Non-Coding RNA Search

Ss1.1-Mixc-0034a23.5

Sequence:


               
               GCGCTCCGAGAGCCGAGTGCCACCGCCATCGGACGCGCCCCTACCCTTCGACCGCGTGCT
GGTGAACGAGCAGGGACATTACGACGCCGTCACGGGCAAGTTCACCTGCCAGGTGCCCGG
GGTCTACTACTTCGCCGTCCACGCCACCGTCTACAGGGCTAGCCTGCAGTTCGATCTGGT
CAAGAATGGCGAGTCCATCGCCTCTTTCTTCCAGTTCTTTGGGGGGTGGCCCAAGCCAGC
CTCGCTCTCCGGGGGCGCCATGGTGAGGCTGGAGCCCGAGGACCAGGTGTGGGTACAGGT
GGGCGTGGGTGACTACATTGGCATCTATGCCAGCATCAAGACAGACAGCACCTTCTCTGG
ATTTCTAGTGTATTCCGATTGGCACAGCTCCCCTGTCTTTGCTTGATGCCCGCTGGAAAG
TGAGCCCGTGCTCTCTCACTCCGAGGTGTGACACTGAGGGCCACATCATCCTGGAGGGCT
GGCCCCCCTGGAATGTTGTGTAGGACTGCAGAGGTGGGATGGGGGCCTCTCCCTTCTGCT
GCCTCAGGGAATGGGGACAGAGACTCTGAGATCAGGGCTGGCAGCATGGGGCAGTGGCTG
GATTTCTGCCCTAGACCAAAGGAGTGCGCTGTGCTGGCAGGGTCCCCCCAGTTGTTCTGG
CCCAGAACCCCAAAGTGGGGTGCTCCTTTCCTGGTCCTCTGCTTCTCTGGGTCCTCCCTC
ATCTCTCCTGTTCCTGGGCTCTTTTCTCAGAGATCATTCAATAAATCTAAGAAAACCTCA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCTCCGAGAGCCGAGTGCCACCGCCATCGGACGCGCCCCTACCCTTCGACCGCGTGCT
GGTGAACGAGCAGGGACATTACGACGCCGTCACGGGCAAGTTCACCTGCCAGGTGCCCGG
GGTCTACTACTTCGCCGTCCACGCCACCGTCTACAGGGCTAGCCTGCAGTTCGATCTGGT
CAAGAATGGCGAGTCCATCGCCTCTTTCTTCCAGTTCTTTGGGGGGTGGCCCAAGCCAGC
CTCGCTCTCCGGGGGCGCCATGGTGAGGCTGGAGCCCGAGGACCAGGTGTGGGTACAGGT
GGGCGTGGGTGACTACATTGGCATCTATGCCAGCATCAAGACAGACAGCACCTTCTCTGG
ATTTCTAGTGTATTCCGATTGGCACAGCTCCCCTGTCTTTGCTTGATGCCCGCTGGAAAG
TGAGCCCGTGCTCTCTCACTCCGAGGTGTGACACTGAGGGCCACATCATCCTGGAGGGCT
GGCCCCCCTGGAATGTTGTGTAGGACTGCAGAGGTGGGATGGGGGCCTCTCCCTTCTGCT
GCCTCAGGGAATGGGGACAGAGACTCTGAGATCAGGGCTGGCAGCATGGGGCAGTGGCTG
GATTTCTGCCCTAGACCAAAGGAGTGCGCTGTGCTGGCAGGGTCCCCCCAGTTGTTCTGG
CCCAGAACCCCAAAGTGGGGTGCTCCTTTCCTGGTCCTCTGCTTCTCTGGGTCCTCCCTC
ATCTCTCCTGTTCCTGGGCTCTTTTCTCAGAGATCATTCAATAAATCTAAGAAAACCTCA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37181891|gb|AAQ88749.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37181891|gb|AAQ88749.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.571003
               

               
               320-624, + strand, RNAz p=0.671298

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.571003
               

               
               320-624, + strand, RNAz p=0.671298

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015645, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015645, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-777, gnl|bosTau2|chr15 (14425650-14424874)
               

               
               1-777, gnl|Hg17|chr11 (118715656-118714865)
               

               
               1-777, gnl|Mm7|chr9 (44042752-44043526)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-777, gnl|bosTau2|chr15 (14425650-14424874)
               

               
               1-777, gnl|Hg17|chr11 (118715656-118714865)
               

               
               1-777, gnl|Mm7|chr9 (44042752-44043526)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.526039)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.526039)
               

               
               eje (0.0988338)

	40-159, - strand, RNAz p=0.571003
	320-624, + strand, RNAz p=0.671298

	1-777, gnl\|bosTau2\|chr15 (14425650-14424874)
	1-777, gnl\|Hg17\|chr11 (118715656-118714865)
	1-777, gnl\|Mm7\|chr9 (44042752-44043526)