Non-Coding RNA Search

Ss1.1-Mixc-0033p02.3

Sequence:


               
               TTTTAAAGAAGCAGCCGTTGAATTGCTTAAATAAGCTATGTATTAAATCTCTTCAGTTAG
GGCTATCTTCATAGCATTGGACTCTTACGTAGCATGGGGGATGTGTTATAACAGTAAAAT
TCTCCTTTAATCACTGCCCTCTCCTTCTTGCCCCTCAACATGCTCTCCCCTCAGTGCTGG
CATTTTCTGAATCTAGAGATGCCAGGGTTTTGTTCTGGTTTTTTTTTTCCCAGTGTAATT
TTAGATTTGCTTTACAATGTAAATCTTCACATTGGAGGTATATTGGTAATATCTTGCTCA
TCCCTTTTCAAGCTTTCATATTTGTGAAGGACTCAACTCCCTTCCTTTTGTACCCCACGC
TATTTCACCAAATTTCTCATCATTGAGGGCACTTGGATAACTGAAGTTGGTATTTATAGC
TGATCAATCTATAGGTGTCACAGAACTATGCTGCCTAAAGTGATCTTGGCTCCTTAATGC
TTTTTGGCCCCTTGGTTAGTTAACAGCTAAGTAATTCTAACTTTCCTGTGTTTTCATTGC
CTTAACCACAAATTGTGGTGCTTTTGTATATTTTATGTATAAATCACAAAGTTGAATTCT
GACTATTTTTAAGACAAAAGTCTGTTAAACTTTTTTATTGTAAAGAATATTTATTATGCG
AATCTCTATTATTTTATGATATTTATTGCAAAAGACTGTTGATATGTACTCATGTCTGAA
TATAACAAAATATCAATACGTAACGGAAAATAAGGTGACACGAAGAAAGTACATATGTTA
ACTATAATGCAGAAAATATATTAATTAATGAAACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAAAGAAGCAGCCGTTGAATTGCTTAAATAAGCTATGTATTAAATCTCTTCAGTTAG
GGCTATCTTCATAGCATTGGACTCTTACGTAGCATGGGGGATGTGTTATAACAGTAAAAT
TCTCCTTTAATCACTGCCCTCTCCTTCTTGCCCCTCAACATGCTCTCCCCTCAGTGCTGG
CATTTTCTGAATCTAGAGATGCCAGGGTTTTGTTCTGGTTTTTTTTTTCCCAGTGTAATT
TTAGATTTGCTTTACAATGTAAATCTTCACATTGGAGGTATATTGGTAATATCTTGCTCA
TCCCTTTTCAAGCTTTCATATTTGTGAAGGACTCAACTCCCTTCCTTTTGTACCCCACGC
TATTTCACCAAATTTCTCATCATTGAGGGCACTTGGATAACTGAAGTTGGTATTTATAGC
TGATCAATCTATAGGTGTCACAGAACTATGCTGCCTAAAGTGATCTTGGCTCCTTAATGC
TTTTTGGCCCCTTGGTTAGTTAACAGCTAAGTAATTCTAACTTTCCTGTGTTTTCATTGC
CTTAACCACAAATTGTGGTGCTTTTGTATATTTTATGTATAAATCACAAAGTTGAATTCT
GACTATTTTTAAGACAAAAGTCTGTTAAACTTTTTTATTGTAAAGAATATTTATTATGCG
AATCTCTATTATTTTATGATATTTATTGCAAAAGACTGTTGATATGTACTCATGTCTGAA
TATAACAAAATATCAATACGTAACGGAAAATAAGGTGACACGAAGAAAGTACATATGTTA
ACTATAATGCAGAAAATATATTAATTAATGAAACTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-816, gnl|bosTau2|chr17 (19512251-19513063)
               

               
               2-816, gnl|Hg17|chr4 (124681697-124682518)
               

               
               2-816, gnl|Mm7|chr3 (37454625-37455377)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-816, gnl|bosTau2|chr17 (19512251-19513063)
               

               
               2-816, gnl|Hg17|chr4 (124681697-124682518)
               

               
               2-816, gnl|Mm7|chr3 (37454625-37455377)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               fat (0.294855)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               ski (0.146735)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               ski (0.146735)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

	2-816, gnl\|bosTau2\|chr17 (19512251-19513063)
	2-816, gnl\|Hg17\|chr4 (124681697-124682518)
	2-816, gnl\|Mm7\|chr3 (37454625-37455377)

	fat (0.294855)
	bla (0.248694)
	nms (0.213858)
	hea (0.204499)
	ski (0.146735)
	tra (0.123092)
	pgl (0.118483)