Ss1.1-Mixc-0034,l17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAATTAAGTAAAGCTAAATATTCCAGAAATATTGTTAAGAAGTTTCTCATGTATGGGAA TAAAGCACAGATTGCAGAGATAATGAGAAGTTTTAAGGGCCATGTAAGGAAGATGCTGCG ACACGCAGAAGCCTCAGCCATCGTGGAGTACGCCTACAATGACAAGGCCATCTTGGAGCA AAGGAACATGCTGACGGAAGAGCTCTATGGGAACACATTTCAGCTTTACAAGTCAGCAGA TTGCCCAACTCTGGACAAAGTATTAGAGGTACAGCCAGAAAAACTAGAGCTTATCATGGA TGAAATGAAACAGATTTTAACTCCAATGGCCCAAAAAGAAGCTGTGATTAAGCACTCACT GGTACATAAAGTATTCCTGGACTTTTTTACTCATGCACCCCCAAAACTGAGATCAGAAAT GATTGAAGCTATCCGAGAAGCAGTGATATACCTGGCACACACACACGATGGTGCCAGAGT GGCCATGCACTGCCTGTGGCATGGCACACCCAAGGACAGGAAAGTGATTGTGAAAACAAT GAAGACTTATGTTGAAAAGGTAGCTAATGGCCAATACTCCCACTTGGTTTTACTGGCGGC ATTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCAGAAATTATTAA TTCCTTGCCTAACATAGTAAATGACAAATATGGAAGGAAGGTCCTGTTGTATTTACTAAG CCCCAGAGATCCTGCACACACTGTCCGAGAGATCATTGAAGTTCTGCAGAAAGGAGATGG TAATGCACACAGTAAGAAAGATACAGAGATCCGCCGACGAGAGCTCTTAGAATCCATTTC TCCAGCTTTGTTAAGCTACCTGCAAGGACATGCCCAAGAGGTGATGCTTGATAAGTCCGC ATGTGTGCTGGTGTCTGACATCCTGGGCGCCGCCATAGGGGATGTGCAGCCCGCCATGAA TGCCATCGCCAGCTTGGCAGCAGCAGAACTGCATCCCGGTGGCAAGGATGGAGAGCTTCA CATTGCAGAACATCCTGCAGGACATCTAGTTCTGAAGTGGTTAATAGAGCAAGATAAAAA GATGAAAGAAAGTGGAAGAGAAGGTTGTTTTGCAAAAACACTTGTAGAGCATGTTGGTAT GAAGAACCTGAAGTCCTGGGCCAGTGTCAATCGGGGAGCCATTATTCTTTCTAGCCTTCT CCAGAGTTCTGATCAAGAAGTTGCTAATGAAGTCAAAGCTGGACTGAAAAGCCTGATTCC TACATTGGAAAAAAACAAAAACACCAGCAAAGGAATAGAAATGCTACTTGAAAAACTGAC TGCCTAAGTGGAAACAGTTAAGAACAAGTTGGAATCATTTTTCCTCTTCTGTTTTCCCAG CACAGGAAAGAAGGGCCATCTTACTGGGAATTTGGGTGCTCTGTATATGTGTTTCTTCTT TGTATAAGAATCTATTTATGAAATGGTTTCTAAAAATACCCTTTTTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAATTAAGTAAAGCTAAATATTCCAGAAATATTGTTAAGAAGTTTCTCATGTATGGGAA TAAAGCACAGATTGCAGAGATAATGAGAAGTTTTAAGGGCCATGTAAGGAAGATGCTGCG ACACGCAGAAGCCTCAGCCATCGTGGAGTACGCCTACAATGACAAGGCCATCTTGGAGCA AAGGAACATGCTGACGGAAGAGCTCTATGGGAACACATTTCAGCTTTACAAGTCAGCAGA TTGCCCAACTCTGGACAAAGTATTAGAGGTACAGCCAGAAAAACTAGAGCTTATCATGGA TGAAATGAAACAGATTTTAACTCCAATGGCCCAAAAAGAAGCTGTGATTAAGCACTCACT GGTACATAAAGTATTCCTGGACTTTTTTACTCATGCACCCCCAAAACTGAGATCAGAAAT GATTGAAGCTATCCGAGAAGCAGTGATATACCTGGCACACACACACGATGGTGCCAGAGT GGCCATGCACTGCCTGTGGCATGGCACACCCAAGGACAGGAAAGTGATTGTGAAAACAAT GAAGACTTATGTTGAAAAGGTAGCTAATGGCCAATACTCCCACTTGGTTTTACTGGCGGC ATTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCAGAAATTATTAA TTCCTTGCCTAACATAGTAAATGACAAATATGGAAGGAAGGTCCTGTTGTATTTACTAAG CCCCAGAGATCCTGCACACACTGTCCGAGAGATCATTGAAGTTCTGCAGAAAGGAGATGG TAATGCACACAGTAAGAAAGATACAGAGATCCGCCGACGAGAGCTCTTAGAATCCATTTC TCCAGCTTTGTTAAGCTACCTGCAAGGACATGCCCAAGAGGTGATGCTTGATAAGTCCGC ATGTGTGCTGGTGTCTGACATCCTGGGCGCCGCCATAGGGGATGTGCAGCCCGCCATGAA TGCCATCGCCAGCTTGGCAGCAGCAGAACTGCATCCCGGTGGCAAGGATGGAGAGCTTCA CATTGCAGAACATCCTGCAGGACATCTAGTTCTGAAGTGGTTAATAGAGCAAGATAAAAA