Non-Coding RNA Search

Ss1.1-Mixc-0033n05.3.5

Sequence:


               
               TGATTTCAGATAACTCATGCCAGAGAACTTAAATACTTAGGATGGAAAAACTAAAGAAAT
CTCACCTCCCAAGTTGGCAAGTAACTCCTGATCCTCTAGTTTCTTGTTTTACCCCAATTT
TTGAACTGGACAGCTGGGAACTTCAAAGATTCACTGGATTTAAAGTGTAGGGCTTGGGAA
AGGAAAGTGTTGGATTGGGGGTTGGTCTAGCCCACTGGGTTGACCAAGATAAAAACTTGG
GGAATTGTTTAAACACTAAAGTTGTTTGGATATGGTAGTGTGTGGTTCTCTTTTGGAATT
TTTTTCAGGTGATTTAATAAAACTTAATACTACTATAGGAGCTTCAGAGCAAAGGAAGTG
GCTTAATGATCCTGAAGGGATTTCTTCTGATGGTAGCTTTTATATTATCAAGTAAGATTC
TATTTTCAGTTACATAAGCAAGTTTTTTAGTATAGGAAATTTTTGTATGGCTGCGAGACA
AGATGTAAAGGTATGCTTCAAAATTGTTGTAAATTGTGTATTGAATTTGCACCTAAGTAT
TTGTAAATCATAATCAATTAAAAGGGGTGGGTTTTTGTTGATGGGGGGGAAACCTTTTTT
TTCTGTAGACTTTTTTCAGATAACATCTTCTGAGTCATACCCAGCCTGGCAATATGATGG
CCTAGATGGAGAGGGGAACAGCTCCTTGGTGAATGATAAGTAAAGGCAGAAAAGATTATA
TTTCATACCTATCTTCATTGGGCAAAAGCATAACTCTGAAATCCTTACTACTGATGAACT
CATGGTCTGCATATGCAAAAAAAAAATTTAAGCAAATGAAAGCTACCAATTTAAAGTTAA
TGGAATCTACTCTTAAAGTTATGGCATATCAAGCTGTATCCACAAAAATAATGAATCGAT
GAGAAATAAAATAATGAAATGATGAGAAATACCATGAAGATCTAATGCCCACCTCAAAAT
ACTGCTTTTACAAAAGCAGAATAAAAAATGAAATGAAATGAAAATGATAAAGCTACACAT
TAACCCTGGAATAAAAGAAGCTGAAATAATTGAAAGGAGTGGGATCAAGTGGATTGAGAG
GAAGCTGTGCTGTTTGCCAATCTTTCGTTTGCCTCAGACAGGTTTCTCTATCAGAAGAGT
TGCTTCATATCATCTGGGAGCAGAAAACAGCAGGCAGCTGTTCACAGATAAGTTTAACTT
GCATCTGCAGTATTGCATGTTAGGGATAAGTGCTATGTTTAATAAGAGCTGTGGAGGTCC
TAGGTCCCTTACTCAAGGGATCTCAGGATTTTGAGGAATTTTCCCATCCAGCCTTTTAAA
ATGAGACAGGCCTTATGCCTGTGGGCTTCCATGATGGGCTAACTCACTTCACTCGAGGCA
AGTAATTCCTTAAAGCCTCTTGAGATTAATACCTTAATAATCAAGGATAATGTTGATAAA
ATAAAAATTTGTTTAGCATTGATTCTTGAAAACCCTATGAAAAGATAGCATAATGTGCTG
TTAACCAGAATCAGATATGTTAACCTTGCTAAAATTTAAATGTTATGTGTATTGTGCAGA
AAACCGTAAAATCACTCAAAATAAAATACTTTATTTAGCGAATGTATGCTTTTAGAAAGC
TGTCTCCTTATTTAAATAAAATATTGTTTGTCTGTAGTTAGTGTTGGGCAATCTTGGGGG
GATTCTTCTCATCTTTCAGAGACTTTGTCTGCGAACACTCTGTAATGGACAAGATCAGGA
ATTGAGCTGAAGAACGAATTTAACTTAAGGCAGGAAAGACAAATTTTATCCTTCGTAAAA
TTGATGACCATTTAATAATTCCAGGCACATGGCCATAGAGACCCTCTAAATAAATAAGGA
ATAAATACTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATTTCAGATAACTCATGCCAGAGAACTTAAATACTTAGGATGGAAAAACTAAAGAAAT
