Non-Coding RNA Search

Ss1.1-Mixc-0034c12.5

Sequence:


               
               AAAGTATAAAGTTGCTGCTAACATATATACATATATATCCACATTTTATAAGGGTGTCTA
TGTATATATAGACAGTGTGTCCACACAAAAAGATAGATATAGCTATCATTCAGTTCTTCC
ATGCTTTACTTTTTAATTTTTTTAAGGTAGAAAAGCTATTGTAACATCGTTTTCAATTTG
TTATTAATTTTATGACATACTGATATTACTTAATATTAAAAAATTTTAATTTTTAAGGGA
AATGAGGAATGCACATCAGTGATTGTCAAACCTCACCCCCTTAATTTCCTAACCAATCTT
TTCCACCGCCCCAACCCACCAAATCATATCCACAAATACTATTTTGTTAGCCAGGCTTCC
AACAAAGTTCAGTATTTCTAACACTCTAGTGCAATAAAACATTATTAAATATCTAAGAGG
TGTGCATGTGGGAAAGGTCAGTGCATATCCCTTTAGGAGGGGAGAATGTTGTAATATATC
AGCTATTCAAGATGTTTAAAAAACAGTGTATTCAATCGTATATTGTCTATAGTATGTGCT
ATGAAATTTGCATTTATGATATGTAACAGGGGCAAAGCCAAACTCATGTTACTCTGTTCA
GTCAGAAACATTTTTTGTGGCATACAGCATTCCTGGGAAGTGCTGTTCTTTGTTTTTTCT
TTTGGTTTTAGTTTTGCATTTAGAGTGCCTTATAATTGATGCCTATTTTAATAGCATTTC
TTTTTAGCTTTCGGTTTATATTTTCATTAGTTGTTCATATATGTTTCTCTTCCAATTAAA
GCATTATCTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGTATAAAGTTGCTGCTAACATATATACATATATATCCACATTTTATAAGGGTGTCTA
TGTATATATAGACAGTGTGTCCACACAAAAAGATAGATATAGCTATCATTCAGTTCTTCC
ATGCTTTACTTTTTAATTTTTTTAAGGTAGAAAAGCTATTGTAACATCGTTTTCAATTTG
TTATTAATTTTATGACATACTGATATTACTTAATATTAAAAAATTTTAATTTTTAAGGGA
AATGAGGAATGCACATCAGTGATTGTCAAACCTCACCCCCTTAATTTCCTAACCAATCTT
TTCCACCGCCCCAACCCACCAAATCATATCCACAAATACTATTTTGTTAGCCAGGCTTCC
AACAAAGTTCAGTATTTCTAACACTCTAGTGCAATAAAACATTATTAAATATCTAAGAGG
TGTGCATGTGGGAAAGGTCAGTGCATATCCCTTTAGGAGGGGAGAATGTTGTAATATATC
AGCTATTCAAGATGTTTAAAAAACAGTGTATTCAATCGTATATTGTCTATAGTATGTGCT
ATGAAATTTGCATTTATGATATGTAACAGGGGCAAAGCCAAACTCATGTTACTCTGTTCA
GTCAGAAACATTTTTTGTGGCATACAGCATTCCTGGGAAGTGCTGTTCTTTGTTTTTTCT
TTTGGTTTTAGTTTTGCATTTAGAGTGCCTTATAATTGATGCCTATTTTAATAGCATTTC
TTTTTAGCTTTCGGTTTATATTTTCATTAGTTGTTCATATATGTTTCTCTTCCAATTAAA
GCATTATCTGTT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-114, + strand, RNAz p=0.995877
               

               
               193-302, - strand, RNAz p=0.892947
               

               
               564-719, - strand, RNAz p=0.948874

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-114, + strand, RNAz p=0.995877
               

               
               193-302, - strand, RNAz p=0.892947
               

               
               564-719, - strand, RNAz p=0.948874

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               14-78, + strand, RNAmicro p=0.922867

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               14-78, + strand, RNAmicro p=0.922867

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               1-114, DA117053 BRACE3 Homo sapiens cDNA clone BRACE3036607 5', mRNA 
(dbj|DA117053.1|), blast E-value=3.00018e-42, identity=95.61% 
               