GATGAAAGAAAGTGGAAGAGAAGGTTGTTTTGCAAAAACACTTGTAGAGCATGTTGGTAT GAAGAACCTGAAGTCCTGGGCCAGTGTCAATCGGGGAGCCATTATTCTTTCTAGCCTTCT CCAGAGTTCTGATCAAGAAGTTGCTAATGAAGTCAAAGCTGGACTGAAAAGCCTGATTCC TACATTGGAAAAAAACAAAAACACCAGCAAAGGAATAGAAATGCTACTTGAAAAACTGAC TGCCTAAGTGGAAACAGTTAAGAACAAGTTGGAATCATTTTTCCTCTTCTGTTTTCCCAG CACAGGAAAGAAGGGCCATCTTACTGGGAATTTGGGTGCTCTGTATATGTGTTTCTTCTT TGTATAAGAATCTATTTATGAAATGGTTTCTAAAAATACCCTTTTTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 416-520, - strand, RNAz p=0.686471 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 416-520, - strand, RNAz p=0.686471 |
| Aligned organism(s): 92 entry(ies) | More info |
| Aligned organism(s): 92 entry(ies) | Help | Less info |
| 57-232, gnl|bosTau2|chr8 (17005921-17006096) | |
| 57-232, gnl|canFam2|chr1 (94488573-94488718) | |
| 57-232, gnl|danRer3|chr10 (1209807-1209664) | |
| 57-232, gnl|dasNov1|scaffold_40225 (12237-12382) | |
| 57-232, gnl|echTel1|scaffold_306696 (3405-3261) | |
| 57-232, gnl|fr1|chrUn (202357867-202358011) | |
| 57-232, gnl|galGal2|chrZ_random (927944-928088) | |
| 57-232, gnl|hg17|chr9 (2819771-2819916) | |
| 57-232, gnl|Hg17|chr9 (2819949-2819774) | |
| 57-232, gnl|loxAfr1|scaffold_21118 (19591-19446) | |
| 57-232, gnl|mm7|chr19 (27121319-27121464) | |
| 57-232, gnl|Mm7|chr19 (27121497-27121322) | |
| 57-232, gnl|monDom2|scaffold_5 (114302387-114302243) | |
| 57-232, gnl|oryCun1|scaffold_196683 (7627-7482) | |
| 57-232, gnl|panTro1|chr11 (2784510-2784655) | |
| 57-232, gnl|rheMac2|chr15 (74409653-74409508) | |
| 57-232, gnl|rn3|chr1 (231106483-231106628) | |
| 57-232, gnl|tetNig1|chrUn_random (19626211-19626354) | |
| 57-232, gnl|xenTro1|scaffold_52 (2939883-2939738) | |
| 416-520, gnl|bosTau2|chr8 (17010918-17011022) | |
| 416-520, gnl|canFam2|chr1 (94483526-94483431) | |
| 416-520, gnl|canFam2|chr1 (94483419-94483545) | |
| 416-520, gnl|danRer3|chr10 (1212870-1212960) | |
| 416-520, gnl|danRer3|chr10 (1212973-1212863) | |
| 416-520, gnl|dasNov1|scaffold_40225 (9387-9293) | |
| 416-520, gnl|dasNov1|scaffold_40225 (9281-9405) | |
| 416-520, gnl|echTel1|scaffold_195816 (495-422) | |
| 416-520, gnl|echTel1|scaffold_306696 (7551-7428) | |
| 416-520, gnl|fr1|chrUn (202357069-202356979) | |
| 416-520, gnl|fr1|chrUn (202356962-202357084) | |
| 416-520, gnl|galGal2|chrZ_random (924849-924754) | |
| 416-520, gnl|galGal2|chrZ_random (924747-924867) | |
| 416-520, gnl|hg17|chr14 (51824831-51824923) | |
| 416-520, gnl|hg17|chr9 (2814709-2814834) | |
| 416-520, gnl|Hg17|chr9 (2814815-2814711) | |
| 416-520, gnl|loxAfr1|scaffold_72510 (4916-5011) | |
| 416-520, gnl|loxAfr1|scaffold_72510 (5010-4915) | |
| 416-520, gnl|mm7|chr19 (27116754-27116877) | |
| 416-520, gnl|Mm7|chr19 (27116858-27116754) | |
| 416-520, gnl|mm7|chrX (70658582-70658487) | |
