Ss1.1-Mixc-0033p20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCAGGGGCTGGGGTGCTAGACGTCATGTATGAGTCCCCTTCCACACTCCTGTCCTGTGG CTATGACACCTACGTTCGCTACTGGGACCTCCGCACCAGTGTCCGGAAGTGTGTCATGGA GTGGGAGGAGCCCCACGACAGCACCCTGTACTGCCTGCAGACCGATGGCAACCACCTCCT GGCTACCGGCTCCTCCTACTATGGCGTCGTGCGACTGTGGGACCGGCGCCAAAGGGCCTG CCTACATGCCTTCCCGCTGACCTCGACCCCCCTCAGCAGTCCTGTGTACTGCCTGCGCTT CACCACCAAGCATCTCTACGCTGCGCTGTCTTACAACCTCCACGTCCTGGACTTTCAAAA CCCATGACAGGGCCATCCCAGCCTGTGGGCCAGGGAAGCCAGCTACTCAGGGACCTCTCC TGCCTGGAAGGTACAGTGATACCTAGATCTGTGACCCAGGGGCATAGTTCCCACCACCCC CACCAGGAACCAGTTGGAGAGCAGGGTCCTGCTGCTTCGAGAGAACACAGCTGAACCCAG CCAGGCCTTGCTCCTCTGTTGGCCAGAGCAAGGATGGGGTCTGGAGAGGCCCACCCCTTC TCAGAGCCAGGCCAGCTCAGCTCAAGAGTGAGGCCAGGTGCTCCAGCCTTCCCAGTGGGT CCCTTCCTGCCTCTTCCCTGGAGGGAGGCGGGAGGCTGCCAGTTCCCTATGGCCCCAGCC TCCATCTCAGTCAGACCCCACCCTTGGCCAAGCTCGGGCCGGGGACTCACATTCCTGGGG CACTGGGGCTTGGTCTTGCTTTGACACCAAGAGAGGACAAAGGGAACCCCACAATTCTGA GTGAGTTCTGAACCAGCCCAACCTCAGGCTAGCTGTTGAGACATGCTACAATATTCATTT TCGTAAAAATAAAGCTTAACTGTTCACAAAAAAAAAAAAAAAGGGGGGGCCTTTTTAAAT TTTCCTTGGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCAGGGGCTGGGGTGCTAGACGTCATGTATGAGTCCCCTTCCACACTCCTGTCCTGTGG CTATGACACCTACGTTCGCTACTGGGACCTCCGCACCAGTGTCCGGAAGTGTGTCATGGA GTGGGAGGAGCCCCACGACAGCACCCTGTACTGCCTGCAGACCGATGGCAACCACCTCCT GGCTACCGGCTCCTCCTACTATGGCGTCGTGCGACTGTGGGACCGGCGCCAAAGGGCCTG CCTACATGCCTTCCCGCTGACCTCGACCCCCCTCAGCAGTCCTGTGTACTGCCTGCGCTT CACCACCAAGCATCTCTACGCTGCGCTGTCTTACAACCTCCACGTCCTGGACTTTCAAAA CCCATGACAGGGCCATCCCAGCCTGTGGGCCAGGGAAGCCAGCTACTCAGGGACCTCTCC TGCCTGGAAGGTACAGTGATACCTAGATCTGTGACCCAGGGGCATAGTTCCCACCACCCC CACCAGGAACCAGTTGGAGAGCAGGGTCCTGCTGCTTCGAGAGAACACAGCTGAACCCAG CCAGGCCTTGCTCCTCTGTTGGCCAGAGCAAGGATGGGGTCTGGAGAGGCCCACCCCTTC TCAGAGCCAGGCCAGCTCAGCTCAAGAGTGAGGCCAGGTGCTCCAGCCTTCCCAGTGGGT CCCTTCCTGCCTCTTCCCTGGAGGGAGGCGGGAGGCTGCCAGTTCCCTATGGCCCCAGCC TCCATCTCAGTCAGACCCCACCCTTGGCCAAGCTCGGGCCGGGGACTCACATTCCTGGGG CACTGGGGCTTGGTCTTGCTTTGACACCAAGAGAGGACAAAGGGAACCCCACAATTCTGA GTGAGTTCTGAACCAGCCCAACCTCAGGCTAGCTGTTGAGACATGCTACAATATTCATTT TCGTAAAAATAAAGCTTAACTGTTCACAAAAAAAAAAAAAAAGGGGGGGCCTTTTTAAAT TTTCCTTGGGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 483-634, - strand, RNAz p=0.655187 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 483-634, - strand, RNAz p=0.655187 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-114, gnl|bosTau2|chr26 (13997035-13996921) | |
| 1-114, gnl|canFam2|chr28 (17217446-17217335) | |
| 1-114, gnl|canFam2|chr28 (17217320-17217439) | |
| 1-114, gnl|danRer3|chr13 (29071125-29071244) | |
| 1-114, gnl|dasNov1|scaffold_7927 (47057-47162) | |
| 1-114, gnl|dasNov1|scaffold_7927 (47176-47064) | |
| 1-114, gnl|echTel1|scaffold_319212 (46322-46211) | |
| 1-114, gnl|echTel1|scaffold_319212 (46198-46315) | |
| 1-114, gnl|fr1|chrUn (172872237-172872133) | |
| 1-114, gnl|fr1|chrUn (172872122-172872233) | |
| 1-114, gnl|galGal2|chr6 (21898645-21898526) | |
| 1-114, gnl|hg17|chr10 (103362071-103362190) | |
| 1-114, gnl|Hg17|chr10 (103362188-103362074) | |
| 1-114, gnl|hg17|chr22 (21930727-21930838) | |
| 1-114, gnl|loxAfr1|scaffold_12969 (3738-3858) | |
| 1-114, gnl|loxAfr1|scaffold_138806 (5057-4954) | |
| 1-114, gnl|mm7|chr19 (45476669-45476558) | |
