Ss1.1-Mixc-0034f11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCTGCGGCATCCCGGGCTGTGGGCGCTAGGACTAGAGATCTGATTATCATGGACCTGC GACATTTTCTTATGTGCCTGTCCCTGTGCACAGCCTTTGCCTTGAGCAAGCCCACGGAAA AGAAGGACCGCGTACACCATGAGCCTCAGCTCAGTGACAAGGTTCACAATGATGCTCAGA GTTTTGATTATGACCATGATGCCTTCTTGGGTGCTGAAGAAGCAAAAACCTTTGACCAGC TGACACCAGAAGAGAGCAAGGAAAGACTTGGAAAGATTGTAAGTAAAATAGATGGCGACA AAGACGGGTTTGTCACTGTGGATGAGCTCAAAGACTGGATTAAATTTGCACAAAAGCGCT GGATTTACGAGGATGTAGAGCGACAGTGGAAGGGGCATGACCTCAATGAGGACGGCCTCG TTTCCTGGGAGGAGTATAAAAATGCCACCTACGGCTACGTTTTAGATGATCCAGATCCTG ATGATGGATTTAACTATAAACAGATGATGGTTAGAGATGAGCGGAGGTTTAAAATGGCAG ACAAGGATGGAGACCTCATTGCCACAAAGGAGGAATTCACAGCTTTCCTGCACCCTGAGG AGTATGATTACATGAAAGATATAGTAGTGCAGGAAACAATGGAGGATATAGATAAGAATG CTGATGGTTTCATTGATCTAGAAGAGTATATTGGTGACATGTACAGCCACGATGGGAATG CTGATGAACCAGAATGGGTAAAGACCGAGAGAGAACAATTTGTTGAGTTTCGAGATAAGA ACCGTGATGGGAAGATGGATAAGGAAGAGACCAAAGACTGGATTCTCCCCTCGGATTATG ATCATGCAGAGGCAGAAGCCAGGCACCTTGTCTACGAATCAGACCAAAATAAGGACGGCA AGCTTACCAAGGAGGAGATCGTTGACAAGTATGATTTATTTGTGGGCAGCCAGGCCACAG ATTTTGGTGAGGCCTTAGTACGACATGATGAGTTCTGAGCTGCAGACAGAGGAACCCACG TTTCTTCAAAAGTAATTTATTTTTACAGCTTCTGGTTTCACAAGAAATTGTTTGCGCTAC TGAGACTGTTATTACAAACTTTTTAAGACATGGAAAGCTGTACCGAAAATGATCCCGTCC CCATTCCTCCTCCTCTCTGAGGGACTGGAGGGAAACCGTGCTTCTGAGGAACAACTCTAA TTAGTACACTTGCGTTTGTAGATTTACACTTTGTATTATGTATAACATGTGTGTTTATTT TTGTATTTGGTTTCTGGTTGGGAGTATATGAAGGATCAAGATCCTCGGCTCACTTTGTAG ACAAACGTAAGCCCTTCACTCTGTCTCAACCCTTAACATGTAATTTTTATAATTCTGAAT TAATTAATTTGAAGCCTGAGATCAATAAAAAATGTTCAGGAGAGAGAGAAGGGAAGAAAT AGTCCCCACAATTTACAGTTGGAAAGATAACACTTAAGCTCGCCTGTTGAAAAGTCTATT TCAAAGGTAATAGGGGCCGCATATTCTATTTAGTTGCTCCGGGTCCAGGTCCGGGCACTG TCTGGGCAAGGACAGATCCCTGTGCTGTGAGAAAGCTTGGCTCAATTTAATGTCGTTCAT TCTTCTTCTTCTTCCCTTTAGGACTAGCTGTTTGCTAATTTTGTCGGGCACAGCTGTGGT GGGAAGAGTTGAGGCCAGTGTCTTGAAAATCAATCAAGTAGTGAGTGTGATCTCTTCACA GAGTTATACATAGAAACAGCTAGAAAACTGAAGGAAAAGTACAAGCGTTTTCAGGGCACA TGCTTTTTTCTGGGTGTGCATCTGCTGAAGTGCTCAAGACTGTCTTGCCTGTTGAATCAC TGTAAGTGCCCTGGTCAGCTCCTGTTTGCCTGGGTGTCCCGAGGACTGCGTCTTGCTCTC ACTACAGTTAAAATGTACTCCTTTCCAATCATGTCATTGAAAGTGCCTTTAAGGAGAGAA ATGATCATGGAATGAGGATTCTTTTAAGAAACCCCAAGATAAAATAAAGAGATTATTTGG ACCACCTTAAGTGAAAGCTTAGACCCTCCTAGTGTCGTGGGGATTTTTTTCTTCCCTTTT TCTTTTGGATGGTGGTTAAATAGCAGTATTAATTAGGGGCTTGGTTGCAGTGTTCTTATC TTGTGGGCTGGTTTCCAAAAACCACATGCTGCTGAATTTACCAGGGATCCTCATACCTCA GAATGCTAACCACTTACTACTAGGCCTGTTTCTGTGTCAGCTGGAGAACTTGAGCTAAGA CGCGAAGATGAGAGGGTTCTTGGGTTTGAGGACCATCGCTCACCCTTCCTGCCTTTGACC