Non-Coding RNA Search

Ss1.1-Mixc-0033n07.3

Sequence:


               
               TTGGAACGTGGTGGTCCATGACTGGCTGTACAGCTACGTGTATCAGGATGCGCTGTGGCT
CCTCGGTGGCCGTGCCCGAGGGGCAGCCATGCTGAGCGTGTTCCTGGTCTCTGCCCTGGT
CCATGAGTACATCTTCTGCTTCGTCCTGGGATTCTTCTACCCTGTCATGCTGGTGCTCTT
CCTTGTCTTTGGAGGGCTGCTGAACTTCACGATGCACGACCAGCACACCGGCCCGGCGTG
GAACGTGCTCATATGGACCATGCTCTTTCTGGGCCAGGGCATCCTGGTCAGCCTGTACTG
CCAGGAGTGGTACGCACGGCGTCACTGCCCCCTGACCCAGACAACCTTCTGGGGGCTGGT
GACCCCTCGATCCTGGTCCTGCCATACCTAGAGGTCAGAGCATCCTCACTGCCCAGAGGA
CACCACCAAGTTCTTCTGAGCCTGTAAAGCCTGGGACCGGGGTTCCTCTCTGCATCCCCA
GACCTAGCTCTGGGTCAAGGGGGCCTGCCATGCCTGCCCCCCTCCCCCAGGGAACTCCAG
GGACTGAGCTCTGTGGACCTGTGGACAGGCGAGCACAGGCTCAGAATGGTGGTTCTTGAG
CCCCCATCCATGGATGGGGCAAGGGCCCCCTCTCACTTCATGGCTGTTCAGAGTTGGGGA
GACTTGAAGGACCTCACAGAACGGGTAAATGTGGGGTGACTTAGAGCAACTGGGATGGGT
TTTTTCTTTGTACTCTCTCCAAAGCAATAATAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGAACGTGGTGGTCCATGACTGGCTGTACAGCTACGTGTATCAGGATGCGCTGTGGCT
CCTCGGTGGCCGTGCCCGAGGGGCAGCCATGCTGAGCGTGTTCCTGGTCTCTGCCCTGGT
CCATGAGTACATCTTCTGCTTCGTCCTGGGATTCTTCTACCCTGTCATGCTGGTGCTCTT
CCTTGTCTTTGGAGGGCTGCTGAACTTCACGATGCACGACCAGCACACCGGCCCGGCGTG
GAACGTGCTCATATGGACCATGCTCTTTCTGGGCCAGGGCATCCTGGTCAGCCTGTACTG
CCAGGAGTGGTACGCACGGCGTCACTGCCCCCTGACCCAGACAACCTTCTGGGGGCTGGT
GACCCCTCGATCCTGGTCCTGCCATACCTAGAGGTCAGAGCATCCTCACTGCCCAGAGGA
CACCACCAAGTTCTTCTGAGCCTGTAAAGCCTGGGACCGGGGTTCCTCTCTGCATCCCCA
GACCTAGCTCTGGGTCAAGGGGGCCTGCCATGCCTGCCCCCCTCCCCCAGGGAACTCCAG
GGACTGAGCTCTGTGGACCTGTGGACAGGCGAGCACAGGCTCAGAATGGTGGTTCTTGAG
CCCCCATCCATGGATGGGGCAAGGGCCCCCTCTCACTTCATGGCTGTTCAGAGTTGGGGA
GACTTGAAGGACCTCACAGAACGGGTAAATGTGGGGTGACTTAGAGCAACTGGGATGGGT
TTTTTCTTTGTACTCTCTCCAAAGCAATAATAAACT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61880869|ref|XP_593258.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61880869|ref|XP_593258.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               322-438, - strand, RNAz p=0.671277
               

               
               519-621, - strand, RNAz p=0.792039

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               322-438, - strand, RNAz p=0.671277
               

               
               519-621, - strand, RNAz p=0.792039

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               58-195, gnl|bosTau2|chr5 (20549726-20549863)
               

               
               58-195, gnl|Hg17|chr12 (51803131-51803268)
               

               
               58-195, gnl|Mm7|chr15 (102148165-102148302)
               


               
               322-709, gnl|bosTau2|chr5 (20550698-20551079)
               

               
               322-709, gnl|Hg17|chr12 (51804105-51804498)
               

               
               322-709, gnl|Mm7|chr15 (102149036-102149370)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-195, gnl|bosTau2|chr5 (20549726-20549863)
               

               
               58-195, gnl|Hg17|chr12 (51803131-51803268)
               

               
               58-195, gnl|Mm7|chr15 (102148165-102148302)
               


               
               322-709, gnl|bosTau2|chr5 (20550698-20551079)
               

               
               322-709, gnl|Hg17|chr12 (51804105-51804498)
               

               
               322-709, gnl|Mm7|chr15 (102149036-102149370)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               jej (0.197844)
               

               
               nje (0.16592)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               nje (0.16592)
               

               
               eje (0.0988338)

	322-438, - strand, RNAz p=0.671277
	519-621, - strand, RNAz p=0.792039

	58-195, gnl\|bosTau2\|chr5 (20549726-20549863)
	58-195, gnl\|Hg17\|chr12 (51803131-51803268)
	58-195, gnl\|Mm7\|chr15 (102148165-102148302)

	322-709, gnl\|bosTau2\|chr5 (20550698-20551079)
	322-709, gnl\|Hg17\|chr12 (51804105-51804498)
	322-709, gnl\|Mm7\|chr15 (102149036-102149370)