Non-Coding RNA Search

Ss1.1-Mixc-0033p17.5

Sequence:


               
               GCAGAAGAATTAGAGGTAAAGGAAATGATTGTATTGCTCATAGCCATTTAGGCTAAAAGA
AAGTTGAAAGCTTATGAAATAATTGCCAAGAGATTGTTGTGTGTTTGGTCCCTGGCTAAT
GATTTTATAGTGTTGAAATCATAGCTACTTGACACATCTTTCTTAGTTTTTGGAGCTCTA
GGTCTTCATATGGATTTATGTATTTGTGTGTGTGTGTGGTTTCTCTTCCTTACACTCATC
TTTAGAGATTGACTAATACCTCATTCTGTTTATAAAAACAGCCAGTAATTTCTGTGCAAC
CTTATTATGTGCAATATTTTTAAATCCTAAGAAATGTGTGCTTTTGTTTTCAGATAGACT
TAACTTCTTTAGTTCTGCACTTTTCCATGTTATACTCCATATGAGTATTAATCCTATGGA
TACATATTAAAACTAGTAAATATCTCATACAATTTTGTGAGTGAGAGAAATATAGTATTT
ACAATATGATGTTCTTTGTTGTCATTTTATTGTTAAAAGTTTAGCCATTCTGGATGTATG
GAGGGTGTATAAGCATTTGGGCTGCTTATACTGATCATAGATCACAAGTTACTTTTGACT
AACCTGAAAACCCTGAAATGACCTTGTTTGCCACTTGGTAATTTTTCTTGCTTTCTCATT
GTCCTTCATCCTTTCATCACAAGTTTTGGTAGCTTAAAGATTTGATTTTGGTGTATTTGC
TTGCTAGACCAAGTATTCTTGCCATTGGTTCTTTTCTCTTTCGGCCTCTTTGGGAAAAAG
CAAACTTTACATGAAGCTATATTTGTTAGTAATCATCTTTAATTTAAATCTGTGAAGAAA
ATGAGTTTGTTCTATTATATTTATGTATCTTAATTGCTTCCTGGAAGTTATGTCTTTTAT
TTTTGTTTGATAATAAGAAAAAAGCCATACCTTGAGTTTTGGTCTGAGAATTATCTATGG
CCTATTAAACAGAACAAATGAAGCCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGAAGAATTAGAGGTAAAGGAAATGATTGTATTGCTCATAGCCATTTAGGCTAAAAGA
AAGTTGAAAGCTTATGAAATAATTGCCAAGAGATTGTTGTGTGTTTGGTCCCTGGCTAAT
GATTTTATAGTGTTGAAATCATAGCTACTTGACACATCTTTCTTAGTTTTTGGAGCTCTA
GGTCTTCATATGGATTTATGTATTTGTGTGTGTGTGTGGTTTCTCTTCCTTACACTCATC
TTTAGAGATTGACTAATACCTCATTCTGTTTATAAAAACAGCCAGTAATTTCTGTGCAAC
CTTATTATGTGCAATATTTTTAAATCCTAAGAAATGTGTGCTTTTGTTTTCAGATAGACT
TAACTTCTTTAGTTCTGCACTTTTCCATGTTATACTCCATATGAGTATTAATCCTATGGA
TACATATTAAAACTAGTAAATATCTCATACAATTTTGTGAGTGAGAGAAATATAGTATTT
ACAATATGATGTTCTTTGTTGTCATTTTATTGTTAAAAGTTTAGCCATTCTGGATGTATG
GAGGGTGTATAAGCATTTGGGCTGCTTATACTGATCATAGATCACAAGTTACTTTTGACT
AACCTGAAAACCCTGAAATGACCTTGTTTGCCACTTGGTAATTTTTCTTGCTTTCTCATT
GTCCTTCATCCTTTCATCACAAGTTTTGGTAGCTTAAAGATTTGATTTTGGTGTATTTGC
TTGCTAGACCAAGTATTCTTGCCATTGGTTCTTTTCTCTTTCGGCCTCTTTGGGAAAAAG
CAAACTTTACATGAAGCTATATTTGTTAGTAATCATCTTTAATTTAAATCTGTGAAGAAA
ATGAGTTTGTTCTATTATATTTATGTATCTTAATTGCTTCCTGGAAGTTATGTCTTTTAT
TTTTGTTTGATAATAAGAAAAAAGCCATACCTTGAGTTTTGGTCTGAGAATTATCTATGG
CCTATTAAACAGAACAAATGAAGCCAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               370-482, + strand, RNAz p=0.63448

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               370-482, + strand, RNAz p=0.63448

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC028912, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC028912, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-581, gnl|bosTau2|chr4 (32320961-32320381)
               

               
               1-581, gnl|Hg17|chr7 (107808291-107808887)
               

               
               1-581, gnl|Mm7|chr12 (42082379-42081803)
               


               
               705-995, gnl|bosTau2|chr4 (32320346-32320063)
               

               
               705-995, gnl|Hg17|chr7 (107809019-107809285)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-581, gnl|bosTau2|chr4 (32320961-32320381)
               

               
               1-581, gnl|Hg17|chr7 (107808291-107808887)
               

               
               1-581, gnl|Mm7|chr12 (42082379-42081803)
               


               
               705-995, gnl|bosTau2|chr4 (32320346-32320063)
               

               
               705-995, gnl|Hg17|chr7 (107809019-107809285)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               bfe (0.299715)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               sug (0.127291)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.299715)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               sug (0.127291)

	1-581, gnl\|bosTau2\|chr4 (32320961-32320381)
	1-581, gnl\|Hg17\|chr7 (107808291-107808887)
	1-581, gnl\|Mm7\|chr12 (42082379-42081803)

	705-995, gnl\|bosTau2\|chr4 (32320346-32320063)
	705-995, gnl\|Hg17\|chr7 (107809019-107809285)

	bfe (0.299715)
	lyg (0.266205)
	kid (0.259471)
	cbe (0.239234)
	ece (0.229305)
	sin (0.174948)
	fco (0.157208)
	lin (0.145603)
	sug (0.127291)