Ss1.1-Mixc-0034,l07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGAGCGCGCTGTGGGGCCTGTGTTCTTTTTTAAAAGAACGCCCGCCCCTCCCAAATTTA AACTTAGTTGCTATGAATTAACACAAAAACTTGTTGGAAGGAGAAACTGAGAGTGCTAGC TGCAGCTCTTTTTTGCAGATGGATTTTAAAATTGAACACACTTGGGATAGTTTTCCAGTG AAGCATGAGCCAGTGTTTGTCAGGCTGAATCCAGGTGACAGAGGAGTGATGATGGAAGTT AGTGCTCCATTTTTCAATGATCCTCCAGCCCCGCTAGGAGAACCGGGAAAACCTTTCAAT GAACTGTGGGATTATGAAGTTGTGGAAGCATTTTTCTTGAATGACATGACTGAACAGTAT TTAGAAGTTGAACTTTGTCCCCATGGACAGCATTTGGTGCTTTTACTCTCTGGAAGAAGA AATGTGTGGAAACAAGAACTTGATCTATCATTCAAAGTGTACAGAGGAGAGACAAAATGG GAAGGCAGAGCTTATCTTCCTTGGAGTTATTTTCCACCAAATGTGACAAAATTCAATTCA TTTGCAATTCATGGATCAAAAGATAAAAGAAGCTATGAGGCTCTTTACCCAGTACCTCAA CATGAAATACAGCAAGGACAAAAACCTGATTTCCATCGTCTGGAATACTTCAAGCCTTTC AGTTTTAATGTACTGCTTGGAGAAGAGTGGAAACAACCAGAATCGGACCTGTGGCTAACA GAGAAACCTGATGTATAGCAGTGTAGTAGATGACCATATCAATCCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGAGCGCGCTGTGGGGCCTGTGTTCTTTTTTAAAAGAACGCCCGCCCCTCCCAAATTTA AACTTAGTTGCTATGAATTAACACAAAAACTTGTTGGAAGGAGAAACTGAGAGTGCTAGC TGCAGCTCTTTTTTGCAGATGGATTTTAAAATTGAACACACTTGGGATAGTTTTCCAGTG AAGCATGAGCCAGTGTTTGTCAGGCTGAATCCAGGTGACAGAGGAGTGATGATGGAAGTT AGTGCTCCATTTTTCAATGATCCTCCAGCCCCGCTAGGAGAACCGGGAAAACCTTTCAAT GAACTGTGGGATTATGAAGTTGTGGAAGCATTTTTCTTGAATGACATGACTGAACAGTAT TTAGAAGTTGAACTTTGTCCCCATGGACAGCATTTGGTGCTTTTACTCTCTGGAAGAAGA AATGTGTGGAAACAAGAACTTGATCTATCATTCAAAGTGTACAGAGGAGAGACAAAATGG GAAGGCAGAGCTTATCTTCCTTGGAGTTATTTTCCACCAAATGTGACAAAATTCAATTCA TTTGCAATTCATGGATCAAAAGATAAAAGAAGCTATGAGGCTCTTTACCCAGTACCTCAA CATGAAATACAGCAAGGACAAAAACCTGATTTCCATCGTCTGGAATACTTCAAGCCTTTC AGTTTTAATGTACTGCTTGGAGAAGAGTGGAAACAACCAGAATCGGACCTGTGGCTAACA GAGAAACCTGATGTATAGCAGTGTAGTAGATGACCATATCAATCCTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 633-729, + strand, RNAz p=0.568172 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 633-729, + strand, RNAz p=0.568172 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 137-319, gnl|bosTau2|chr29 (34713543-34713361) | |
| 137-319, gnl|canFam2|chr19 (14992271-14992051) | |
| 137-319, gnl|danRer3|chr25 (23634562-23634748) | |
| 137-319, gnl|dasNov1|scaffold_871 (109775-109551) | |
| 137-319, gnl|echTel1|scaffold_117647 (379-158) | |
| 137-319, gnl|fr1|chrUn (251165751-251165958) | |
| 137-319, gnl|galGal2|chr4 (34500362-34500140) | |
| 137-319, gnl|hg17|chr4 (130381348-130381568) | |
| 137-319, gnl|Hg17|chr4 (130381369-130381551) | |
| 137-319, gnl|loxAfr1|scaffold_27534 (7419-7639) | |
| 137-319, gnl|mm7|chr3 (41598515-41598722) | |
| 137-319, gnl|Mm7|chr3 (41598523-41598705) | |
| 137-319, gnl|monDom2|scaffold_26 (35717954-35718173) | |
| 137-319, gnl|oryCun1|scaffold_98031 (14559-14782) | |
| 137-319, gnl|panTro1|chr3 (147314322-147314542) | |