| 416-520, gnl|monDom2|scaffold_5 (114311492-114311587) | |
| 416-520, gnl|monDom2|scaffold_5 (114311597-114311474) | |
| 416-520, gnl|oryCun1|scaffold_180238 (9471-9594) | |
| 416-520, gnl|oryCun1|scaffold_203692 (23179-23084) | |
| 416-520, gnl|panTro1|chr11 (2779435-2779560) | |
| 416-520, gnl|panTro1|chr15_random (10552162-10552255) | |
| 416-520, gnl|rheMac2|chr15 (74415006-74415101) | |
| 416-520, gnl|rheMac2|chr15 (74415113-74414988) | |
| 416-520, gnl|rn3|chr1 (231101903-231102026) | |
| 416-520, gnl|rn3|chrX (157392370-157392275) | |
| 416-520, gnl|tetNig1|chrUn_random (19625058-19624968) | |
| 416-520, gnl|tetNig1|chrUn_random (19624951-19625060) | |
| 416-520, gnl|xenTro1|scaffold_52 (2942647-2942742) | |
| 416-520, gnl|xenTro1|scaffold_52 (2942748-2942645) | |
| 788-1015, gnl|bosTau2|chr8 (17023846-17024073) | |
| 788-1015, gnl|canFam2|chr1 (94466819-94466676) | |
| 788-1015, gnl|canFam2|chr1 (94466583-94466819) | |
| 788-1015, gnl|danRer3|chr10 (1217572-1217713) | |
| 788-1015, gnl|danRer3|chr10 (1217802-1217569) | |
| 788-1015, gnl|dasNov1|scaffold_8668 (7024-6881) | |
| 788-1015, gnl|dasNov1|scaffold_8668 (6786-7024) | |
| 788-1015, gnl|echTel1|scaffold_195816 (146-4) | |
| 788-1015, gnl|echTel1|scaffold_306696 (15763-15535) | |
| 788-1015, gnl|fr1|chrUn (202355553-202355412) | |
| 788-1015, gnl|fr1|chrUn (202355322-202355555) | |
| 788-1015, gnl|galGal2|chrZ_random (917002-916859) | |
| 788-1015, gnl|galGal2|chrZ_random (916765-917002) | |
| 788-1015, gnl|hg17|chr14 (51825204-51825345) | |
| 788-1015, gnl|hg17|chr9 (2801351-2801588) | |
| 788-1015, gnl|Hg17|chr9 (2801587-2801361) | |
| 788-1015, gnl|loxAfr1|scaffold_72510 (5289-5432) | |
| 788-1015, gnl|loxAfr1|scaffold_72510 (5513-5293) | |
| 788-1015, gnl|mm7|chr19 (27098897-27099134) | |
| 788-1015, gnl|Mm7|chr19 (27099134-27098907) | |
| 788-1015, gnl|mm7|chrX (70658209-70658068) | |
| 788-1015, gnl|monDom2|scaffold_5 (114320350-114320493) | |
| 788-1015, gnl|monDom2|scaffold_5 (114320600-114320350) | |
| 788-1015, gnl|oryCun1|scaffold_200158 (68384-68147) | |
| 788-1015, gnl|oryCun1|scaffold_203692 (22806-22663) | |
| 788-1015, gnl|panTro1|chr11 (2766079-2766316) | |
| 788-1015, gnl|panTro1|chr15_random (10552536-10552677) | |
| 788-1015, gnl|rheMac2|chr15 (74427603-74427746) | |
| 788-1015, gnl|rheMac2|chr15 (74427840-74427603) | |
| 788-1015, gnl|rn3|chr1 (231084132-231084369) | |
| 788-1015, gnl|rn3|chrX (157391997-157391854) | |
| 788-1015, gnl|tetNig1|chrUn_random (19624288-19624147) | |
| 788-1015, gnl|tetNig1|chrUn_random (19624060-19624290) | |
| 788-1015, gnl|xenTro1|scaffold_52 (2949668-2949847) | |
| 788-1015, gnl|xenTro1|scaffold_52 (2951263-2951024) | |
| 1186-1488, gnl|bosTau2|chr8 (17031418-17031727) | |
| 1186-1488, gnl|Hg17|chr9 (2794472-2794156) | |
