Non-Coding RNA Search

Ss1.1-Mixc-0034k05.3

Sequence:


               
               AAGGCACGGTGTTACCTCCAGGGCCCACCTGGTCTTGGGAAAGTGAGCTGCAGACTGGGA
GAGCTCAGGTCTGGCCTGAAGCTTCCCTTGTAGTGAAGCCTCTGCAGTCAGTTTTGACAC
CTCCTTTGACCTCTCTACTGGGTCTCATCAGGGCCCTAATGATGGGTGAAATGACCCAGA
ATCCCACTGGCCCATTAGGTTCAGTCCCTTTCGACTGAGGGCTCAGCAAGACCAAGTGAG
CAGAGGTTTGAGGGATGAGGGGCCTGTTTTATCTACAGAAGAGTCAGGATCACATCTAGT
GTGCCCCATAAATCCCAGGCCAAGCAGAGGGCAGCCTAGATGCTGTACCAGCTGCTTTGG
ATATCATTGCCCAAAGGGGAGTGCCTTGAATAGCCAGCCTCCAATGCCCACAGATCCAGG
CCTAGTTGAGTTGGAGTATAGATTTAGAGCTGTAAAAGAACGCAATCTGAGTTTGAGTGA
TTCAGGTTCTAGGATTTCTCACCTCTGAGACCTCTGCAAGGCATCTCTAGGCCTCTTCCT
AGTCCTTCCCTTACCACACACCCACCCACCCCTTCACATTATCTTCAAATCCCAAGAAAT
CTCTAATACTGAGGCAGTTTCTGCTCCTCAGTTTGGGGAACAGGACTTGCCTAATACAAA
TCTGGCCCTTTAGCCCTGAGGCCTTGGTGGTGTAAAACTGGTAGCAGGGTAGCAACCACA
GGCTAGGACCAATCCAAGGACTTGGGCTGGTGTCCTGTAGGGGTTTTAGGATTGGTGAGG
GCACCACAGCTTTGCTTGACCTTGAACACCACCTCCCTCCCTCCTGCACTCTGGATGGAA
GCCAAGGACTTAACTCAGACCCCCACTTGTTGCCTGGCTACCCTGGGCACAGAGCTGGAT
GGTGTGCTGTTTGGAAAGACAGCATACTCAGGAGATTTCAGTGAGACGGATTTCTAGGCT
GCTGTGTTATTTGGGGGGTGGAGGAGGTTGGGGAGAGGCAGAAACCTGCTGCCTCTTAAA
CCACCCTGTATAAAATCGGCAATACAGCTTCTTCCATGTACCTGTGCCTGAAATGTCTGC
AATAAAGAGGTGTTTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGCACGGTGTTACCTCCAGGGCCCACCTGGTCTTGGGAAAGTGAGCTGCAGACTGGGA
GAGCTCAGGTCTGGCCTGAAGCTTCCCTTGTAGTGAAGCCTCTGCAGTCAGTTTTGACAC
CTCCTTTGACCTCTCTACTGGGTCTCATCAGGGCCCTAATGATGGGTGAAATGACCCAGA
ATCCCACTGGCCCATTAGGTTCAGTCCCTTTCGACTGAGGGCTCAGCAAGACCAAGTGAG
CAGAGGTTTGAGGGATGAGGGGCCTGTTTTATCTACAGAAGAGTCAGGATCACATCTAGT
GTGCCCCATAAATCCCAGGCCAAGCAGAGGGCAGCCTAGATGCTGTACCAGCTGCTTTGG
ATATCATTGCCCAAAGGGGAGTGCCTTGAATAGCCAGCCTCCAATGCCCACAGATCCAGG
CCTAGTTGAGTTGGAGTATAGATTTAGAGCTGTAAAAGAACGCAATCTGAGTTTGAGTGA
TTCAGGTTCTAGGATTTCTCACCTCTGAGACCTCTGCAAGGCATCTCTAGGCCTCTTCCT
AGTCCTTCCCTTACCACACACCCACCCACCCCTTCACATTATCTTCAAATCCCAAGAAAT
CTCTAATACTGAGGCAGTTTCTGCTCCTCAGTTTGGGGAACAGGACTTGCCTAATACAAA
TCTGGCCCTTTAGCCCTGAGGCCTTGGTGGTGTAAAACTGGTAGCAGGGTAGCAACCACA
GGCTAGGACCAATCCAAGGACTTGGGCTGGTGTCCTGTAGGGGTTTTAGGATTGGTGAGG
GCACCACAGCTTTGCTTGACCTTGAACACCACCTCCCTCCCTCCTGCACTCTGGATGGAA
GCCAAGGACTTAACTCAGACCCCCACTTGTTGCCTGGCTACCCTGGGCACAGAGCTGGAT
GGTGTGCTGTTTGGAAAGACAGCATACTCAGGAGATTTCAGTGAGACGGATTTCTAGGCT
GCTGTGTTATTTGGGGGGTGGAGGAGGTTGGGGAGAGGCAGAAACCTGCTGCCTCTTAAA
CCACCCTGTATAAAATCGGCAATACAGCTTCTTCCATGTACCTGTGCCTGAAATGTCTGC
AATAAAGAGGTGTTTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               465-811, + strand, RNAz p=0.998925

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               465-811, + strand, RNAz p=0.998925

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               25-187, gnl|bosTau2|chr18 (14988493-14988336)
               

               
               25-187, gnl|Hg17|chr16 (66462900-66463066)
               


               
               188-916, gnl|bosTau2|chr18 (14988309-14987589)
               

               
               188-916, gnl|Hg17|chr16 (66463092-66463790)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-187, gnl|bosTau2|chr18 (14988493-14988336)
               

               
               25-187, gnl|Hg17|chr16 (66462900-66463066)
               


               
               188-916, gnl|bosTau2|chr18 (14988309-14987589)
               

               
               188-916, gnl|Hg17|chr16 (66463092-66463790)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               nms (0.213858)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	25-187, gnl\|bosTau2\|chr18 (14988493-14988336)
	25-187, gnl\|Hg17\|chr16 (66462900-66463066)

	188-916, gnl\|bosTau2\|chr18 (14988309-14987589)
	188-916, gnl\|Hg17\|chr16 (66463092-66463790)

	nms (0.213858)
	csp (0.161186)
	cag (0.151194)
	ssp (0.13552)
	nmm (0.132802)
	eru (0.120048)
	nbm (0.0993246)
	ldo (0.0970026)