| 137-319, gnl|rheMac2|chr5 (121421533-121421754) | |
| 137-319, gnl|rn3|chr2 (128689449-128689656) | |
| 137-319, gnl|tetNig1|chrUn_random (8435137-8435344) | |
| 433-632, gnl|bosTau2|chr29 (34705249-34705050) | |
| 433-632, gnl|canFam2|chr19 (14978470-14978248) | |
| 433-632, gnl|danRer3|chr25 (23637059-23637272) | |
| 433-632, gnl|dasNov1|scaffold_871 (99917-99695) | |
| 433-632, gnl|echTel1|scaffold_305310 (5231-5455) | |
| 433-632, gnl|fr1|chrUn (251167322-251167541) | |
| 433-632, gnl|galGal2|chr4 (34499218-34499002) | |
| 433-632, gnl|hg17|chr4 (130388223-130388445) | |
| 433-632, gnl|Hg17|chr4 (130388233-130388432) | |
| 433-632, gnl|loxAfr1|scaffold_204252 (72-293) | |
| 433-632, gnl|mm7|chr3 (41605746-41605960) | |
| 433-632, gnl|Mm7|chr3 (41605748-41605947) | |
| 433-632, gnl|monDom2|scaffold_26 (35726594-35726813) | |
| 433-632, gnl|oryCun1|scaffold_166551 (3975-3753) | |
| 433-632, gnl|panTro1|chr3_random (12296667-12296889) | |
| 433-632, gnl|rheMac2|chr5 (121430543-121430765) | |
| 433-632, gnl|rn3|chr2 (128703186-128703400) | |
| 433-632, gnl|tetNig1|chrUn_random (8437088-8437296) | |
| 433-632, gnl|xenTro1|scaffold_181 (1860412-1860195) | |
| 633-768, gnl|bosTau2|chr29 (34702531-34702396) | |
| 633-768, gnl|canFam2|chr19 (14977310-14977169) | |
| 633-768, gnl|danRer3|chr25 (23637306-23637450) | |
| 633-768, gnl|dasNov1|scaffold_871 (97785-97644) | |
| 633-768, gnl|echTel1|scaffold_305310 (7754-7895) | |
| 633-768, gnl|fr1|chrUn (251167796-251167889) | |
| 633-768, gnl|galGal2|chr4 (34497691-34497570) | |
| 633-768, gnl|hg17|chr4 (130390401-130390542) | |
| 633-768, gnl|Hg17|chr4 (130390446-130390579) | |
| 633-768, gnl|loxAfr1|scaffold_70018 (34006-34146) | |
| 633-768, gnl|mm7|chr3 (41608033-41608153) | |
| 633-768, gnl|monDom2|scaffold_26 (35728875-35729016) | |
| 633-768, gnl|oryCun1|scaffold_166551 (1604-1463) | |
| 633-768, gnl|panTro1|chr3_random (12298844-12298985) | |
| 633-768, gnl|rheMac2|chr5 (121432822-121432963) | |
| 633-768, gnl|rn3|chr2 (128712857-128712993) | |
| 633-768, gnl|tetNig1|chrUn_random (8437365-8437463) | |
| 633-768, gnl|xenTro1|scaffold_181 (1854578-1854455) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 137-319, gnl|bosTau2|chr29 (34713543-34713361) | |
| 137-319, gnl|canFam2|chr19 (14992271-14992051) | |
| 137-319, gnl|danRer3|chr25 (23634562-23634748) | |
| 137-319, gnl|dasNov1|scaffold_871 (109775-109551) | |
| 137-319, gnl|echTel1|scaffold_117647 (379-158) | |
| 137-319, gnl|fr1|chrUn (251165751-251165958) | |
| 137-319, gnl|galGal2|chr4 (34500362-34500140) | |
| 137-319, gnl|hg17|chr4 (130381348-130381568) | |
| 137-319, gnl|Hg17|chr4 (130381369-130381551) | |
| 137-319, gnl|loxAfr1|scaffold_27534 (7419-7639) | |
