Non-Coding RNA Search

Ss1.1-Mixc-0034f05.3

Sequence:


               
               CGCGCGTGGCCGTCCGGAGCGGGCTCCCCCCCCCCCCCCACCCTCGACTCCCGCGACCCG
CACCGCACCCCCACTCGGGCCCGGAGGATGATGAAGCTCAAGTCGAACCAGACCCGCACC
TATGACGGCGACGGCTACAAGAAGCGGGCCGCGTGCCTGTGTTTCCGCAGTGAGAGTGAG
GAGGAGGTGCTACTTGTGAGCAGTAGTCGCCATCCAGACCGATGGATTGTCCCTGGAGGA
GGCATGGAGCCCGAGGAGGAGCCAGGTGTGGCGGCAGTCCGTGAAGTCTGTGAGGAGGCT
GGAGTAAAAGGGACATTGGGAAGATTAGTTGGAATTTTTGAGAACCAGGAAAGGAAGCAC
AGAACATATGTCTATGTGCTCATTGTCACGGAAGTGCTGGAAGACTGGGAAGATTCAGTT
AACATCGGAAGGAAGAGGGAATGGTTTAAAATAGAAGATGCCATAAAAGTGTTGCAGTAT
CACAAACCGGTGCATGCGTCGTATTTTGAAACGTTGAGGCAAGGCTACTCATCCAACAAC
GGCACCCCGGTCGTGGCCACCACGTACTCAGTGTCTGCTCATATCTCGATGCCAGGCATT
AGATGACTGAAGACTTCCTGTAAGATAAATGGAAATTGGAAACTAGACTGAAGTGCAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGCGTGGCCGTCCGGAGCGGGCTCCCCCCCCCCCCCCACCCTCGACTCCCGCGACCCG
CACCGCACCCCCACTCGGGCCCGGAGGATGATGAAGCTCAAGTCGAACCAGACCCGCACC
TATGACGGCGACGGCTACAAGAAGCGGGCCGCGTGCCTGTGTTTCCGCAGTGAGAGTGAG
GAGGAGGTGCTACTTGTGAGCAGTAGTCGCCATCCAGACCGATGGATTGTCCCTGGAGGA
GGCATGGAGCCCGAGGAGGAGCCAGGTGTGGCGGCAGTCCGTGAAGTCTGTGAGGAGGCT
GGAGTAAAAGGGACATTGGGAAGATTAGTTGGAATTTTTGAGAACCAGGAAAGGAAGCAC
AGAACATATGTCTATGTGCTCATTGTCACGGAAGTGCTGGAAGACTGGGAAGATTCAGTT
AACATCGGAAGGAAGAGGGAATGGTTTAAAATAGAAGATGCCATAAAAGTGTTGCAGTAT
CACAAACCGGTGCATGCGTCGTATTTTGAAACGTTGAGGCAAGGCTACTCATCCAACAAC
GGCACCCCGGTCGTGGCCACCACGTACTCAGTGTCTGCTCATATCTCGATGCCAGGCATT
AGATGACTGAAGACTTCCTGTAAGATAAATGGAAATTGGAAACTAGACTGAAGTGCAGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               O95989_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               O95989_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               339-455, + strand, RNAz p=0.656724

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               339-455, + strand, RNAz p=0.656724

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               139-542, gnl|bosTau2|chr17 (6863759-6863356)
               

               
               139-542, gnl|Hg17|chr1 (142628546-142628156)
               

               
               139-542, gnl|Mm7|chr16 (13414540-13414189)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-542, gnl|bosTau2|chr17 (6863759-6863356)
               

               
               139-542, gnl|Hg17|chr1 (142628546-142628156)
               

               
               139-542, gnl|Mm7|chr16 (13414540-13414189)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hlv (0.139256)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               ese (0.126502)

	139-542, gnl\|bosTau2\|chr17 (6863759-6863356)
	139-542, gnl\|Hg17\|chr1 (142628546-142628156)
	139-542, gnl\|Mm7\|chr16 (13414540-13414189)