Ss1.1-Mixc-0034,a06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGCAGAGGCCATAACTCTTATAGAATCAACTCACAGCCGGAAAAAAGAGTTAGCCCAGG TGCTTCTTCAGAAAGTATTAGTCTACCACAGAGAACAAGAAAGATTAAATAAAGGAAAAC CACTAGCATTTCGAGTAGGCTTGTCTGGGCCTCCTGGTGCTGGAAAATCAACCTTTATAG AATATTTTGGAAAGATGCTTACTGAGAGAGGGCACAAATTATCTGTGCTAGCTGTGGATC CTTCTTCTTGTACCAGTGGTGGATCACTCTTAGGTGACAAAACCCGAATGACTGAGCTAT CAAGAGATATGAATGCATACATCAGGCCATCTCCTACCAGAGGTACTTTAGGAGGTGTGA CAAGGACCACAAATGAAGCTATTCTGTTGTGTGAAGGAGGGGGATATGACATCATACTTA TTGAAACCGTAGGTGTGGGTCAATCAGAGTTTGCTGTTGCTGACATGGTTGACATGTTTG TTTTACTACTGCCACCAGCAGGAGGAGATGAATTGCAGGGTATCAAAAGAGGTATAATTG AGATGGCAGATCTGGTGGCTGTGACCAAATCTGATGGAGACTTGATCGTGCCAGCTCGGA GAATCCAAGCAGAGTACGTGAGTGCGCTGAAGTTACTCCGTGGCCGTTCAGGAGTCTGGA GACCAAAGGTAATTCGTATTTCTGCCCGAAGTGGAGAGGGGATCACAGAAATGTGGGATA AAATGAAAGAATTCCGGGACGTAATGCTTGCCAGCGGGGAACTGACTGCCAAACGACAGA GGCAGCAGAAAGTTTGGATGTGGAACCTCATTCAGGAAAATGTGGTAGAGCATTTCAGGA CCCATCCCACAGTCCGGGAGCAGATTCCCCTTCTGGAAAAGAGGGTTCTCAGTGGGGCCC TGTCTCCAGGACGAGCAGCAGACTTGTTGTTGAAAGCTTTCAAAAGCAGAGACTAATGAA ATGCATCCTGTGCAATAATTTTTTGTATCATTCTATAAAGTATTTTACTATTAAAAAGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGCAGAGGCCATAACTCTTATAGAATCAACTCACAGCCGGAAAAAAGAGTTAGCCCAGG TGCTTCTTCAGAAAGTATTAGTCTACCACAGAGAACAAGAAAGATTAAATAAAGGAAAAC CACTAGCATTTCGAGTAGGCTTGTCTGGGCCTCCTGGTGCTGGAAAATCAACCTTTATAG AATATTTTGGAAAGATGCTTACTGAGAGAGGGCACAAATTATCTGTGCTAGCTGTGGATC CTTCTTCTTGTACCAGTGGTGGATCACTCTTAGGTGACAAAACCCGAATGACTGAGCTAT CAAGAGATATGAATGCATACATCAGGCCATCTCCTACCAGAGGTACTTTAGGAGGTGTGA CAAGGACCACAAATGAAGCTATTCTGTTGTGTGAAGGAGGGGGATATGACATCATACTTA TTGAAACCGTAGGTGTGGGTCAATCAGAGTTTGCTGTTGCTGACATGGTTGACATGTTTG TTTTACTACTGCCACCAGCAGGAGGAGATGAATTGCAGGGTATCAAAAGAGGTATAATTG AGATGGCAGATCTGGTGGCTGTGACCAAATCTGATGGAGACTTGATCGTGCCAGCTCGGA GAATCCAAGCAGAGTACGTGAGTGCGCTGAAGTTACTCCGTGGCCGTTCAGGAGTCTGGA GACCAAAGGTAATTCGTATTTCTGCCCGAAGTGGAGAGGGGATCACAGAAATGTGGGATA AAATGAAAGAATTCCGGGACGTAATGCTTGCCAGCGGGGAACTGACTGCCAAACGACAGA GGCAGCAGAAAGTTTGGATGTGGAACCTCATTCAGGAAAATGTGGTAGAGCATTTCAGGA CCCATCCCACAGTCCGGGAGCAGATTCCCCTTCTGGAAAAGAGGGTTCTCAGTGGGGCCC TGTCTCCAGGACGAGCAGCAGACTTGTTGTTGAAAGCTTTCAAAAGCAGAGACTAATGAA ATGCATCCTGTGCAATAATTTTTTGTATCATTCTATAAAGTATTTTACTATTAAAAAGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 826-945, - strand, RNAz p=0.70174 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 826-945, - strand, RNAz p=0.70174 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 3-146, gnl|bosTau2|chr17 (7995556-7995413) | |
| 3-146, gnl|canFam2|chr15 (47243352-47243560) | |
| 3-146, gnl|danRer3|chr1 (36969924-36970126) | |
| 3-146, gnl|dasNov1|scaffold_16495 (4946-5129) | |
| 3-146, gnl|echTel1|scaffold_292778 (4967-4756) | |
| 3-146, gnl|fr1|chrUn (26212982-26213192) | |
| 3-146, gnl|galGal2|chr4 (31661099-31661307) | |
| 3-146, gnl|hg17|chr4 (146918140-146918351) | |
| 3-146, gnl|Hg17|chr4 (146918200-146918343) | |
| 3-146, gnl|mm7|chr8 (77821597-77821386) | |
| 3-146, gnl|Mm7|chr8 (77821535-77821392) | |
| 3-146, gnl|monDom2|scaffold_9 (13919899-13920110) | |
| 3-146, gnl|oryCun1|scaffold_202264 (9238-9450) | |
| 3-146, gnl|panTro1|chr3 (164171403-164171614) | |
| 3-146, gnl|rheMac2|chr5 (137814548-137814760) | |
| 3-146, gnl|rn3|chr19 (30474518-30474729) | |
| 3-146, gnl|tetNig1|chr18 (6933597-6933795) | |
| 3-146, gnl|xenTro1|scaffold_360 (973088-972886) | |
| 261-440, gnl|bosTau2|chr17 (7989203-7989024) | |
