Non-Coding RNA Search

Ss1.1-Mixc-0033n02.3

Sequence:


               
               CTACACCACAGCCATAGCAATGCCAGATCCAAGCCGTGTCTGTGATCTATACTACAGCTC
ATGGCAACACTGGATCCATAACCCACTGAGTGAGGCCAGGGAGCATACCCTCGTCCTCAT
GGATACTAGTCAGGTTGTTTCCACTGCACCACAACAGGAACTTTAGAACTATTTTCAACA
CTAAAGAAAGATAAATCATTAGTTAGAAAACAATGAGATTATATAAGCATTCCAAACCCA
AATGGCACTACAGGGATCAGAAGGGTCACACTGGCAATGCAGCCTGTGACAAACTGGAAA
CATCTGAGTAGGCCAGACTAAATATACCTACAAAGCTGTCTTAGGCTGTACACAAACAAA
AACATCAGTCCTCCTTCCCCTGCACAGACTGAGTCCATTTACTTGTGTACCTGTCAGGGT
AAGTTGGTGGGATTATCTATTTTTTGAATAGGCCTCAGAAACACCTGCTTTTATTCTTCT
GCTGTTTCACCTATCTGCAGTAGGATGGTGAAAACAGAGTAAGAACTTCAGCTGGAGAAC
CACCAGCCAGGCCTTTAACAAGGCCTGCAGGAAATCCACCAACAAAGGAAATAGAAAAAA
AATCCAGACATTATGATTTGGCCATTGTCCGAGACATCGGTTTCCCCTAATACATTCCAA
GTAAACCAGGTAAAATAAGTGTTAGAAGTAATGTCTGCATATAAGAATTTAAGGCATGAC
AGCTTCTGCTGTTCTGCCATTCCCGTTGTTTCTGGGGGAAAGGGTACTACTCAGTGAGTT
ACGCTGTTTCTCTGAGCCCAGGATGGAAACTTGGTTGGACCTCAAAGCATCTAATTAGCA
TAGCTGGCTGATTTTTTTACAAGCTCACTACACTGAAGGATGTTTTGCATGTCTGCAACT
TCTGTCAATTGTTTGTATTAATTTCTGGTGTTCTTTCAACTGACTTTCTATGTGTAACTG
GGCAGATAAGCTTTATAGCAGATTATGCTCTATCTTTATAGCAGAATCTTGTATTCTTAG
TGATTGTTATAAACCCCGTTATTGCTGTCTGAGAAAGCAAAAGACTGTATTTCTATTAAA
TATTTACAATCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACACCACAGCCATAGCAATGCCAGATCCAAGCCGTGTCTGTGATCTATACTACAGCTC
ATGGCAACACTGGATCCATAACCCACTGAGTGAGGCCAGGGAGCATACCCTCGTCCTCAT
GGATACTAGTCAGGTTGTTTCCACTGCACCACAACAGGAACTTTAGAACTATTTTCAACA
CTAAAGAAAGATAAATCATTAGTTAGAAAACAATGAGATTATATAAGCATTCCAAACCCA
AATGGCACTACAGGGATCAGAAGGGTCACACTGGCAATGCAGCCTGTGACAAACTGGAAA
CATCTGAGTAGGCCAGACTAAATATACCTACAAAGCTGTCTTAGGCTGTACACAAACAAA
AACATCAGTCCTCCTTCCCCTGCACAGACTGAGTCCATTTACTTGTGTACCTGTCAGGGT
AAGTTGGTGGGATTATCTATTTTTTGAATAGGCCTCAGAAACACCTGCTTTTATTCTTCT
GCTGTTTCACCTATCTGCAGTAGGATGGTGAAAACAGAGTAAGAACTTCAGCTGGAGAAC
CACCAGCCAGGCCTTTAACAAGGCCTGCAGGAAATCCACCAACAAAGGAAATAGAAAAAA
AATCCAGACATTATGATTTGGCCATTGTCCGAGACATCGGTTTCCCCTAATACATTCCAA
GTAAACCAGGTAAAATAAGTGTTAGAAGTAATGTCTGCATATAAGAATTTAAGGCATGAC
AGCTTCTGCTGTTCTGCCATTCCCGTTGTTTCTGGGGGAAAGGGTACTACTCAGTGAGTT
ACGCTGTTTCTCTGAGCCCAGGATGGAAACTTGGTTGGACCTCAAAGCATCTAATTAGCA
TAGCTGGCTGATTTTTTTACAAGCTCACTACACTGAAGGATGTTTTGCATGTCTGCAACT
TCTGTCAATTGTTTGTATTAATTTCTGGTGTTCTTTCAACTGACTTTCTATGTGTAACTG
GGCAGATAAGCTTTATAGCAGATTATGCTCTATCTTTATAGCAGAATCTTGTATTCTTAG
TGATTGTTATAAACCCCGTTATTGCTGTCTGAGAAAGCAAAAGACTGTATTTCTATTAAA
TATTTACAATCAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               169-1095, gnl|bosTau2|chr10 (9062503-9063403)
               

               
               169-1095, gnl|Hg17|chr15 (63656468-63657740)
               

               
               169-1095, gnl|Mm7|chr9 (65017560-65016630)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               169-1095, gnl|bosTau2|chr10 (9062503-9063403)
               

               
               169-1095, gnl|Hg17|chr15 (63656468-63657740)
               

               
               169-1095, gnl|Mm7|chr9 (65017560-65016630)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               mgp (0.461361)
               

               
               lun (0.300978)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               lun (0.300978)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	169-1095, gnl\|bosTau2\|chr10 (9062503-9063403)
	169-1095, gnl\|Hg17\|chr15 (63656468-63657740)
	169-1095, gnl\|Mm7\|chr9 (65017560-65016630)

	mgp (0.461361)
	lun (0.300978)
	kid (0.259471)
	sug (0.254582)
	cbe (0.239234)
	pgl (0.236967)
	tes (0.207814)
	fbs (0.175346)
	fhi (0.169578)
	fco (0.157208)
	cli (0.152812)
	isp (0.150376)
	pty (0.142714)
	csk (0.140746)
	ebs (0.118301)
	spc (0.113366)
	cty (0.10408)