| 1186-1488, gnl|Mm7|chr19 (27090347-27090066) |
| Aligned organism(s): 92 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 57-232, gnl|bosTau2|chr8 (17005921-17006096) | |
| 57-232, gnl|canFam2|chr1 (94488573-94488718) | |
| 57-232, gnl|danRer3|chr10 (1209807-1209664) | |
| 57-232, gnl|dasNov1|scaffold_40225 (12237-12382) | |
| 57-232, gnl|echTel1|scaffold_306696 (3405-3261) | |
| 57-232, gnl|fr1|chrUn (202357867-202358011) | |
| 57-232, gnl|galGal2|chrZ_random (927944-928088) | |
| 57-232, gnl|hg17|chr9 (2819771-2819916) | |
| 57-232, gnl|Hg17|chr9 (2819949-2819774) | |
| 57-232, gnl|loxAfr1|scaffold_21118 (19591-19446) | |
| 57-232, gnl|mm7|chr19 (27121319-27121464) | |
| 57-232, gnl|Mm7|chr19 (27121497-27121322) | |
| 57-232, gnl|monDom2|scaffold_5 (114302387-114302243) | |
| 57-232, gnl|oryCun1|scaffold_196683 (7627-7482) | |
| 57-232, gnl|panTro1|chr11 (2784510-2784655) | |
| 57-232, gnl|rheMac2|chr15 (74409653-74409508) | |
| 57-232, gnl|rn3|chr1 (231106483-231106628) | |
| 57-232, gnl|tetNig1|chrUn_random (19626211-19626354) | |
| 57-232, gnl|xenTro1|scaffold_52 (2939883-2939738) | |
| 416-520, gnl|bosTau2|chr8 (17010918-17011022) | |
| 416-520, gnl|canFam2|chr1 (94483526-94483431) | |
| 416-520, gnl|canFam2|chr1 (94483419-94483545) | |
| 416-520, gnl|danRer3|chr10 (1212870-1212960) | |
| 416-520, gnl|danRer3|chr10 (1212973-1212863) | |
| 416-520, gnl|dasNov1|scaffold_40225 (9387-9293) | |
| 416-520, gnl|dasNov1|scaffold_40225 (9281-9405) | |
| 416-520, gnl|echTel1|scaffold_195816 (495-422) | |
| 416-520, gnl|echTel1|scaffold_306696 (7551-7428) | |
| 416-520, gnl|fr1|chrUn (202357069-202356979) | |
| 416-520, gnl|fr1|chrUn (202356962-202357084) | |
| 416-520, gnl|galGal2|chrZ_random (924849-924754) | |
| 416-520, gnl|galGal2|chrZ_random (924747-924867) | |
| 416-520, gnl|hg17|chr14 (51824831-51824923) | |
| 416-520, gnl|hg17|chr9 (2814709-2814834) | |
| 416-520, gnl|Hg17|chr9 (2814815-2814711) | |
| 416-520, gnl|loxAfr1|scaffold_72510 (4916-5011) | |
| 416-520, gnl|loxAfr1|scaffold_72510 (5010-4915) | |
| 416-520, gnl|mm7|chr19 (27116754-27116877) | |
| 416-520, gnl|Mm7|chr19 (27116858-27116754) | |
| 416-520, gnl|mm7|chrX (70658582-70658487) | |
| 416-520, gnl|monDom2|scaffold_5 (114311492-114311587) | |
| 416-520, gnl|monDom2|scaffold_5 (114311597-114311474) | |
| 416-520, gnl|oryCun1|scaffold_180238 (9471-9594) | |
| 416-520, gnl|oryCun1|scaffold_203692 (23179-23084) | |
| 416-520, gnl|panTro1|chr11 (2779435-2779560) | |
| 416-520, gnl|panTro1|chr15_random (10552162-10552255) | |
| 416-520, gnl|rheMac2|chr15 (74415006-74415101) | |
| 416-520, gnl|rheMac2|chr15 (74415113-74414988) | |
| 416-520, gnl|rn3|chr1 (231101903-231102026) | |
| 416-520, gnl|rn3|chrX (157392370-157392275) | |