| 261-440, gnl|canFam2|chr15 (47248513-47248713) | |
| 261-440, gnl|danRer3|chr1 (36973795-36973987) | |
| 261-440, gnl|dasNov1|scaffold_16495 (10901-11099) | |
| 261-440, gnl|fr1|chrUn (26213841-26214019) | |
| 261-440, gnl|galGal2|chr4 (31663620-31663803) | |
| 261-440, gnl|hg17|chr4 (146924738-146924938) | |
| 261-440, gnl|Hg17|chr4 (146924742-146924921) | |
| 261-440, gnl|loxAfr1|scaffold_153162 (377-177) | |
| 261-440, gnl|mm7|chr8 (77814504-77814304) | |
| 261-440, gnl|Mm7|chr8 (77814498-77814319) | |
| 261-440, gnl|monDom2|scaffold_9 (13939145-13939348) | |
| 261-440, gnl|oryCun1|scaffold_206219 (4411-4611) | |
| 261-440, gnl|panTro1|chr3 (164177994-164178194) | |
| 261-440, gnl|rheMac2|chr5 (137821238-137821438) | |
| 261-440, gnl|rn3|chr19 (30484124-30484322) | |
| 261-440, gnl|tetNig1|chr18 (6934240-6934421) | |
| 261-440, gnl|xenTro1|scaffold_360 (967804-967600) | |
| 667-1016, gnl|bosTau2|chr17 (7983394-7983044) | |
| 667-1016, gnl|Hg17|chr4 (146933902-146934250) | |
| 667-1016, gnl|Mm7|chr8 (77808440-77808095) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-146, gnl|bosTau2|chr17 (7995556-7995413) | |
| 3-146, gnl|canFam2|chr15 (47243352-47243560) | |
| 3-146, gnl|danRer3|chr1 (36969924-36970126) | |
| 3-146, gnl|dasNov1|scaffold_16495 (4946-5129) | |
| 3-146, gnl|echTel1|scaffold_292778 (4967-4756) | |
| 3-146, gnl|fr1|chrUn (26212982-26213192) | |
| 3-146, gnl|galGal2|chr4 (31661099-31661307) | |
| 3-146, gnl|hg17|chr4 (146918140-146918351) | |
| 3-146, gnl|Hg17|chr4 (146918200-146918343) | |
| 3-146, gnl|mm7|chr8 (77821597-77821386) | |
| 3-146, gnl|Mm7|chr8 (77821535-77821392) | |
| 3-146, gnl|monDom2|scaffold_9 (13919899-13920110) | |
| 3-146, gnl|oryCun1|scaffold_202264 (9238-9450) | |
| 3-146, gnl|panTro1|chr3 (164171403-164171614) | |
| 3-146, gnl|rheMac2|chr5 (137814548-137814760) | |
| 3-146, gnl|rn3|chr19 (30474518-30474729) | |
| 3-146, gnl|tetNig1|chr18 (6933597-6933795) | |
| 3-146, gnl|xenTro1|scaffold_360 (973088-972886) | |
| 261-440, gnl|bosTau2|chr17 (7989203-7989024) | |
| 261-440, gnl|canFam2|chr15 (47248513-47248713) | |
| 261-440, gnl|danRer3|chr1 (36973795-36973987) | |
| 261-440, gnl|dasNov1|scaffold_16495 (10901-11099) | |
| 261-440, gnl|fr1|chrUn (26213841-26214019) | |
| 261-440, gnl|galGal2|chr4 (31663620-31663803) | |
| 261-440, gnl|hg17|chr4 (146924738-146924938) | |
| 261-440, gnl|Hg17|chr4 (146924742-146924921) | |
| 261-440, gnl|loxAfr1|scaffold_153162 (377-177) | |
| 261-440, gnl|mm7|chr8 (77814504-77814304) | |
| 261-440, gnl|Mm7|chr8 (77814498-77814319) | |
| 261-440, gnl|monDom2|scaffold_9 (13939145-13939348) | |
| 261-440, gnl|oryCun1|scaffold_206219 (4411-4611) | |
| 261-440, gnl|panTro1|chr3 (164177994-164178194) | |
| 261-440, gnl|rheMac2|chr5 (137821238-137821438) | |
| 261-440, gnl|rn3|chr19 (30484124-30484322) | |
| 261-440, gnl|tetNig1|chr18 (6934240-6934421) | |
| 261-440, gnl|xenTro1|scaffold_360 (967804-967600) | |
| 667-1016, gnl|bosTau2|chr17 (7983394-7983044) | |
| 667-1016, gnl|Hg17|chr4 (146933902-146934250) | |
| 667-1016, gnl|Mm7|chr8 (77808440-77808095) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fhi (0.169578) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| kid (0.129735) | |
| tra (0.123092) | |
| jca (0.11396) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| kid (0.129735) | |
| tra (0.123092) | |
| jca (0.11396) |