Ss1.1-Mixc-0034d22.5
|
TCCTGCGAGTACCGGTGTGGACGGTGGGGATCGTGGCTGCCGGTTTTCCTGTTCTCCCCC
TCCCCTACTCTCCTCCCTCCCTCCCTTTCCCTCCCTCGGCGGCGGTCGACCGCCAGTCGC
ACACTCCCTGACCCATCCCTAACCCTTTCCTGGTTTCGGGGCCACCAGATTGGCCTTTTT
CTGTTTCCCGGCCCAGCGTCAGGGCGTAGGCCTTGAGTGAGAGGCGCTGCCGCGGAGAAG
AGAAAAGACGAGACGACCCTCAGCTCTCCTGCGGGATCGCTCGGCTCGCCGCCGCCATGG
CAATGAGGCAAACGCCTCTCACTTGCTCCGGCCACACGCGGCCTGTGGTGGATTTGGCCT
TCAGTGGCATCACGCCTTATGGCTATTTCTTAATCAGTGCTTGCAAAGATGGCAAACCTA
TGCTACGCCAGGGAGATACAGGAGACTGGATTGGAACGTTTTTGGGTCATAAGGGTGCTG
TTTGGGGTGCAACATTGAATAAGGATGCCACCAAAGCAGCTACAGCAGCTGCAGATTTCA
CAGCCAAAGTATGGGATGCTGTCTCAGGAGATGAATTGATGACCCTGGCTCATAAACACA
TTGTCAAGACTGTGGATTTTACACAGGATAGTAATTACTTGTTAACTGGAGGACAGGATA
AACTGTTACGCATATATGACTTGAACAAACCTGAAGCAGAACCTAAGGAAATCAGTGGTC
ACAGTTCTGGTATTAAAAAGGCTCTGTGGTGCAGTGAGGATAAACAGATTCTTTCAGCTG
ATGATAAAACTGTTCGCCTTTGGGACCATGCTACTATGACAGAAGTGAAATCTCTAAATT
TTAATATGTCTGTTAGCAGTATGGAATATATTCCTGAGGGAGAGATCTTGGTAATAACTT
ATGGACGATCTATTGCTTTTCATAGTGCAATAAGTTTGGACCCAATTAAATCCTTTGAAG
CTCCTGCAACCATCAATTCTGCATCTCTTCATCCTGAGAAAGAATTTCTTGTTGCAGGTG
GTGAAGATTTTAAACTTTATAAGTATGATTATAATAGTGGAGAAGAATTAGAATCCTACA
AAGGACACTTTGGTCCTATTCACTGTGTGAGGTTTAGTCCTGATGGAGAACTCTACGCTA
GTGGTTCTGAAGATGGAACATTGAGACTGTGGCAAACTGTGGTTGGAAAAACATATGGCC
TTTGGAAATGTGTGCTTCCTGAAGAAGATAGTGGTGAGCTGGCAAAGCCAAAGATCAGTT
TTCCAGAGACAGCAGAAGAGGAGCTAGAAGAAATTACTTCAGAGAATTCAGATTCCATCT
ATAGTTCAACTCCTGAAGTGAAGGCCTGAGCATCAGGCAGGTGCCACAGGTAGTACAAAA
CTTACGGACTAAAACAAGCAGTGGAGAAAAGCATCAGCCTCCAGAGTTACTTTCTGCTTA
AGGCCAAACATGAGCAGTAAATAATGAGGAATATGAATTAGCTCCAGTGCTGGAACTAAC
CAACTTGGTGTTAACTGTAAGTGAAAACGCAAGAGTATCAGCTGAAGGCAAGTGGAGTTA
TGCTCTTGTAGAACGGTGGCCTGTTGTCTTTTTAATGAATATGTGCAAGCCAACATCCAG
TTTCTCTTATTACAATTAGATTTCTTGTAGTTTTTTATGTTATGATGAAGAAGGAAAATA
TATTGGCTTATTTTTCTGACTTTGCCCTTAAAGCAGAAAGCCGGTTTTTTTTGTTTTTTG
TTTTTTGTGTTTTTTTTTTTTTGGCTCTAGTTATAAAGAAGAGGGAATAAATACATGATA
AAATGACTTGTTGGATTTCTCTTTCATTGTACACTGCTTCCAAACATCTAATTGTTTTCA
GTTATCTAAATAAAATGTCTCTAAAACAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCCTGCGAGTACCGGTGTGGACGGTGGGGATCGTGGCTGCCGGTTTTCCTGTTCTCCCCC
TCCCCTACTCTCCTCCCTCCCTCCCTTTCCCTCCCTCGGCGGCGGTCGACCGCCAGTCGC
ACACTCCCTGACCCATCCCTAACCCTTTCCTGGTTTCGGGGCCACCAGATTGGCCTTTTT
CTGTTTCCCGGCCCAGCGTCAGGGCGTAGGCCTTGAGTGAGAGGCGCTGCCGCGGAGAAG
AGAAAAGACGAGACGACCCTCAGCTCTCCTGCGGGATCGCTCGGCTCGCCGCCGCCATGG
CAATGAGGCAAACGCCTCTCACTTGCTCCGGCCACACGCGGCCTGTGGTGGATTTGGCCT
TCAGTGGCATCACGCCTTATGGCTATTTCTTAATCAGTGCTTGCAAAGATGGCAAACCTA
TGCTACGCCAGGGAGATACAGGAGACTGGATTGGAACGTTTTTGGGTCATAAGGGTGCTG
TTTGGGGTGCAACATTGAATAAGGATGCCACCAAAGCAGCTACAGCAGCTGCAGATTTCA
CAGCCAAAGTATGGGATGCTGTCTCAGGAGATGAATTGATGACCCTGGCTCATAAACACA
TTGTCAAGACTGTGGATTTTACACAGGATAGTAATTACTTGTTAACTGGAGGACAGGATA
AACTGTTACGCATATATGACTTGAACAAACCTGAAGCAGAACCTAAGGAAATCAGTGGTC
ACAGTTCTGGTATTAAAAAGGCTCTGTGGTGCAGTGAGGATAAACAGATTCTTTCAGCTG
