Non-Coding RNA Search

Ss1.1-Mixc-0033o03.5.5

Sequence:


               
               CTAAGTTGATGGAAAGTTGTAGGAGTGACTGGTTTAGAACACCCGAGTCCCATGCCCCAC
CCTGCTGATTGAAACATTATTGTGTGCAGGAATGCAGTGATTTGAAACTATGCCTGCCTT
CAGCCCAGGTGGAACTGGGCTACAAGAAATTTGTAAACTGGAGATAAGGGGTGACCTCTG
GCCACAGGCTGGATCCCACCCCACTGATACCTTCAAGCCCCTTCAAGGGTTTCTCTTTGC
AGAAGTTTTTGAGCTTGGAATTAAAATGAATTCTCTGACAGACTGTCTGTCCCCTTAGAG
CTATCTATCTTCCTCTAAAATGCAATAAAAGAGGCTTTTTTATTTAAAGGAAAAGGGAAT
GACCCAGTCCACTTACTCCTTCCCCGGGAAGTCCCTTTGCTGCCCCCTGCTGGCCAGGGT
GGCTCCTCCACTGTCCAGTCCAGGAGGATCAGACTCCCGAGCTGGTGAGATGCTATGTTG
GTATCAAATTAAAGTTTAATTCCACAGGGGTGGCAGGGCTCTTCAGAACTCCAAGAGGCT
ACTCCTGGCTTAATGATGTTGTCCCAAGTCACCCAAATGTCAGTTTGCTTTTTGTGTTAT
TAGGATTTCAGCCTCTTAACTTCCCTGTATAGATTTAGAATTTTATTTCCTCTCCTAGCT
TGGCCCTATTCTGGATAGACTGTAGTTGTTGAAAATAGAGGAATGTGTTGGAGTCCAGTG
TCTTTTTAAGATCCTTTGGATTCTCTGCAGCTGAATTGCAGTCTTATCCTTCTGTAAGTA
TTGGCATTTACCTTCTTCAAAGCATCATTTCCTCTATTTTCCCGGATTCTGCGGCACCTT
AGGATTACACCCTGAGTCCCCTGCAGCTGGTGAGGCATGACAGGGACAGAAGGGTAACCC
TGTCATCACATGGTGGGCAGGACCCTGTGTCTGTGGGGGTGGTCTGGGTGCCCAGAGCAC
TTGCAGTGCTGGAGTCTCCCTGGGACAGCCGGGCGGGAGCCTAGCACAGTCAGCCATGTC
CACCGAGGCTCCAGTGGAGCAAACTTGGGAAACCTTTGCTCACTGTCCTGTCTAGCAGGA
CAAGCAAGAGTGGAACGATCGATGCCAAAGGAGAGGGTGACGTCCCTTCTGCTGTAGTTG
CTGTCACAACCTCGATGTCTGTAAGCTAATGGCCGTTCGTGTTTATGTCTTCAACCAGCA
ACTGGTACGACCATTTTCTACTGTTCACTTCCGGGGTTAAGTAGTGCAGGAGTCTGCAAA
TAAGGTGTTGTTGTCCAATGTACTGTACCAGTGTAGAGAGCACTGCTTTGTTTTCCACTG
TTGTAGAGAAAACTAGGGAGAACTTTATTTTTCAATAAACTTTTCTTGTGTGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAGTTGATGGAAAGTTGTAGGAGTGACTGGTTTAGAACACCCGAGTCCCATGCCCCAC
CCTGCTGATTGAAACATTATTGTGTGCAGGAATGCAGTGATTTGAAACTATGCCTGCCTT
CAGCCCAGGTGGAACTGGGCTACAAGAAATTTGTAAACTGGAGATAAGGGGTGACCTCTG
GCCACAGGCTGGATCCCACCCCACTGATACCTTCAAGCCCCTTCAAGGGTTTCTCTTTGC
AGAAGTTTTTGAGCTTGGAATTAAAATGAATTCTCTGACAGACTGTCTGTCCCCTTAGAG
CTATCTATCTTCCTCTAAAATGCAATAAAAGAGGCTTTTTTATTTAAAGGAAAAGGGAAT
GACCCAGTCCACTTACTCCTTCCCCGGGAAGTCCCTTTGCTGCCCCCTGCTGGCCAGGGT
GGCTCCTCCACTGTCCAGTCCAGGAGGATCAGACTCCCGAGCTGGTGAGATGCTATGTTG
GTATCAAATTAAAGTTTAATTCCACAGGGGTGGCAGGGCTCTTCAGAACTCCAAGAGGCT
ACTCCTGGCTTAATGATGTTGTCCCAAGTCACCCAAATGTCAGTTTGCTTTTTGTGTTAT
TAGGATTTCAGCCTCTTAACTTCCCTGTATAGATTTAGAATTTTATTTCCTCTCCTAGCT
TGGCCCTATTCTGGATAGACTGTAGTTGTTGAAAATAGAGGAATGTGTTGGAGTCCAGTG
TCTTTTTAAGATCCTTTGGATTCTCTGCAGCTGAATTGCAGTCTTATCCTTCTGTAAGTA
TTGGCATTTACCTTCTTCAAAGCATCATTTCCTCTATTTTCCCGGATTCTGCGGCACCTT
AGGATTACACCCTGAGTCCCCTGCAGCTGGTGAGGCATGACAGGGACAGAAGGGTAACCC
TGTCATCACATGGTGGGCAGGACCCTGTGTCTGTGGGGGTGGTCTGGGTGCCCAGAGCAC
TTGCAGTGCTGGAGTCTCCCTGGGACAGCCGGGCGGGAGCCTAGCACAGTCAGCCATGTC
CACCGAGGCTCCAGTGGAGCAAACTTGGGAAACCTTTGCTCACTGTCCTGTCTAGCAGGA
CAAGCAAGAGTGGAACGATCGATGCCAAAGGAGAGGGTGACGTCCCTTCTGCTGTAGTTG
CTGTCACAACCTCGATGTCTGTAAGCTAATGGCCGTTCGTGTTTATGTCTTCAACCAGCA
ACTGGTACGACCATTTTCTACTGTTCACTTCCGGGGTTAAGTAGTGCAGGAGTCTGCAAA
TAAGGTGTTGTTGTCCAATGTACTGTACCAGTGTAGAGAGCACTGCTTTGTTTTCCACTG
TTGTAGAGAAAACTAGGGAGAACTTTATTTTTCAATAAACTTTTCTTGTGTGAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               336-451, - strand, RNAz p=0.786881