| 1-114, gnl|mm7|chr19 (45476543-45476662) | |
| 1-114, gnl|Mm7|chr19 (45476660-45476546) | |
| 1-114, gnl|monDom2|scaffold_14 (61909270-61909381) | |
| 1-114, gnl|monDom2|scaffold_14 (61909410-61909277) | |
| 1-114, gnl|oryCun1|scaffold_201288 (93155-93266) | |
| 1-114, gnl|oryCun1|scaffold_201288 (93281-93162) | |
| 1-114, gnl|panTro1|chr23_random (6200000-6200111) | |
| 1-114, gnl|panTro1|chr8_random (3572888-3573007) | |
| 1-114, gnl|rheMac2|chr10 (67414037-67414148) | |
| 1-114, gnl|rheMac2|chr9 (101237939-101238058) | |
| 1-114, gnl|rn3|chr1 (251008904-251008793) | |
| 1-114, gnl|rn3|chr1 (251008778-251008897) | |
| 1-114, gnl|xenTro1|scaffold_475 (164039-163932) | |
| 241-444, gnl|bosTau2|chr26 (13996087-13995884) | |
| 241-444, gnl|Hg17|chr10 (103361164-103360957) | |
| 241-444, gnl|Mm7|chr19 (45475835-45475632) | |
| 483-927, gnl|bosTau2|chr26 (13995775-13995358) | |
| 483-927, gnl|Hg17|chr10 (103360844-103360414) | |
| 483-927, gnl|Mm7|chr19 (45475522-45475160) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-114, gnl|bosTau2|chr26 (13997035-13996921) | |
| 1-114, gnl|canFam2|chr28 (17217446-17217335) | |
| 1-114, gnl|canFam2|chr28 (17217320-17217439) | |
| 1-114, gnl|danRer3|chr13 (29071125-29071244) | |
| 1-114, gnl|dasNov1|scaffold_7927 (47057-47162) | |
| 1-114, gnl|dasNov1|scaffold_7927 (47176-47064) | |
| 1-114, gnl|echTel1|scaffold_319212 (46322-46211) | |
| 1-114, gnl|echTel1|scaffold_319212 (46198-46315) | |
| 1-114, gnl|fr1|chrUn (172872237-172872133) | |
| 1-114, gnl|fr1|chrUn (172872122-172872233) | |
| 1-114, gnl|galGal2|chr6 (21898645-21898526) | |
| 1-114, gnl|hg17|chr10 (103362071-103362190) | |
| 1-114, gnl|Hg17|chr10 (103362188-103362074) | |
| 1-114, gnl|hg17|chr22 (21930727-21930838) | |
| 1-114, gnl|loxAfr1|scaffold_12969 (3738-3858) | |
| 1-114, gnl|loxAfr1|scaffold_138806 (5057-4954) | |
| 1-114, gnl|mm7|chr19 (45476669-45476558) | |
| 1-114, gnl|mm7|chr19 (45476543-45476662) | |
| 1-114, gnl|Mm7|chr19 (45476660-45476546) | |
| 1-114, gnl|monDom2|scaffold_14 (61909270-61909381) | |
| 1-114, gnl|monDom2|scaffold_14 (61909410-61909277) | |
| 1-114, gnl|oryCun1|scaffold_201288 (93155-93266) | |
| 1-114, gnl|oryCun1|scaffold_201288 (93281-93162) | |
| 1-114, gnl|panTro1|chr23_random (6200000-6200111) | |
| 1-114, gnl|panTro1|chr8_random (3572888-3573007) | |
| 1-114, gnl|rheMac2|chr10 (67414037-67414148) | |
| 1-114, gnl|rheMac2|chr9 (101237939-101238058) | |
| 1-114, gnl|rn3|chr1 (251008904-251008793) | |
| 1-114, gnl|rn3|chr1 (251008778-251008897) | |
| 1-114, gnl|xenTro1|scaffold_475 (164039-163932) | |
| 241-444, gnl|bosTau2|chr26 (13996087-13995884) | |
| 241-444, gnl|Hg17|chr10 (103361164-103360957) | |
| 241-444, gnl|Mm7|chr19 (45475835-45475632) | |
| 483-927, gnl|bosTau2|chr26 (13995775-13995358) | |
| 483-927, gnl|Hg17|chr10 (103360844-103360414) | |
| 483-927, gnl|Mm7|chr19 (45475522-45475160) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| eye (0.170503) | |
| cag (0.151194) | |
| pla (0.133672) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.170503) | |
| cag (0.151194) | |
| pla (0.133672) | |
| cty (0.10408) | |
| jej (0.0989218) |