ATGATAAAACTGTTCGCCTTTGGGACCATGCTACTATGACAGAAGTGAAATCTCTAAATT
TTAATATGTCTGTTAGCAGTATGGAATATATTCCTGAGGGAGAGATCTTGGTAATAACTT
ATGGACGATCTATTGCTTTTCATAGTGCAATAAGTTTGGACCCAATTAAATCCTTTGAAG
CTCCTGCAACCATCAATTCTGCATCTCTTCATCCTGAGAAAGAATTTCTTGTTGCAGGTG
GTGAAGATTTTAAACTTTATAAGTATGATTATAATAGTGGAGAAGAATTAGAATCCTACA
AAGGACACTTTGGTCCTATTCACTGTGTGAGGTTTAGTCCTGATGGAGAACTCTACGCTA
GTGGTTCTGAAGATGGAACATTGAGACTGTGGCAAACTGTGGTTGGAAAAACATATGGCC
TTTGGAAATGTGTGCTTCCTGAAGAAGATAGTGGTGAGCTGGCAAAGCCAAAGATCAGTT
TTCCAGAGACAGCAGAAGAGGAGCTAGAAGAAATTACTTCAGAGAATTCAGATTCCATCT
ATAGTTCAACTCCTGAAGTGAAGGCCTGAGCATCAGGCAGGTGCCACAGGTAGTACAAAA
CTTACGGACTAAAACAAGCAGTGGAGAAAAGCATCAGCCTCCAGAGTTACTTTCTGCTTA
AGGCCAAACATGAGCAGTAAATAATGAGGAATATGAATTAGCTCCAGTGCTGGAACTAAC
CAACTTGGTGTTAACTGTAAGTGAAAACGCAAGAGTATCAGCTGAAGGCAAGTGGAGTTA
TGCTCTTGTAGAACGGTGGCCTGTTGTCTTTTTAATGAATATGTGCAAGCCAACATCCAG
TTTCTCTTATTACAATTAGATTTCTTGTAGTTTTTTATGTTATGATGAAGAAGGAAAATA
TATTGGCTTATTTTTCTGACTTTGCCCTTAAAGCAGAAAGCCGGTTTTTTTTGTTTTTTG
TTTTTTGTGTTTTTTTTTTTTTGGCTCTAGTTATAAAGAAGAGGGAATAAATACATGATA
AAATGACTTGTTGGATTTCTCTTTCATTGTACACTGCTTCCAAACATCTAATTGTTTTCA
GTTATCTAAATAAAATGTCTCTAAAACAAAAAAAAAAAAAAAAAAAAA
|
|
1-411, gnl|bosTau2|chr5 (55203780-55204200) |
|
1-411, gnl|Hg17|chr12 (15926598-15927023) |
|
1-411, gnl|Mm7|chr6 (137779833-137780181) |
| |
|
697-1736, gnl|bosTau2|chr16 (46559937-46560943) |
|
697-1736, gnl|Hg17|chr2 (37956103-37957139) |
|
697-1736, gnl|Mm7|chr6 (137786014-137795686) |
| |
|
1748-1889, gnl|bosTau2|chr5 (55237377-55237513) |
|
1748-1889, gnl|canFam2|chr27 (33819756-33819360) |
|
1748-1889, gnl|dasNov1|scaffold_253265 (1214-840) |
|
1748-1889, gnl|echTel1|scaffold_320373 (4990-4626) |
|
1748-1889, gnl|galGal2|chr1 (59728073-59728414) |
|
1748-1889, gnl|hg17|chr12 (15947264-15947640) |
|
1748-1889, gnl|Hg17|chr12 (15947543-15947677) |
|
1748-1889, gnl|loxAfr1|scaffold_4191 (27008-26660) |
|
1748-1889, gnl|mm7|chr6 (137795407-137795772) |
|
1748-1889, gnl|Mm7|chr6 (137795675-137795808) |
|
1748-1889, gnl|monDom2|scaffold_31 (10007268-10006897) |
|
1748-1889, gnl|oryCun1|scaffold_199335 (226446-226068) |
|
1748-1889, gnl|panTro1|chrUn_random (42222508-42222884) |
|
1748-1889, gnl|rheMac2|chr11 (16308881-16309267) |
|
1748-1889, gnl|rn3|chr4 (175122483-175122836) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-411, gnl|bosTau2|chr5 (55203780-55204200) |
|
1-411, gnl|Hg17|chr12 (15926598-15927023) |
|
1-411, gnl|Mm7|chr6 (137779833-137780181) |
| |
|
697-1736, gnl|bosTau2|chr16 (46559937-46560943) |
|
697-1736, gnl|Hg17|chr2 (37956103-37957139) |
|
697-1736, gnl|Mm7|chr6 (137786014-137795686) |
| |
|
1748-1889, gnl|bosTau2|chr5 (55237377-55237513) |
|
1748-1889, gnl|canFam2|chr27 (33819756-33819360) |
|
1748-1889, gnl|dasNov1|scaffold_253265 (1214-840) |
|
1748-1889, gnl|echTel1|scaffold_320373 (4990-4626) |
|