CCTCCCTCCCTATGTCCCCATCTCCTCTTCTCCTTGCTGCCAAAAAAAAGAAAGTTTATC ATGGATCAGCATAGCCAATGCTTATCAAAGAGGAACATTGTAGAAAGAGCTGAAGACATC ACCCTCTGTTCCCACCTCACTTTACCTGTACTTTACGTAACAGGACACTCTTTTTGGTCC CTTTCATACCGATGGACTTCTTTTGAGAAGAATTATTATACTCTAAGTTTTTAGCCCTCA GGTTACTAAGATGAATATATATGTATATCTAACCTTTATTACTGCATATATCTTTCTGGA TAATACATTCAGGTGGTGCTGGGCGATTATTATAATCTGAACCTAGGCGTATCCTCTGGT CTTCCTCCATCGTGTTGAGGTGGGTTACTTGGCCTGGTAAAAAGCCGGATATCATGTAAC CTCATCCTGGCCTTTGCATTGAACTCTGGAGAGTGGATTCACTCCTTTAACCCCAATGTG AGGGAACGGAAATTCTCTGCATTCCAGATTCCCCGTTTTTATTGTTCAGAAGACCAGGGG TAATTAATAGTGCCACCAACCCTGGCTTGGAGAGGGCACGTTACGAATTGTGTGGCAGGA GAGCCTCGCAGGTCACCAGGTGCAGAGAACCCGGGCCTTGATTGCTAAAGTCACGCACTT AGAGAGCAAGCCTTCGTCCGCCAAGGCAGCAACTTCTGGATGCTGGGCGCTCGTCAGGAA GCATTGTACTCTAATCTCTAATGATCCCCCTGGGGTTTTTTTGTTTTTTGGTTTTTTTTG TTTGTTCATTTGTTTAAATCAAGCCTGAAGCTGGTGAACAGTAGCTGCACACCTAGATTG TGTGTTCTGTGAATGCTAGCTCTCTTGAATTTGGATACTGGTTATTTTTTATAGAGTGTA AACCCAGTTTTATATTCTATAATGCAAACAGGTACCTATCTGTTTCTAAATAAAACTGTT TACATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCTGCGGCATCCCGGGCTGTGGGCGCTAGGACTAGAGATCTGATTATCATGGACCTGC GACATTTTCTTATGTGCCTGTCCCTGTGCACAGCCTTTGCCTTGAGCAAGCCCACGGAAA AGAAGGACCGCGTACACCATGAGCCTCAGCTCAGTGACAAGGTTCACAATGATGCTCAGA GTTTTGATTATGACCATGATGCCTTCTTGGGTGCTGAAGAAGCAAAAACCTTTGACCAGC TGACACCAGAAGAGAGCAAGGAAAGACTTGGAAAGATTGTAAGTAAAATAGATGGCGACA AAGACGGGTTTGTCACTGTGGATGAGCTCAAAGACTGGATTAAATTTGCACAAAAGCGCT GGATTTACGAGGATGTAGAGCGACAGTGGAAGGGGCATGACCTCAATGAGGACGGCCTCG TTTCCTGGGAGGAGTATAAAAATGCCACCTACGGCTACGTTTTAGATGATCCAGATCCTG ATGATGGATTTAACTATAAACAGATGATGGTTAGAGATGAGCGGAGGTTTAAAATGGCAG ACAAGGATGGAGACCTCATTGCCACAAAGGAGGAATTCACAGCTTTCCTGCACCCTGAGG AGTATGATTACATGAAAGATATAGTAGTGCAGGAAACAATGGAGGATATAGATAAGAATG CTGATGGTTTCATTGATCTAGAAGAGTATATTGGTGACATGTACAGCCACGATGGGAATG CTGATGAACCAGAATGGGTAAAGACCGAGAGAGAACAATTTGTTGAGTTTCGAGATAAGA ACCGTGATGGGAAGATGGATAAGGAAGAGACCAAAGACTGGATTCTCCCCTCGGATTATG ATCATGCAGAGGCAGAAGCCAGGCACCTTGTCTACGAATCAGACCAAAATAAGGACGGCA AGCTTACCAAGGAGGAGATCGTTGACAAGTATGATTTATTTGTGGGCAGCCAGGCCACAG ATTTTGGTGAGGCCTTAGTACGACATGATGAGTTCTGAGCTGCAGACAGAGGAACCCACG TTTCTTCAAAAGTAATTTATTTTTACAGCTTCTGGTTTCACAAGAAATTGTTTGCGCTAC TGAGACTGTTATTACAAACTTTTTAAGACATGGAAAGCTGTACCGAAAATGATCCCGTCC CCATTCCTCCTCCTCTCTGAGGGACTGGAGGGAAACCGTGCTTCTGAGGAACAACTCTAA TTAGTACACTTGCGTTTGTAGATTTACACTTTGTATTATGTATAACATGTGTGTTTATTT TTGTATTTGGTTTCTGGTTGGGAGTATATGAAGGATCAAGATCCTCGGCTCACTTTGTAG ACAAACGTAAGCCCTTCACTCTGTCTCAACCCTTAACATGTAATTTTTATAATTCTGAAT