, gnl\|rheMac2\|chr4 (71457056-71458113)
	860-1524, gnl\|rn3\|chr8 (84896428-84897485)
	860-1524, gnl\|tetNig1\|chr10 (2573083-2574124)
	860-1524, gnl\|xenTro1\|scaffold_166 (395936-396993)