               
               1-114, AJ693631 KN261 Bos taurus cDNA clone KN261-041_N02, mRNA sequence 
(emb|AJ693631.1|), blast E-value=7.00649e-43, identity=95.61% 
               

               
               1-114, CR453403 Normalized and Subtracted bovine embryonic and 
(emb|CR453403.2|), blast E-value=7.00649e-43, identity=95.61% 
               

               
               1-114, zw86d01.r1 Soares_total_fetus_Nb2HF8_9w Homo sapiens cDNA clone 
(gb|AA447071.1|), blast E-value=3.00018e-42, identity=95.61% 
               

               
               1-114, 601555988F1 NIH_MGC_58 Homo sapiens cDNA clone IMAGE (gb|BE738949.1|), 
blast E-value=3.00018e-42, identity=95.61% 
               

               
               1-114, 602362504F1 NIH_MGC_90 Homo sapiens cDNA clone IMAGE (gb|BG250358.1|), 
blast E-value=3.00018e-42, identity=95.61%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1-114, DA117053 BRACE3 Homo sapiens cDNA clone BRACE3036607 5', mRNA 
(dbj|DA117053.1|), blast E-value=3.00018e-42, identity=95.61% 
               

               
               1-114, AJ693631 KN261 Bos taurus cDNA clone KN261-041_N02, mRNA sequence 
(emb|AJ693631.1|), blast E-value=7.00649e-43, identity=95.61% 
               

               
               1-114, CR453403 Normalized and Subtracted bovine embryonic and 
(emb|CR453403.2|), blast E-value=7.00649e-43, identity=95.61% 
               

               
               1-114, zw86d01.r1 Soares_total_fetus_Nb2HF8_9w Homo sapiens cDNA clone 
(gb|AA447071.1|), blast E-value=3.00018e-42, identity=95.61% 
               

               
               1-114, 601555988F1 NIH_MGC_58 Homo sapiens cDNA clone IMAGE (gb|BE738949.1|), 
blast E-value=3.00018e-42, identity=95.61% 
               

               
               1-114, 602362504F1 NIH_MGC_90 Homo sapiens cDNA clone IMAGE (gb|BG250358.1|), 
blast E-value=3.00018e-42, identity=95.61%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-792, gnl|bosTau2|chr8 (16179498-16180290)
               

               
               1-792, gnl|Hg17|chr9 (8307008-8306241)
               

               
               1-792, gnl|Mm7|chr4 (75347789-75347006)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-792, gnl|bosTau2|chr8 (16179498-16180290)
               

               
               1-792, gnl|Hg17|chr9 (8307008-8306241)
               

               
               1-792, gnl|Mm7|chr4 (75347789-75347006)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               liv (0.292569)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

	1-114, + strand, RNAz p=0.995877
	193-302, - strand, RNAz p=0.892947
	564-719, - strand, RNAz p=0.948874

	1-114, DA117053 BRACE3 Homo sapiens cDNA clone BRACE3036607 5', mRNA (dbj\|DA117053.1\|), blast E-value=3.00018e-42, identity=95.61%
	1-114, AJ693631 KN261 Bos taurus cDNA clone KN261-041_N02, mRNA sequence (emb\|AJ693631.1\|), blast E-value=7.00649e-43, identity=95.61%
	1-114, CR453403 Normalized and Subtracted bovine embryonic and (emb\|CR453403.2\|), blast E-value=7.00649e-43, identity=95.61%
	1-114, zw86d01.r1 Soares_total_fetus_Nb2HF8_9w Homo sapiens cDNA clone (gb\|AA447071.1\|), blast E-value=3.00018e-42, identity=95.61%
	1-114, 601555988F1 NIH_MGC_58 Homo sapiens cDNA clone IMAGE (gb\|BE738949.1\|), blast E-value=3.00018e-42, identity=95.61%
	1-114, 602362504F1 NIH_MGC_90 Homo sapiens cDNA clone IMAGE (gb\|BG250358.1\|), blast E-value=3.00018e-42, identity=95.61%

	1-792, gnl\|bosTau2\|chr8 (16179498-16180290)
	1-792, gnl\|Hg17\|chr9 (8307008-8306241)
	1-792, gnl\|Mm7\|chr4 (75347789-75347006)