Non-Coding RNA Search

Ss1.1-Mixc-0034e21.5

Sequence:


               
               GGGGCGCCGAGCGCAGGCCCAATGGCCTAGGCCCCGAGCGCGGCGTGGGTCGCGTGGGCG
CCGAGGCCGAGCCGCTACCCGTCCAGCTCAACGGTGCCCCGGGGGAGCCCGCGCCCGCTG
GGCCCCGCGACGCTGACGGGCTGGACCTCGAGGAGAGCTCCTCGTCTGAGCACGCCGAGC
GGCCCCCTGGGCCCCGCAGGTCCGAGCGCGGCCCTCGGGCCAAGAGCAAGGCTCGGGCGA
GCCAGGTAAAGCCCGGGGACAGCCTGCCACGGCGCGGGCCGGGGGCGCCCGGGCCGGGGG
CGCCCGCGACTGGGGCCGGGGAGGAGCGCGGCGGGGTCGCCAAGGCGTCGCGCTGGCGCG
GAAGGCAGAACCGCGAGAAGCGCTTCACTTTCGTGCTGGCGGTGGTCATAGGCGTGTTCG
TGGTCTGTTGGTTCCCCTTCTTCTTCACCTATACGCTCACGGCCGTAGGCTGCTCGGTGC
CGCCCACTCTCTTCAAGTTCTTCTTCTGGTTCGGCTACTGCAACAGCTCGCTGAATCCGG
TTATCTACACCATCTTCAATCACGACTTCCGCCGCGCCTTCAAGAAGATCCTCTGCCGTG
GGGACAGGAAACGGATCGTGTGAGCGCTGAGTCCGCTCCCAGCGAACAGACTCCAAGCCG
TCCGCTGGCAGCTGGGATTGAGGGGCGCGTCTATGTAGTCCTTAGCCCTCTGAAACCCGG
GTCCTGCCTATTCCGAGTTTCTTGTCGGGAGGGTTGCTCTGCGGCGTCCTGCCAGCATCT
GCGCTCCCCTACCAGAGAAAAGTACTGGTTGCGAGGGCCCCACGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCGCCGAGCGCAGGCCCAATGGCCTAGGCCCCGAGCGCGGCGTGGGTCGCGTGGGCG
CCGAGGCCGAGCCGCTACCCGTCCAGCTCAACGGTGCCCCGGGGGAGCCCGCGCCCGCTG
GGCCCCGCGACGCTGACGGGCTGGACCTCGAGGAGAGCTCCTCGTCTGAGCACGCCGAGC
GGCCCCCTGGGCCCCGCAGGTCCGAGCGCGGCCCTCGGGCCAAGAGCAAGGCTCGGGCGA
GCCAGGTAAAGCCCGGGGACAGCCTGCCACGGCGCGGGCCGGGGGCGCCCGGGCCGGGGG
CGCCCGCGACTGGGGCCGGGGAGGAGCGCGGCGGGGTCGCCAAGGCGTCGCGCTGGCGCG
GAAGGCAGAACCGCGAGAAGCGCTTCACTTTCGTGCTGGCGGTGGTCATAGGCGTGTTCG
TGGTCTGTTGGTTCCCCTTCTTCTTCACCTATACGCTCACGGCCGTAGGCTGCTCGGTGC
CGCCCACTCTCTTCAAGTTCTTCTTCTGGTTCGGCTACTGCAACAGCTCGCTGAATCCGG
TTATCTACACCATCTTCAATCACGACTTCCGCCGCGCCTTCAAGAAGATCCTCTGCCGTG
GGGACAGGAAACGGATCGTGTGAGCGCTGAGTCCGCTCCCAGCGAACAGACTCCAAGCCG
TCCGCTGGCAGCTGGGATTGAGGGGCGCGTCTATGTAGTCCTTAGCCCTCTGAAACCCGG
GTCCTGCCTATTCCGAGTTTCTTGTCGGGAGGGTTGCTCTGCGGCGTCCTGCCAGCATCT
GCGCTCCCCTACCAGAGAAAAGTACTGGTTGCGAGGGCCCCACGCCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               469-581, - strand, RNAz p=0.725684

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               469-581, - strand, RNAz p=0.725684

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               475-581, - strand, RNAmicro p=0.918955

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               475-581, - strand, RNAmicro p=0.918955

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-826, gnl|bosTau2|chr26 (20177064-20176239)
               

               
               1-826, gnl|Hg17|chr10 (112828520-112829337)
               

               
               1-826, gnl|Mm7|chr19 (53959861-53960665)
               


               
               313-598, gnl|bosTau2|chr11 (1813278-1813571)
               

               
               313-598, gnl|Hg17|chr2 (96202737-96202444)
               

               
               313-598, gnl|Mm7|chr2 (127105461-127105754)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-826, gnl|bosTau2|chr26 (20177064-20176239)
               

               
               1-826, gnl|Hg17|chr10 (112828520-112829337)
               

               
               1-826, gnl|Mm7|chr19 (53959861-53960665)
               


               
               313-598, gnl|bosTau2|chr11 (1813278-1813571)
               

               
               313-598, gnl|Hg17|chr2 (96202737-96202444)
               

               
               313-598, gnl|Mm7|chr2 (127105461-127105754)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	1-826, gnl\|bosTau2\|chr26 (20177064-20176239)
	1-826, gnl\|Hg17\|chr10 (112828520-112829337)
	1-826, gnl\|Mm7\|chr19 (53959861-53960665)

	313-598, gnl\|bosTau2\|chr11 (1813278-1813571)
	313-598, gnl\|Hg17\|chr2 (96202737-96202444)
	313-598, gnl\|Mm7\|chr2 (127105461-127105754)