Non-Coding RNA Search

Ss1.1-Mixc-0034,e08.3

Sequence:


               
               TCCAATGTGAGTTCAACCAGAAGCCTTTTAAAAGGCATGTTACCAAATGGCCACAAGCTA
AGACCCCATCGGATCAAAGAGATGAAAGTCTCTGCAGGCAGATGGCACCTGATATGGTCT
CTCTTCAAGACTAAGCATTCTCAAGATGGCTCAGGAAGGAATGGGAGGGGACCATCAGGC
TAAGGTCTCTCTTTCACTCATATTCCTTGAAGCCTCCTGGAACTCTTAATAAAAGGAAGC
CAGAATATTGTCACTTGTTGGCTGTTGAGTTGCCAGCAGCGTTTGTGTCACTTGTGTACC
ACACTTCCTTCTCTGCCTGATTCCATTTTTCTTAAAAAATATTGTGCCCCTGTGAGCCTA
TTTCCTTGAACACAAATCCATGAAAGTTCGGCTTCCTATTTTGGTATATGTTGCATGGCC
TGGCAACCAGGGAACAACAGCTGTTGGTGTAATTTCTATGTTAAGTGAAAAATTAGATTT
TATAGAGACAGTTTTTTTTTTCTTTTGGATCTACAGTAATTTTTTTAAACTGTCATTGTG
AAACTACCCTTAGAAAATGAAGGGTTTTTATAGATTTGTTGCCAAAGGGAAGTTTGCTCT
GTAATAGGAACAGTTATGTGGTGATTCTGGAACTTTACCTTAGAGCTTCATTCATGTAAA
CATGGAAAACACCCTCCAAGTTTGATCTCCCAAAGTTTCATAAAGCCTCTTAGCTCATGA
TTTTCATCAAGTCTTTACCCACATGATCAGTTACCTCCATAGCCATTTGGTGTCATGCTA
GGGGGAAGGGGTTAGTTTGGGGATTTGATTTTTTTTTAACTTGCTGTGAGAAATAGGATA
GGTGACAAAACCTTTCTTATTTTCTTAAGACAATTCAGTGCTTGAGCATCTCTGTCAGAA
ATGGAATGATGTACTGTTAGCCAATTAGAATTATTTTATGTATTGTTAATTGTGTTTTGC
TGATTTTTATATGAAAATATAATTATTCATTCTTGATCTCTGGAAGTAATCATTATTATG
AGGATCATTTTACTTTGGAAACACTTTCATAATAAAGATAAGTATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAATGTGAGTTCAACCAGAAGCCTTTTAAAAGGCATGTTACCAAATGGCCACAAGCTA
AGACCCCATCGGATCAAAGAGATGAAAGTCTCTGCAGGCAGATGGCACCTGATATGGTCT
CTCTTCAAGACTAAGCATTCTCAAGATGGCTCAGGAAGGAATGGGAGGGGACCATCAGGC
TAAGGTCTCTCTTTCACTCATATTCCTTGAAGCCTCCTGGAACTCTTAATAAAAGGAAGC
CAGAATATTGTCACTTGTTGGCTGTTGAGTTGCCAGCAGCGTTTGTGTCACTTGTGTACC
ACACTTCCTTCTCTGCCTGATTCCATTTTTCTTAAAAAATATTGTGCCCCTGTGAGCCTA
TTTCCTTGAACACAAATCCATGAAAGTTCGGCTTCCTATTTTGGTATATGTTGCATGGCC
TGGCAACCAGGGAACAACAGCTGTTGGTGTAATTTCTATGTTAAGTGAAAAATTAGATTT
TATAGAGACAGTTTTTTTTTTCTTTTGGATCTACAGTAATTTTTTTAAACTGTCATTGTG
AAACTACCCTTAGAAAATGAAGGGTTTTTATAGATTTGTTGCCAAAGGGAAGTTTGCTCT
GTAATAGGAACAGTTATGTGGTGATTCTGGAACTTTACCTTAGAGCTTCATTCATGTAAA
CATGGAAAACACCCTCCAAGTTTGATCTCCCAAAGTTTCATAAAGCCTCTTAGCTCATGA
TTTTCATCAAGTCTTTACCCACATGATCAGTTACCTCCATAGCCATTTGGTGTCATGCTA
GGGGGAAGGGGTTAGTTTGGGGATTTGATTTTTTTTTAACTTGCTGTGAGAAATAGGATA
GGTGACAAAACCTTTCTTATTTTCTTAAGACAATTCAGTGCTTGAGCATCTCTGTCAGAA
ATGGAATGATGTACTGTTAGCCAATTAGAATTATTTTATGTATTGTTAATTGTGTTTTGC
TGATTTTTATATGAAAATATAATTATTCATTCTTGATCTCTGGAAGTAATCATTATTATG
AGGATCATTTTACTTTGGAAACACTTTCATAATAAAGATAAGTATTAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               358-476, - strand, RNAz p=0.97881
               

               
               627-729, - strand, RNAz p=0.514592

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               358-476, - strand, RNAz p=0.97881
               

               
               627-729, - strand, RNAz p=0.514592

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1068, gnl|bosTau2|chr2 (21848546-21849629)
               

               
               1-1068, gnl|Hg17|chr2 (169456086-169457144)
               

               
               1-1068, gnl|Mm7|chr2 (69043514-69044826)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1068, gnl|bosTau2|chr2 (21848546-21849629)
               

               
               1-1068, gnl|Hg17|chr2 (169456086-169457144)
               

               
               1-1068, gnl|Mm7|chr2 (69043514-69044826)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               pla (0.267344)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               jej (0.0989218)

	358-476, - strand, RNAz p=0.97881
	627-729, - strand, RNAz p=0.514592

	1-1068, gnl\|bosTau2\|chr2 (21848546-21849629)
	1-1068, gnl\|Hg17\|chr2 (169456086-169457144)
	1-1068, gnl\|Mm7\|chr2 (69043514-69044826)

	pla (0.267344)
	cbe (0.239234)
	tes (0.207814)
	fcc (0.197785)
	sin (0.174948)
	rec (0.17307)
	fhi (0.169578)
	kid (0.129735)
	ret (0.128733)
	jej (0.0989218)