TAATTAATTTGAAGCCTGAGATCAATAAAAAATGTTCAGGAGAGAGAGAAGGGAAGAAAT AGTCCCCACAATTTACAGTTGGAAAGATAACACTTAAGCTCGCCTGTTGAAAAGTCTATT TCAAAGGTAATAGGGGCCGCATATTCTATTTAGTTGCTCCGGGTCCAGGTCCGGGCACTG TCTGGGCAAGGACAGATCCCTGTGCTGTGAGAAAGCTTGGCTCAATTTAATGTCGTTCAT TCTTCTTCTTCTTCCCTTTAGGACTAGCTGTTTGCTAATTTTGTCGGGCACAGCTGTGGT GGGAAGAGTTGAGGCCAGTGTCTTGAAAATCAATCAAGTAGTGAGTGTGATCTCTTCACA GAGTTATACATAGAAACAGCTAGAAAACTGAAGGAAAAGTACAAGCGTTTTCAGGGCACA TGCTTTTTTCTGGGTGTGCATCTGCTGAAGTGCTCAAGACTGTCTTGCCTGTTGAATCAC TGTAAGTGCCCTGGTCAGCTCCTGTTTGCCTGGGTGTCCCGAGGACTGCGTCTTGCTCTC ACTACAGTTAAAATGTACTCCTTTCCAATCATGTCATTGAAAGTGCCTTTAAGGAGAGAA ATGATCATGGAATGAGGATTCTTTTAAGAAACCCCAAGATAAAATAAAGAGATTATTTGG ACCACCTTAAGTGAAAGCTTAGACCCTCCTAGTGTCGTGGGGATTTTTTTCTTCCCTTTT TCTTTTGGATGGTGGTTAAATAGCAGTATTAATTAGGGGCTTGGTTGCAGTGTTCTTATC TTGTGGGCTGGTTTCCAAAAACCACATGCTGCTGAATTTACCAGGGATCCTCATACCTCA GAATGCTAACCACTTACTACTAGGCCTGTTTCTGTGTCAGCTGGAGAACTTGAGCTAAGA CGCGAAGATGAGAGGGTTCTTGGGTTTGAGGACCATCGCTCACCCTTCCTGCCTTTGACC CCTCCCTCCCTATGTCCCCATCTCCTCTTCTCCTTGCTGCCAAAAAAAAGAAAGTTTATC ATGGATCAGCATAGCCAATGCTTATCAAAGAGGAACATTGTAGAAAGAGCTGAAGACATC ACCCTCTGTTCCCACCTCACTTTACCTGTACTTTACGTAACAGGACACTCTTTTTGGTCC CTTTCATACCGATGGACTTCTTTTGAGAAGAATTATTATACTCTAAGTTTTTAGCCCTCA GGTTACTAAGATGAATATATATGTATATCTAACCTTTATTACTGCATATATCTTTCTGGA TAATACATTCAGGTGGTGCTGGGCGATTATTATAATCTGAACCTAGGCGTATCCTCTGGT CTTCCTCCATCGTGTTGAGGTGGGTTACTTGGCCTGGTAAAAAGCCGGATATCATGTAAC CTCATCCTGGCCTTTGCATTGAACTCTGGAGAGTGGATTCACTCCTTTAACCCCAATGTG AGGGAACGGAAATTCTCTGCATTCCAGATTCCCCGTTTTTATTGTTCAGAAGACCAGGGG TAATTAATAGTGCCACCAACCCTGGCTTGGAGAGGGCACGTTACGAATTGTGTGGCAGGA GAGCCTCGCAGGTCACCAGGTGCAGAGAACCCGGGCCTTGATTGCTAAAGTCACGCACTT AGAGAGCAAGCCTTCGTCCGCCAAGGCAGCAACTTCTGGATGCTGGGCGCTCGTCAGGAA GCATTGTACTCTAATCTCTAATGATCCCCCTGGGGTTTTTTTGTTTTTTGGTTTTTTTTG TTTGTTCATTTGTTTAAATCAAGCCTGAAGCTGGTGAACAGTAGCTGCACACCTAGATTG TGTGTTCTGTGAATGCTAGCTCTCTTGAATTTGGATACTGGTTATTTTTTATAGAGTGTA AACCCAGTTTTATATTCTATAATGCAAACAGGTACCTATCTGTTTCTAAATAAAACTGTT TACATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1205-1392, - strand, RNAz p=0.908652 | |
| 3191-3308, + strand, RNAz p=0.947676 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1205-1392, - strand, RNAz p=0.908652 | |
| 3191-3308, + strand, RNAz p=0.947676 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_001219, + |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 38-271, gnl|bosTau2|chr4 (50576733-50576500) | |
| 38-271, gnl|canFam2|chr1 (109868891-109869103) | |