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               336-451, - strand, RNAz p=0.786881

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-593, gnl|bosTau2|chr2 (39001316-39000732)
               

               
               3-593, gnl|Hg17|chr2 (135044497-135045145)
               

               
               3-593, gnl|Mm7|chr1 (127366042-127366595)
               


               
               608-1373, gnl|bosTau2|chr2 (39000700-38999946)
               

               
               608-1373, gnl|Hg17|chr2 (135045163-135045924)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-593, gnl|bosTau2|chr2 (39001316-39000732)
               

               
               3-593, gnl|Hg17|chr2 (135044497-135045145)
               

               
               3-593, gnl|Mm7|chr1 (127366042-127366595)
               


               
               608-1373, gnl|bosTau2|chr2 (39000700-38999946)
               

               
               608-1373, gnl|Hg17|chr2 (135045163-135045924)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               clu (1.07681)
               

               
               cje (0.660939)
               

               
               hyp (0.42851)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               cty (0.10408)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (1.07681)
               

               
               cje (0.660939)
               

               
               hyp (0.42851)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               cty (0.10408)

	3-593, gnl\|bosTau2\|chr2 (39001316-39000732)
	3-593, gnl\|Hg17\|chr2 (135044497-135045145)
	3-593, gnl\|Mm7\|chr1 (127366042-127366595)

	608-1373, gnl\|bosTau2\|chr2 (39000700-38999946)
	608-1373, gnl\|Hg17\|chr2 (135045163-135045924)

	clu (1.07681)
	cje (0.660939)
	hyp (0.42851)
	ece (0.229305)
	cmu (0.186393)
	fbs (0.175346)
	cut (0.169924)
	cki (0.165235)
	fco (0.157208)
	liv (0.146284)
	lnt (0.142308)
	thg (0.126791)
	cty (0.10408)