CTCACCTCCCAAGTTGGCAAGTAACTCCTGATCCTCTAGTTTCTTGTTTTACCCCAATTT
TTGAACTGGACAGCTGGGAACTTCAAAGATTCACTGGATTTAAAGTGTAGGGCTTGGGAA
AGGAAAGTGTTGGATTGGGGGTTGGTCTAGCCCACTGGGTTGACCAAGATAAAAACTTGG
GGAATTGTTTAAACACTAAAGTTGTTTGGATATGGTAGTGTGTGGTTCTCTTTTGGAATT
TTTTTCAGGTGATTTAATAAAACTTAATACTACTATAGGAGCTTCAGAGCAAAGGAAGTG
GCTTAATGATCCTGAAGGGATTTCTTCTGATGGTAGCTTTTATATTATCAAGTAAGATTC
TATTTTCAGTTACATAAGCAAGTTTTTTAGTATAGGAAATTTTTGTATGGCTGCGAGACA
AGATGTAAAGGTATGCTTCAAAATTGTTGTAAATTGTGTATTGAATTTGCACCTAAGTAT
TTGTAAATCATAATCAATTAAAAGGGGTGGGTTTTTGTTGATGGGGGGGAAACCTTTTTT
TTCTGTAGACTTTTTTCAGATAACATCTTCTGAGTCATACCCAGCCTGGCAATATGATGG
CCTAGATGGAGAGGGGAACAGCTCCTTGGTGAATGATAAGTAAAGGCAGAAAAGATTATA
TTTCATACCTATCTTCATTGGGCAAAAGCATAACTCTGAAATCCTTACTACTGATGAACT
CATGGTCTGCATATGCAAAAAAAAAATTTAAGCAAATGAAAGCTACCAATTTAAAGTTAA
TGGAATCTACTCTTAAAGTTATGGCATATCAAGCTGTATCCACAAAAATAATGAATCGAT
GAGAAATAAAATAATGAAATGATGAGAAATACCATGAAGATCTAATGCCCACCTCAAAAT
ACTGCTTTTACAAAAGCAGAATAAAAAATGAAATGAAATGAAAATGATAAAGCTACACAT
TAACCCTGGAATAAAAGAAGCTGAAATAATTGAAAGGAGTGGGATCAAGTGGATTGAGAG
GAAGCTGTGCTGTTTGCCAATCTTTCGTTTGCCTCAGACAGGTTTCTCTATCAGAAGAGT
TGCTTCATATCATCTGGGAGCAGAAAACAGCAGGCAGCTGTTCACAGATAAGTTTAACTT
GCATCTGCAGTATTGCATGTTAGGGATAAGTGCTATGTTTAATAAGAGCTGTGGAGGTCC
TAGGTCCCTTACTCAAGGGATCTCAGGATTTTGAGGAATTTTCCCATCCAGCCTTTTAAA
ATGAGACAGGCCTTATGCCTGTGGGCTTCCATGATGGGCTAACTCACTTCACTCGAGGCA
AGTAATTCCTTAAAGCCTCTTGAGATTAATACCTTAATAATCAAGGATAATGTTGATAAA
ATAAAAATTTGTTTAGCATTGATTCTTGAAAACCCTATGAAAAGATAGCATAATGTGCTG
TTAACCAGAATCAGATATGTTAACCTTGCTAAAATTTAAATGTTATGTGTATTGTGCAGA
AAACCGTAAAATCACTCAAAATAAAATACTTTATTTAGCGAATGTATGCTTTTAGAAAGC
TGTCTCCTTATTTAAATAAAATATTGTTTGTCTGTAGTTAGTGTTGGGCAATCTTGGGGG
GATTCTTCTCATCTTTCAGAGACTTTGTCTGCGAACACTCTGTAATGGACAAGATCAGGA
ATTGAGCTGAAGAACGAATTTAACTTAAGGCAGGAAAGACAAATTTTATCCTTCGTAAAA
TTGATGACCATTTAATAATTCCAGGCACATGGCCATAGAGACCCTCTAAATAAATAAGGA
ATAAATACTTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7770247|gb|AAF69659.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7770247|gb|AAF69659.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               900-1018, - strand, RNAz p=0.977274
               

