Non-Coding RNA Search

Ss1.1-Mixc-0034,j05.3

Sequence:


               
               CGCACCCCCTTGGCACCCGCAGTGCCTCTGGATTCCAGCGGCCGGGAGCTCCATGCCAAG
CAGCCTGAGCATGCGAGTCACACTGGCTGTGACAGCCTGGATGGTCTCTTTAGTCTCCAG
CTCTTCCTCTCCAGAAAATTCTCTACCAGATATCAAAAATGAGGATTTCATCAAAGACTG
TGTTCGAATTCACAACAAGCTCCGATCAGAAGTGAACCCAACGGCTAGTGATATGCTGTA
CATGACTTGGGACCCAGAACTAGCCAAAATTGCAAGGTCATGGGCAAGCAGTTGCCAGTT
TGCACATAACAAACAGCTGAAGTCACCCTACAGGCTACACCCGAATTTCACTTCACTGGG
AGAAAACCTCTGGACTGGGTCTCTATCCATCTTTTCCGTGACTTCAGCCATCACAGACTG
GTACAACGAAGTTAAATACTATGACTTCAAGACTCAGAGGTGTGCCAGGGTTTGTGGCCA
TTACACTCAGGTTGTGTGGGCAGAGAGTTATAAGGTTGGCTGTGCAGTACAGTTTTGTCC
CCGAGTGGCTGGCTTTGACACTCTTCGCAATGGAGCACATTTTATATGCAACTATGGACC
AGCAGGAAATTTCACACGTATGTATATAAATCTTAAGTTGTTCAAGATTTATGTAAGCAA
TGTTTCTGCATCACGAAGAACAATATTTAAGAGGCTAAAACGAGACAAAGTCACACGTTA
CTATTCTGTTGTGTTTCCAGACTGGCTGATACTTCCACGTAATAGATACCTATCTCTTTT
TCTCATTGTTAGTCCACCAATCCTATTACTGAGTGTTATAATTACCATTTTGGTTAAATA
CCCTCATTTAGTTCTCAAATAATACAATCAAGGGAAAAAAAACCCTCATGTACAGCTTTT
TTTTTAATAAGTGGGTGTATTTCTATTTTAAAACTTTGAGAAAACATATATTGTTTACAC
TGTTGCAGCAAACCCTTACTCAAAAGAAACTTCAATTTAATAACACTGTACGGTAAACTC
ATCTTTATTACTTCCCACACTGTATGATAAACTCGTCTTTGTTATTTCCCACTCTGTATA
AAAAAGCATTGTTTTTAGGCTGCCACTGCTGTGATTTCAAACCCTGGTGTGCTTCAGCTT
CTAAATATGTAAAGTCAATCTTGAGATAGGTAGGTGAGTATAAGTAACTGCACTGGACCT
TATTAACAAAACATTTCTATAATCTGTTGCATGCTGCTTCAACTCTAAATATCTGGTTTT
CCCTTCTCTCCTGCAATTTTATGACTTTCTGGTTTACAACTTCCTCAGATTCAGAACGGA
ATAGTAATTAAGGAATAAAATTTAAGAAGCCTTGCTTTTTTGGATTATGAGATTATAGAC
AGGGGAGTTTCAACTGTGGTACAGTGAGTTAACCATCTGACTACAGCAGTTTTAGGTTGC
TGAAATTCCTCTGCCCAGCAAGATCCAGTGTTGCTGCAGCTTGGATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCACCCCCTTGGCACCCGCAGTGCCTCTGGATTCCAGCGGCCGGGAGCTCCATGCCAAG
CAGCCTGAGCATGCGAGTCACACTGGCTGTGACAGCCTGGATGGTCTCTTTAGTCTCCAG
CTCTTCCTCTCCAGAAAATTCTCTACCAGATATCAAAAATGAGGATTTCATCAAAGACTG
TGTTCGAATTCACAACAAGCTCCGATCAGAAGTGAACCCAACGGCTAGTGATATGCTGTA
CATGACTTGGGACCCAGAACTAGCCAAAATTGCAAGGTCATGGGCAAGCAGTTGCCAGTT
TGCACATAACAAACAGCTGAAGTCACCCTACAGGCTACACCCGAATTTCACTTCACTGGG
AGAAAACCTCTGGACTGGGTCTCTATCCATCTTTTCCGTGACTTCAGCCATCACAGACTG
GTACAACGAAGTTAAATACTATGACTTCAAGACTCAGAGGTGTGCCAGGGTTTGTGGCCA
TTACACTCAGGTTGTGTGGGCAGAGAGTTATAAGGTTGGCTGTGCAGTACAGTTTTGTCC
CCGAGTGGCTGGCTTTGACACTCTTCGCAATGGAGCACATTTTATATGCAACTATGGACC
AGCAGGAAATTTCACACGTATGTATATAAATCTTAAGTTGTTCAAGATTTATGTAAGCAA
TGTTTCTGCATCACGAAGAACAATATTTAAGAGGCTAAAACGAGACAAAGTCACACGTTA
CTATTCTGTTGTGTTTCCAGACTGGCTGATACTTCCACGTAATAGATACCTATCTCTTTT
TCTCATTGTTAGTCCACCAATCCTATTACTGAGTGTTATAATTACCATTTTGGTTAAATA
CCCTCATTTAGTTCTCAAATAATACAATCAAGGGAAAAAAAACCCTCATGTACAGCTTTT
TTTTTAATAAGTGGGTGTATTTCTATTTTAAAACTTTGAGAAAACATATATTGTTTACAC
TGTTGCAGCAAACCCTTACTCAAAAGAAACTTCAATTTAATAACACTGTACGGTAAACTC
ATCTTTATTACTTCCCACACTGTATGATAAACTCGTCTTTGTTATTTCCCACTCTGTATA
AAAAAGCATTGTTTTTAGGCTGCCACTGCTGTGATTTCAAACCCTGGTGTGCTTCAGCTT
CTAAATATGTAAAGTCAATCTTGAGATAGGTAGGTGAGTATAAGTAACTGCACTGGACCT
TATTAACAAAACATTTCTATAATCTGTTGCATGCTGCTTCAACTCTAAATATCTGGTTTT
CCCTTCTCTCCTGCAATTTTATGACTTTCTGGTTTACAACTTCCTCAGATTCAGAACGGA
ATAGTAATTAAGGAATAAAATTTAAGAAGCCTTGCTTTTTTGGATTATGAGATTATAGAC
AGGGGAGTTTCAACTGTGGTACAGTGAGTTAACCATCTGACTACAGCAGTTTTAGGTTGC
TGAAATTCCTCTGCCCAGCAAGATCCAGTGTTGCTGCAGCTTGGATTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61817949|ref|XP_613939.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61817949|ref|XP_613939.1|

