Non-Coding RNA Search

Ss1.1-Mixc-0034j14.3

Sequence:


               
               CCCAAGAAGAGCTGGCACGTCCGGAACAAGGACAATGTGGCCCGCGTGCGGCGTGACGAG
GCCCAAGCCCGGGAGGAAGAGAAAGAGCGTGAGCGGAGGGTGCTTCTCGCTCAGCAAGAG
GCCCGCACGGAATTCCTGCGGAAGAAAGCTAGGCATCAGAACTCACTGCCTGCGCTTGAA
GCAGCAGAAGCAGGAGCCCCAAGGTCTGGCCCTGTGGATCTGTTTCGGGAGCTGCTAGAG
GAAGGGAAAGGCTTGAGCAGAGGCAATAAAGAGTACGAAGAAGAGAAGCGACAAGAGAAA
GAGAGGCAAGAGAAAGCTCTGGGCATCTTGACATACCTGGGCCAGAGTGCAGCAGAAGCC
CAGACCCAGCCCCCTTGGTACCAGCTCCCCCCAGGGCAGGGGACCCCATCGCCTGGTGCC
GGACGAGATGAGAAGATCAAGAACCGCCTGGACCCTCTGCGGGAGATGCAGAAGCACTTG
GGGAAGAAGAGAAAGCAGAGTCGTGACGACAGCAGTCACAGCGGAAAGGAGAAGGAGCCT
CCTGTGAAACAATGGCCCACAGAACCCCCATCCCTGGACCGGCTTCGAGCTGAACGTCTC
CGGCGTGAAGCAGCTGAGAGGGCGCGGGCAGAGGCCCTGCTGGCCCGGGTCAGAGGCACA
GCAGCCCAGGAGCATCGGCCGGAAGAAGGGGTGGATGAGCGGCAGAGGCGGTACAACTCC
CAGTTCAACCCCCAGCTGGCCCGGCGCCCCCGCAGGCAGGAACTCCCCCCTGCTCACTGA
CTGAGGGGGTAGAGGAGAGGCCGCTGCTGCCAGCCGTCATATAAAACTATTTATTCATAA
ATATTTTCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAAGAAGAGCTGGCACGTCCGGAACAAGGACAATGTGGCCCGCGTGCGGCGTGACGAG
GCCCAAGCCCGGGAGGAAGAGAAAGAGCGTGAGCGGAGGGTGCTTCTCGCTCAGCAAGAG
GCCCGCACGGAATTCCTGCGGAAGAAAGCTAGGCATCAGAACTCACTGCCTGCGCTTGAA
GCAGCAGAAGCAGGAGCCCCAAGGTCTGGCCCTGTGGATCTGTTTCGGGAGCTGCTAGAG
GAAGGGAAAGGCTTGAGCAGAGGCAATAAAGAGTACGAAGAAGAGAAGCGACAAGAGAAA
GAGAGGCAAGAGAAAGCTCTGGGCATCTTGACATACCTGGGCCAGAGTGCAGCAGAAGCC
CAGACCCAGCCCCCTTGGTACCAGCTCCCCCCAGGGCAGGGGACCCCATCGCCTGGTGCC
GGACGAGATGAGAAGATCAAGAACCGCCTGGACCCTCTGCGGGAGATGCAGAAGCACTTG
GGGAAGAAGAGAAAGCAGAGTCGTGACGACAGCAGTCACAGCGGAAAGGAGAAGGAGCCT
CCTGTGAAACAATGGCCCACAGAACCCCCATCCCTGGACCGGCTTCGAGCTGAACGTCTC
CGGCGTGAAGCAGCTGAGAGGGCGCGGGCAGAGGCCCTGCTGGCCCGGGTCAGAGGCACA
GCAGCCCAGGAGCATCGGCCGGAAGAAGGGGTGGATGAGCGGCAGAGGCGGTACAACTCC
CAGTTCAACCCCCAGCTGGCCCGGCGCCCCCGCAGGCAGGAACTCCCCCCTGCTCACTGA
CTGAGGGGGTAGAGGAGAGGCCGCTGCTGCCAGCCGTCATATAAAACTATTTATTCATAA
ATATTTTCCAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96BZ8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96BZ8_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               119-275, + strand, RNAz p=0.697874
               

               
               722-837, - strand, RNAz p=0.649438

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-275, + strand, RNAz p=0.697874
               

               
               722-837, - strand, RNAz p=0.649438

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               119-299, gnl|bosTau2|chr18 (56102919-56102736)
               

               
               119-299, gnl|canFam2|chr1 (106131403-106131185)
               

               
               119-299, gnl|danRer3|chr16 (43437793-43437551)
               

               
               119-299, gnl|dasNov1|scaffold_66014 (799-586)
               