               
               1089-1203, - strand, RNAz p=0.898999
               

               
               1265-1400, - strand, RNAz p=0.997538

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               900-1018, - strand, RNAz p=0.977274
               

               
               1089-1203, - strand, RNAz p=0.898999
               

               
               1265-1400, - strand, RNAz p=0.997538

Homologous human UTR: 3 entry(ies)

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Homologous human UTR: 3 entry(ies)

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               3' of AF001542, -
               

               
               3' of AF001542, -
               

               
               3' of AF001542, -

Homologous human UTR: 3 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF001542, -
               

               
               3' of AF001542, -
               

               
               3' of AF001542, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1863, gnl|bosTau2|chr29 (38432003-38430154)
               

               
               1-1863, gnl|Hg17|chr11 (65025974-65027940)
               

               
               1-1863, gnl|Mm7|chr19 (5694777-5692941)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1863, gnl|bosTau2|chr29 (38432003-38430154)
               

               
               1-1863, gnl|Hg17|chr11 (65025974-65027940)
               

               
               1-1863, gnl|Mm7|chr19 (5694777-5692941)

Expressed library(ies): 41 entry(ies)

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Expressed library(ies): 41 entry(ies)

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               liv (1.46284)
               

               
               pro (1.02407)
               

               
               spl (0.715922)
               

               
               sug (0.636456)
               

               
               bla (0.621736)
               

               
               sme (0.610874)
               

               
               csk (0.562984)
               

               
               fbs (0.526039)
               

               
               kid (0.518941)
               

               
               pgl (0.473934)
               

               
               ski (0.440205)
               

               
               pla (0.401016)
               

               
               fty (0.351679)
               

               
               sin (0.349895)
               

               
               med (0.348756)
               

               
               eye (0.341006)
               

               
               cty (0.31224)
               

               
               tbr (0.308356)
               

               
               cte (0.29274)
               

               
               pty (0.285429)
               

               
               hlv (0.278513)
               

               
               ssp (0.271039)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 41 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (1.46284)
               

               
               pro (1.02407)
               

               
               spl (0.715922)
               

               
               sug (0.636456)
               

               
               bla (0.621736)
               

               
               sme (0.610874)
               

               
               csk (0.562984)
               

               
               fbs (0.526039)
               

               
               kid (0.518941)
               

               
               pgl (0.473934)
               

               
               ski (0.440205)
               

               
               pla (0.401016)
               

               
               fty (0.351679)
               

               
               sin (0.349895)
               

               
               med (0.348756)
               

               
               eye (0.341006)
               

               
               cty (0.31224)
               

               
               tbr (0.308356)
               

               
               cte (0.29274)
               

               
               pty (0.285429)
               

               
               hlv (0.278513)
               

               
               ssp (0.271039)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	900-1018, - strand, RNAz p=0.977274
	1089-1203, - strand, RNAz p=0.898999
	1265-1400, - strand, RNAz p=0.997538

	1-1863, gnl\|bosTau2\|chr29 (38432003-38430154)
	1-1863, gnl\|Hg17\|chr11 (65025974-65027940)
	1-1863, gnl\|Mm7\|chr19 (5694777-5692941)

	liv (1.46284)
	pro (1.02407)
	spl (0.715922)
	sug (0.636456)
	bla (0.621736)
	sme (0.610874)
	csk (0.562984)
	fbs (0.526039)
	kid (0.518941)
	pgl (0.473934)
	ski (0.440205)
	pla (0.401016)
	fty (0.351679)
	sin (0.349895)
	med (0.348756)
	eye (0.341006)
	cty (0.31224)
	tbr (0.308356)
	cte (0.29274)
	pty (0.285429)
	hlv (0.278513)
	ssp (0.271039)
	cbe (0.239234)
	tes (0.207814)
	ldo (0.194005)
	cmu (0.186393)
	nep (0.183925)
	gul (0.177588)
	ill (0.175593)
	rec (0.17307)
	fhi (0.169578)
	nje (0.16592)
	mga (0.160205)
	isp (0.150376)
	lnt (0.142308)
	lyg (0.133103)
	thg (0.126791)
	tra (0.123092)
	clu (0.119646)
	jej (0.0989218)
	eje (0.0988338)