| 416-520, gnl|tetNig1|chrUn_random (19625058-19624968) | |
| 416-520, gnl|tetNig1|chrUn_random (19624951-19625060) | |
| 416-520, gnl|xenTro1|scaffold_52 (2942647-2942742) | |
| 416-520, gnl|xenTro1|scaffold_52 (2942748-2942645) | |
| 788-1015, gnl|bosTau2|chr8 (17023846-17024073) | |
| 788-1015, gnl|canFam2|chr1 (94466819-94466676) | |
| 788-1015, gnl|canFam2|chr1 (94466583-94466819) | |
| 788-1015, gnl|danRer3|chr10 (1217572-1217713) | |
| 788-1015, gnl|danRer3|chr10 (1217802-1217569) | |
| 788-1015, gnl|dasNov1|scaffold_8668 (7024-6881) | |
| 788-1015, gnl|dasNov1|scaffold_8668 (6786-7024) | |
| 788-1015, gnl|echTel1|scaffold_195816 (146-4) | |
| 788-1015, gnl|echTel1|scaffold_306696 (15763-15535) | |
| 788-1015, gnl|fr1|chrUn (202355553-202355412) | |
| 788-1015, gnl|fr1|chrUn (202355322-202355555) | |
| 788-1015, gnl|galGal2|chrZ_random (917002-916859) | |
| 788-1015, gnl|galGal2|chrZ_random (916765-917002) | |
| 788-1015, gnl|hg17|chr14 (51825204-51825345) | |
| 788-1015, gnl|hg17|chr9 (2801351-2801588) | |
| 788-1015, gnl|Hg17|chr9 (2801587-2801361) | |
| 788-1015, gnl|loxAfr1|scaffold_72510 (5289-5432) | |
| 788-1015, gnl|loxAfr1|scaffold_72510 (5513-5293) | |
| 788-1015, gnl|mm7|chr19 (27098897-27099134) | |
| 788-1015, gnl|Mm7|chr19 (27099134-27098907) | |
| 788-1015, gnl|mm7|chrX (70658209-70658068) | |
| 788-1015, gnl|monDom2|scaffold_5 (114320350-114320493) | |
| 788-1015, gnl|monDom2|scaffold_5 (114320600-114320350) | |
| 788-1015, gnl|oryCun1|scaffold_200158 (68384-68147) | |
| 788-1015, gnl|oryCun1|scaffold_203692 (22806-22663) | |
| 788-1015, gnl|panTro1|chr11 (2766079-2766316) | |
| 788-1015, gnl|panTro1|chr15_random (10552536-10552677) | |
| 788-1015, gnl|rheMac2|chr15 (74427603-74427746) | |
| 788-1015, gnl|rheMac2|chr15 (74427840-74427603) | |
| 788-1015, gnl|rn3|chr1 (231084132-231084369) | |
| 788-1015, gnl|rn3|chrX (157391997-157391854) | |
| 788-1015, gnl|tetNig1|chrUn_random (19624288-19624147) | |
| 788-1015, gnl|tetNig1|chrUn_random (19624060-19624290) | |
| 788-1015, gnl|xenTro1|scaffold_52 (2949668-2949847) | |
| 788-1015, gnl|xenTro1|scaffold_52 (2951263-2951024) | |
| 1186-1488, gnl|bosTau2|chr8 (17031418-17031727) | |
| 1186-1488, gnl|Hg17|chr9 (2794472-2794156) | |
| 1186-1488, gnl|Mm7|chr19 (27090347-27090066) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cte (0.29274) | |
| ssp (0.271039) | |
| lyg (0.266205) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| aor (0.195274) | |
| cut (0.169924) | |
| nca (0.136874) | |
| kid (0.129735) | |
| bla (0.124347) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| ssp (0.271039) | |
| lyg (0.266205) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| aor (0.195274) | |
| cut (0.169924) | |
| nca (0.136874) | |
| kid (0.129735) | |
| bla (0.124347) |