| 38-271, gnl|canFam2|chr14 (10845969-10846132) | |
| 38-271, gnl|danRer3|chr25 (4087736-4087915) | |
| 38-271, gnl|danRer3|chr25 (4087736-4087934) | |
| 38-271, gnl|dasNov1|scaffold_111127 (3594-3391) | |
| 38-271, gnl|dasNov1|scaffold_111127 (3594-3394) | |
| 38-271, gnl|echTel1|scaffold_135694 (234-398) | |
| 38-271, gnl|echTel1|scaffold_318082 (4911-5111) | |
| 38-271, gnl|fr1|chrUn (79890816-79890614) | |
| 38-271, gnl|fr1|chrUn (79890816-79890614) | |
| 38-271, gnl|galGal2|chr3 (43196105-43196271) | |
| 38-271, gnl|galGal2|chr3 (43196105-43196271) | |
| 38-271, gnl|hg17|chr13 (44863232-44863435) | |
| 38-271, gnl|hg17|chr6 (87888863-87889062) | |
| 38-271, gnl|Hg17|chr7 (127982576-127982809) | |
| 38-271, gnl|loxAfr1|scaffold_189506 (496-699) | |
| 38-271, gnl|loxAfr1|scaffold_189506 (496-696) | |
| 38-271, gnl|mm7|chr2 (105249759-105249953) | |
| 38-271, gnl|mm7|chr2 (105249759-105249950) | |
| 38-271, gnl|Mm7|chr6 (29288611-29288843) | |
| 38-271, gnl|monDom2|scaffold_10 (78278743-78278543) | |
| 38-271, gnl|monDom2|scaffold_10 (78278743-78278543) | |
| 38-271, gnl|oryCun1|scaffold_100290 (1258-1476) | |
| 38-271, gnl|oryCun1|scaffold_100290 (1258-1473) | |
| 38-271, gnl|panTro1|chr14 (44584101-44584304) | |
| 38-271, gnl|panTro1|chr14 (44584101-44584301) | |
| 38-271, gnl|rheMac2|chr4 (83083806-83084008) | |
| 38-271, gnl|rheMac2|chr4 (83083806-83084005) | |
| 38-271, gnl|rn3|chr3 (90742138-90742332) | |
| 38-271, gnl|rn3|chr3 (90742138-90742329) | |
| 38-271, gnl|tetNig1|chr5 (4236019-4235848) | |
| 38-271, gnl|tetNig1|chr5 (4236019-4235848) | |
| 38-271, gnl|xenTro1|scaffold_624 (354056-354250) | |
| 38-271, gnl|xenTro1|scaffold_624 (354056-354247) | |
| 420-633, gnl|bosTau2|chr4 (50567563-50567349) | |
| 420-633, gnl|Hg17|chr7 (127992829-127993043) | |
| 420-633, gnl|Mm7|chr6 (29298137-29298353) | |
| 892-3308, gnl|bosTau2|chr4 (50563431-50561054) | |
| 892-3308, gnl|Hg17|chr7 (128003066-128005479) | |
| 892-3308, gnl|Mm7|chr6 (29306543-29308814) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 38-271, gnl|bosTau2|chr4 (50576733-50576500) | |
| 38-271, gnl|canFam2|chr1 (109868891-109869103) | |
| 38-271, gnl|canFam2|chr14 (10845969-10846132) | |
| 38-271, gnl|danRer3|chr25 (4087736-4087915) | |
| 38-271, gnl|danRer3|chr25 (4087736-4087934) | |
| 38-271, gnl|dasNov1|scaffold_111127 (3594-3391) | |
| 38-271, gnl|dasNov1|scaffold_111127 (3594-3394) | |