1748-1889, gnl|galGal2|chr1 (59728073-59728414) |
|
1748-1889, gnl|hg17|chr12 (15947264-15947640) |
|
1748-1889, gnl|Hg17|chr12 (15947543-15947677) |
|
1748-1889, gnl|loxAfr1|scaffold_4191 (27008-26660) |
|
1748-1889, gnl|mm7|chr6 (137795407-137795772) |
|
1748-1889, gnl|Mm7|chr6 (137795675-137795808) |
|
1748-1889, gnl|monDom2|scaffold_31 (10007268-10006897) |
|
1748-1889, gnl|oryCun1|scaffold_199335 (226446-226068) |
|
1748-1889, gnl|panTro1|chrUn_random (42222508-42222884) |
|
1748-1889, gnl|rheMac2|chr11 (16308881-16309267) |
|
1748-1889, gnl|rn3|chr4 (175122483-175122836) |
|
vin (0.997672) |
|
ldo (0.970026) |
|
spc (0.906927) |
|
spl (0.715922) |
|
gul (0.710353) |
|
ece (0.687916) |
|
kid (0.648677) |
|
tes (0.623441) |
|
bfe (0.599431) |
|
cte (0.58548) |
|
cty (0.5204) |
|
ova (0.516529) |
|
cbe (0.478469) |
|
isp (0.451128) |
|
liv (0.438853) |
|
ste (0.405625) |
|
lyg (0.399308) |
|
fcc (0.39557) |
|
ret (0.3862) |
|
elu (0.385356) |
|
sug (0.381874) |
|
thg (0.380373) |
|
pgl (0.35545) |
|
jca (0.34188) |
|
eye (0.341006) |
|
fco (0.314416) |
|
tbr (0.308356) |
|
cag (0.302389) |
|
ski (0.29347) |
|
fce (0.271592) |
|
ese (0.253004) |
|
bla (0.248694) |
|
tra (0.246184) |
|
ebs (0.236602) |
|
mgp (0.230681) |
|
nms (0.213858) |
|
mas (0.210305) |
|
hea (0.204499) |
|
aor (0.195274) |
|
sag (0.182715) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
nje (0.16592) |
|
cje (0.165235) |
|
csp (0.161186) |
|
mga (0.160205) |
|
fat (0.147427) |
|
lin (0.145603) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
che (0.136314) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
ute (0.132784) |
|
cly (0.120642) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
vin (0.997672) |
|
ldo (0.970026) |
|
spc (0.906927) |
|
spl (0.715922) |
|
gul (0.710353) |
|
ece (0.687916) |
|
kid (0.648677) |
|
tes (0.623441) |
|
bfe (0.599431) |
|
cte (0.58548) |
|
cty (0.5204) |
|
ova (0.516529) |
|
cbe (0.478469) |
|
isp (0.451128) |
|
liv (0.438853) |
|
ste (0.405625) |
|
lyg (0.399308) |
|
fcc (0.39557) |
|
ret (0.3862) |
|
elu (0.385356) |
|
sug (0.381874) |
|
thg (0.380373) |
|
pgl (0.35545) |
|
jca (0.34188) |
|
eye (0.341006) |
|
fco (0.314416) |
|
tbr (0.308356) |
|
cag (0.302389) |
|
ski (0.29347) |
|
fce (0.271592) |
|
ese (0.253004) |
|
bla (0.248694) |
|
tra (0.246184) |
|
ebs (0.236602) |
|
mgp (0.230681) |
|
nms (0.213858) |
|
mas (0.210305) |
|
hea (0.204499) |
|
aor (0.195274) |
|
sag (0.182715) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
nje (0.16592) |
|
cje (0.165235) |
|
csp (0.161186) |
|
mga (0.160205) |
|
fat (0.147427) |
|
lin (0.145603) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
che (0.136314) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
ute (0.132784) |
|
cly (0.120642) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