               
               119-299, gnl|echTel1|scaffold_284539 (41637-41823)
               

               
               119-299, gnl|hg17|chr19 (59353803-59354016)
               

               
               119-299, gnl|Hg17|chr19 (59354013-59353833)
               

               
               119-299, gnl|loxAfr1|scaffold_55084 (7512-7308)
               

               
               119-299, gnl|mm7|chr7 (3286617-3286825)
               

               
               119-299, gnl|Mm7|chr7 (3286822-3286642)
               

               
               119-299, gnl|monDom2|scaffold_191 (1309919-1309719)
               

               
               119-299, gnl|panTro1|chr20 (56797257-56797470)
               

               
               119-299, gnl|rheMac2|chr19 (60259695-60259908)
               

               
               119-299, gnl|rn3|chr1 (63943268-63943060)
               

               
               119-299, gnl|xenTro1|scaffold_374 (195274-195487)
               


               
               301-562, gnl|bosTau2|chr18 (56102127-56101866)
               

               
               301-562, gnl|Hg17|chr19 (59352575-59352314)
               

               
               301-562, gnl|Mm7|chr7 (3285983-3285731)
               


               
               565-852, gnl|bosTau2|chr18 (56101338-56101051)
               

               
               565-852, gnl|Hg17|chr19 (59351489-59351196)
               

               
               565-852, gnl|Mm7|chr7 (3284318-3284024)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               119-299, gnl|bosTau2|chr18 (56102919-56102736)
               

               
               119-299, gnl|canFam2|chr1 (106131403-106131185)
               

               
               119-299, gnl|danRer3|chr16 (43437793-43437551)
               

               
               119-299, gnl|dasNov1|scaffold_66014 (799-586)
               

               
               119-299, gnl|echTel1|scaffold_284539 (41637-41823)
               

               
               119-299, gnl|hg17|chr19 (59353803-59354016)
               

               
               119-299, gnl|Hg17|chr19 (59354013-59353833)
               

               
               119-299, gnl|loxAfr1|scaffold_55084 (7512-7308)
               

               
               119-299, gnl|mm7|chr7 (3286617-3286825)
               

               
               119-299, gnl|Mm7|chr7 (3286822-3286642)
               

               
               119-299, gnl|monDom2|scaffold_191 (1309919-1309719)
               

               
               119-299, gnl|panTro1|chr20 (56797257-56797470)
               

               
               119-299, gnl|rheMac2|chr19 (60259695-60259908)
               

               
               119-299, gnl|rn3|chr1 (63943268-63943060)
               

               
               119-299, gnl|xenTro1|scaffold_374 (195274-195487)
               


               
               301-562, gnl|bosTau2|chr18 (56102127-56101866)
               

               
               301-562, gnl|Hg17|chr19 (59352575-59352314)
               

               
               301-562, gnl|Mm7|chr7 (3285983-3285731)
               


               
               565-852, gnl|bosTau2|chr18 (56101338-56101051)
               

               
               565-852, gnl|Hg17|chr19 (59351489-59351196)
               

               
               565-852, gnl|Mm7|chr7 (3284318-3284024)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)

	119-275, + strand, RNAz p=0.697874
	722-837, - strand, RNAz p=0.649438

	119-299, gnl\|bosTau2\|chr18 (56102919-56102736)
	119-299, gnl\|canFam2\|chr1 (106131403-106131185)
	119-299, gnl\|danRer3\|chr16 (43437793-43437551)
	119-299, gnl\|dasNov1\|scaffold_66014 (799-586)
	119-299, gnl\|echTel1\|scaffold_284539 (41637-41823)
	119-299, gnl\|hg17\|chr19 (59353803-59354016)
	119-299, gnl\|Hg17\|chr19 (59354013-59353833)
	119-299, gnl\|loxAfr1\|scaffold_55084 (7512-7308)
	119-299, gnl\|mm7\|chr7 (3286617-3286825)
	119-299, gnl\|Mm7\|chr7 (3286822-3286642)
	119-299, gnl\|monDom2\|scaffold_191 (1309919-1309719)
	119-299, gnl\|panTro1\|chr20 (56797257-56797470)
	119-299, gnl\|rheMac2\|chr19 (60259695-60259908)
	119-299, gnl\|rn3\|chr1 (63943268-63943060)
	119-299, gnl\|xenTro1\|scaffold_374 (195274-195487)

	301-562, gnl\|bosTau2\|chr18 (56102127-56101866)
	301-562, gnl\|Hg17\|chr19 (59352575-59352314)
	301-562, gnl\|Mm7\|chr7 (3285983-3285731)

	565-852, gnl\|bosTau2\|chr18 (56101338-56101051)
	565-852, gnl\|Hg17\|chr19 (59351489-59351196)
	565-852, gnl\|Mm7\|chr7 (3284318-3284024)