Non-Coding RNA Search

Ss1.1-Mixc-0034i24.5

Sequence:


               
               GCATCGTCAGTGTTCAGCTGGTTATCCGGGTTAAGCTCTGTCTGTGGCAAAGGACTGACC
ATTAAGGTTACTTTGCTTTGTGAAGAAAAGATAAATCCAGTTTTCACAGGGTTTGTGGAT
CTGGTGCCCTGACTGAAACCAAAGTCATCAAGTAATTGGAGAGTCTGAGTTAGCTTGACT
GGACTTCTCCCAATCCCTTGAGCCTTCCTTGTTGGCTACCAGGCTCACTTGTGAGCCCTC
CAGTTTTCAAGATGGAGTCTAAATAAGACCGAATGGAAAAGGGGCAGTTAAGTGAATGAC
CTTTTATACTACATAAAGCCCTTAATACAGATCAAATACATTTGATCTTGAGAGGCGTGG
CGGTCTCAGATGCATAGGTGGAGAAGCACATTTTACCTTGTAGTGTGAGGTTTCCTTACC
AAAATCGTAAATGGAATAAAGCCTACTCGATGAGAAAAGGACTCAGTCATCTAGCCCTGT
ATCACATCAGTCCTCTATATAAACCTAATTTAATCCTAACAGCCTTATAGAAAGGAGATC
TCTATAGCAGAGGACTAGCTTTATCCAGGTATAATCTTCCTCCCTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATCGTCAGTGTTCAGCTGGTTATCCGGGTTAAGCTCTGTCTGTGGCAAAGGACTGACC
ATTAAGGTTACTTTGCTTTGTGAAGAAAAGATAAATCCAGTTTTCACAGGGTTTGTGGAT
CTGGTGCCCTGACTGAAACCAAAGTCATCAAGTAATTGGAGAGTCTGAGTTAGCTTGACT
GGACTTCTCCCAATCCCTTGAGCCTTCCTTGTTGGCTACCAGGCTCACTTGTGAGCCCTC
CAGTTTTCAAGATGGAGTCTAAATAAGACCGAATGGAAAAGGGGCAGTTAAGTGAATGAC
CTTTTATACTACATAAAGCCCTTAATACAGATCAAATACATTTGATCTTGAGAGGCGTGG
CGGTCTCAGATGCATAGGTGGAGAAGCACATTTTACCTTGTAGTGTGAGGTTTCCTTACC
AAAATCGTAAATGGAATAAAGCCTACTCGATGAGAAAAGGACTCAGTCATCTAGCCCTGT
ATCACATCAGTCCTCTATATAAACCTAATTTAATCCTAACAGCCTTATAGAAAGGAGATC
TCTATAGCAGAGGACTAGCTTTATCCAGGTATAATCTTCCTCCCTTGG

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-280, gnl|bosTau2|chr19 (15725545-15725255)
               

               
               1-280, gnl|canFam2|chr9 (47548587-47549011)
               

               
               1-280, gnl|echTel1|scaffold_179001 (449-864)
               

               
               1-280, gnl|hg17|chr17 (25548206-25548612)
               

               
               1-280, gnl|Hg17|chr17 (25548654-25548364)
               

               
               1-280, gnl|loxAfr1|scaffold_41110 (9813-9383)
               

               
               1-280, gnl|mm7|chr11 (77114491-77114120)
               

               
               1-280, gnl|Mm7|chr11 (77114085-77114363)
               

               
               1-280, gnl|oryCun1|scaffold_165773 (575-174)
               

               
               1-280, gnl|panTro1|chr19 (28911601-28912007)
               

               
               1-280, gnl|rheMac2|chr16 (25434467-25434873)
               


               
               308-588, gnl|bosTau2|chr19 (15725255-15724976)
               

               
               308-588, gnl|Hg17|chr17 (25548364-25548056)
               

               
               308-588, gnl|Mm7|chr11 (77114363-77114769)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-280, gnl|bosTau2|chr19 (15725545-15725255)
               

               
               1-280, gnl|canFam2|chr9 (47548587-47549011)
               

               
               1-280, gnl|echTel1|scaffold_179001 (449-864)
               

               
               1-280, gnl|hg17|chr17 (25548206-25548612)
               

               
               1-280, gnl|Hg17|chr17 (25548654-25548364)
               

               
               1-280, gnl|loxAfr1|scaffold_41110 (9813-9383)
               

               
               1-280, gnl|mm7|chr11 (77114491-77114120)
               

               
               1-280, gnl|Mm7|chr11 (77114085-77114363)
               

               
               1-280, gnl|oryCun1|scaffold_165773 (575-174)
               

               
               1-280, gnl|panTro1|chr19 (28911601-28912007)
               

               
               1-280, gnl|rheMac2|chr16 (25434467-25434873)
               


               
               308-588, gnl|bosTau2|chr19 (15725255-15724976)
               

               
               308-588, gnl|Hg17|chr17 (25548364-25548056)
               

               
               308-588, gnl|Mm7|chr11 (77114363-77114769)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               sin (0.349895)
               

               
               clu (0.239292)
               

               
               cag (0.151194)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               clu (0.239292)
               

               
               cag (0.151194)

	1-280, gnl\|bosTau2\|chr19 (15725545-15725255)
	1-280, gnl\|canFam2\|chr9 (47548587-47549011)
	1-280, gnl\|echTel1\|scaffold_179001 (449-864)
	1-280, gnl\|hg17\|chr17 (25548206-25548612)
	1-280, gnl\|Hg17\|chr17 (25548654-25548364)
	1-280, gnl\|loxAfr1\|scaffold_41110 (9813-9383)
	1-280, gnl\|mm7\|chr11 (77114491-77114120)
	1-280, gnl\|Mm7\|chr11 (77114085-77114363)
	1-280, gnl\|oryCun1\|scaffold_165773 (575-174)
	1-280, gnl\|panTro1\|chr19 (28911601-28912007)
	1-280, gnl\|rheMac2\|chr16 (25434467-25434873)

	308-588, gnl\|bosTau2\|chr19 (15725255-15724976)
	308-588, gnl\|Hg17\|chr17 (25548364-25548056)
	308-588, gnl\|Mm7\|chr11 (77114363-77114769)