| 137-319, gnl|mm7|chr3 (41598515-41598722) | |
| 137-319, gnl|Mm7|chr3 (41598523-41598705) | |
| 137-319, gnl|monDom2|scaffold_26 (35717954-35718173) | |
| 137-319, gnl|oryCun1|scaffold_98031 (14559-14782) | |
| 137-319, gnl|panTro1|chr3 (147314322-147314542) | |
| 137-319, gnl|rheMac2|chr5 (121421533-121421754) | |
| 137-319, gnl|rn3|chr2 (128689449-128689656) | |
| 137-319, gnl|tetNig1|chrUn_random (8435137-8435344) | |
| 433-632, gnl|bosTau2|chr29 (34705249-34705050) | |
| 433-632, gnl|canFam2|chr19 (14978470-14978248) | |
| 433-632, gnl|danRer3|chr25 (23637059-23637272) | |
| 433-632, gnl|dasNov1|scaffold_871 (99917-99695) | |
| 433-632, gnl|echTel1|scaffold_305310 (5231-5455) | |
| 433-632, gnl|fr1|chrUn (251167322-251167541) | |
| 433-632, gnl|galGal2|chr4 (34499218-34499002) | |
| 433-632, gnl|hg17|chr4 (130388223-130388445) | |
| 433-632, gnl|Hg17|chr4 (130388233-130388432) | |
| 433-632, gnl|loxAfr1|scaffold_204252 (72-293) | |
| 433-632, gnl|mm7|chr3 (41605746-41605960) | |
| 433-632, gnl|Mm7|chr3 (41605748-41605947) | |
| 433-632, gnl|monDom2|scaffold_26 (35726594-35726813) | |
| 433-632, gnl|oryCun1|scaffold_166551 (3975-3753) | |
| 433-632, gnl|panTro1|chr3_random (12296667-12296889) | |
| 433-632, gnl|rheMac2|chr5 (121430543-121430765) | |
| 433-632, gnl|rn3|chr2 (128703186-128703400) | |
| 433-632, gnl|tetNig1|chrUn_random (8437088-8437296) | |
| 433-632, gnl|xenTro1|scaffold_181 (1860412-1860195) | |
| 633-768, gnl|bosTau2|chr29 (34702531-34702396) | |
| 633-768, gnl|canFam2|chr19 (14977310-14977169) | |
| 633-768, gnl|danRer3|chr25 (23637306-23637450) | |
| 633-768, gnl|dasNov1|scaffold_871 (97785-97644) | |
| 633-768, gnl|echTel1|scaffold_305310 (7754-7895) | |
| 633-768, gnl|fr1|chrUn (251167796-251167889) | |
| 633-768, gnl|galGal2|chr4 (34497691-34497570) | |
| 633-768, gnl|hg17|chr4 (130390401-130390542) | |
| 633-768, gnl|Hg17|chr4 (130390446-130390579) | |
| 633-768, gnl|loxAfr1|scaffold_70018 (34006-34146) | |
| 633-768, gnl|mm7|chr3 (41608033-41608153) | |
| 633-768, gnl|monDom2|scaffold_26 (35728875-35729016) | |
| 633-768, gnl|oryCun1|scaffold_166551 (1604-1463) | |
| 633-768, gnl|panTro1|chr3_random (12298844-12298985) | |
| 633-768, gnl|rheMac2|chr5 (121432822-121432963) | |
| 633-768, gnl|rn3|chr2 (128712857-128712993) | |
| 633-768, gnl|tetNig1|chrUn_random (8437365-8437463) | |
| 633-768, gnl|xenTro1|scaffold_181 (1854578-1854455) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| tbr (0.154178) | |
| bfe (0.149858) | |
| ste (0.135208) | |
| ova (0.129132) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.154178) | |
| bfe (0.149858) | |
| ste (0.135208) | |
| ova (0.129132) | |
| eje (0.0988338) |