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               244-492, gnl|bosTau2|chr5 (1742538-1742786)
               

               
               244-492, gnl|Hg17|chr12 (74161880-74162128)
               

               
               244-492, gnl|Mm7|chr10 (111533957-111533715)
               


               
               614-928, gnl|bosTau2|chr19 (9095914-9095587)
               

               
               614-928, gnl|Hg17|chr12 (74178764-74179142)
               


               
               1117-1375, gnl|bosTau2|chr19 (9095479-9095222)
               

               
               1117-1375, gnl|Hg17|chr12 (74179256-74179501)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               244-492, gnl|bosTau2|chr5 (1742538-1742786)
               

               
               244-492, gnl|Hg17|chr12 (74161880-74162128)
               

               
               244-492, gnl|Mm7|chr10 (111533957-111533715)
               


               
               614-928, gnl|bosTau2|chr19 (9095914-9095587)
               

               
               614-928, gnl|Hg17|chr12 (74178764-74179142)
               


               
               1117-1375, gnl|bosTau2|chr19 (9095479-9095222)
               

               
               1117-1375, gnl|Hg17|chr12 (74179256-74179501)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

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               lin (0.436808)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               gul (0.355177)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               sug (0.254582)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               gul (0.355177)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               sug (0.254582)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	244-492, gnl\|bosTau2\|chr5 (1742538-1742786)
	244-492, gnl\|Hg17\|chr12 (74161880-74162128)
	244-492, gnl\|Mm7\|chr10 (111533957-111533715)

	614-928, gnl\|bosTau2\|chr19 (9095914-9095587)
	614-928, gnl\|Hg17\|chr12 (74178764-74179142)

	1117-1375, gnl\|bosTau2\|chr19 (9095479-9095222)
	1117-1375, gnl\|Hg17\|chr12 (74179256-74179501)

	lin (0.436808)
	aor (0.390549)
	ret (0.3862)
	gul (0.355177)
	fco (0.314416)
	sme (0.305437)
	sug (0.254582)
	cty (0.20816)
	tes (0.207814)
	fbs (0.175346)
	duo (0.172801)
	eye (0.170503)
	mga (0.160205)
	tbr (0.154178)
	fat (0.147427)
	spl (0.143184)
	ese (0.126502)
	tra (0.123092)
	cly (0.120642)
	clu (0.119646)
	nbm (0.0993246)
	ldo (0.0970026)