| 38-271, gnl|echTel1|scaffold_135694 (234-398) | |
| 38-271, gnl|echTel1|scaffold_318082 (4911-5111) | |
| 38-271, gnl|fr1|chrUn (79890816-79890614) | |
| 38-271, gnl|fr1|chrUn (79890816-79890614) | |
| 38-271, gnl|galGal2|chr3 (43196105-43196271) | |
| 38-271, gnl|galGal2|chr3 (43196105-43196271) | |
| 38-271, gnl|hg17|chr13 (44863232-44863435) | |
| 38-271, gnl|hg17|chr6 (87888863-87889062) | |
| 38-271, gnl|Hg17|chr7 (127982576-127982809) | |
| 38-271, gnl|loxAfr1|scaffold_189506 (496-699) | |
| 38-271, gnl|loxAfr1|scaffold_189506 (496-696) | |
| 38-271, gnl|mm7|chr2 (105249759-105249953) | |
| 38-271, gnl|mm7|chr2 (105249759-105249950) | |
| 38-271, gnl|Mm7|chr6 (29288611-29288843) | |
| 38-271, gnl|monDom2|scaffold_10 (78278743-78278543) | |
| 38-271, gnl|monDom2|scaffold_10 (78278743-78278543) | |
| 38-271, gnl|oryCun1|scaffold_100290 (1258-1476) | |
| 38-271, gnl|oryCun1|scaffold_100290 (1258-1473) | |
| 38-271, gnl|panTro1|chr14 (44584101-44584304) | |
| 38-271, gnl|panTro1|chr14 (44584101-44584301) | |
| 38-271, gnl|rheMac2|chr4 (83083806-83084008) | |
| 38-271, gnl|rheMac2|chr4 (83083806-83084005) | |
| 38-271, gnl|rn3|chr3 (90742138-90742332) | |
| 38-271, gnl|rn3|chr3 (90742138-90742329) | |
| 38-271, gnl|tetNig1|chr5 (4236019-4235848) | |
| 38-271, gnl|tetNig1|chr5 (4236019-4235848) | |
| 38-271, gnl|xenTro1|scaffold_624 (354056-354250) | |
| 38-271, gnl|xenTro1|scaffold_624 (354056-354247) | |
| 420-633, gnl|bosTau2|chr4 (50567563-50567349) | |
| 420-633, gnl|Hg17|chr7 (127992829-127993043) | |
| 420-633, gnl|Mm7|chr6 (29298137-29298353) | |
| 892-3308, gnl|bosTau2|chr4 (50563431-50561054) | |
| 892-3308, gnl|Hg17|chr7 (128003066-128005479) | |
| 892-3308, gnl|Mm7|chr6 (29306543-29308814) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| eye (0.682012) | |
| pro (0.512033) | |
| pla (0.401016) | |
| liv (0.292569) | |
| nca (0.273748) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| sug (0.254582) | |
| mgp (0.230681) | |
| jca (0.22792) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| ski (0.146735) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.682012) | |
| pro (0.512033) | |
| pla (0.401016) | |
| liv (0.292569) | |
| nca (0.273748) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| sug (0.254582) | |
| mgp (0.230681) | |
| jca (0.22792) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| ski (0.146735) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| eje (0.0988338) |