Non-Coding RNA Search

Ss1.1-Mixc-0035,f01.3

Sequence:


               
               TGCTCGGCCAGAAATGCATCGTTCAAACCACGTCGTGGTCCCAGTGCTCAAAGACCTGCG
GAACTGGCATCTCCACCCGCGTCACCAATGACAACCCCGACTGCCGCCTGGTGAAGGAAA
CCCGCATCTGCGAGGTGCGGCCGTGTGGACAGCCGGCCTTCGGCAGCCTGAAAAAGGGCA
AGAGATGCAGCAAGACCCGGAAAGCCCCCGAGCCGGTCAAGTTCACTTACGCCGGCTGCT
CCAGCGTGAAGAAGTACCGGCCCAAGTACTGCGGCTCCTGCGTGGACGGCCGCTGCTGCG
CGCCCCAGCAGACGCGGACCGTGAAGATGCGCTTCCGCTGCGAGGACGGGGAGACGTTTG
CCAAGAACGTCATGATGATCCAGTCCTGCCGGTGCAGCTACAGCTGCCCGCACGCCAACG
AGGCAGCCTTTCCCTTCTACCGGCTCTTCAACGACATTCACAAATTTAGGGACTAGATGC
TGCTCGGGTTTCCAGCACAGGGTGGACAAAGCGGGGAGAGAAGGGTGTGAGCGCCCCGGA
GGCGTGGGTGGGTGGGGGCGGCGGCGAAGGGGCGCGGCGCTCGGCCGGGTCGGGTCGAGG
GTCGAGTCTAGGCGTCGGGAGCTGCCTGCCGGGCGTGCTGGCGGCGCACGCGGCGCGGAC
GCTGCCGCGATCGCAGATACTTTTGCTTCGTAATATTGGAGCACATGTTCCTGCTTCATT
TTGGAGCTTGTGGTGTGGATGACGTCTGTTTCTGTTTGTAAATTATTCGGTAAAAGCGTC
GTTTTCTCCAGGCTTTTTTCCTTGTGGGTCTGCAGGGGTGAGTGAGGATGAGCTGGACAG
TTGAAGGAAGGAAACGGGAGGCCCCCCCAGGGCGGCACTCCGTGAGTGTCCGTCAGAGGC
AGCTATCTGCACTCGAAACTGCAAACAGAAATCAGGTGTTTTAAGACTGAATGTTTTTAT
TTATCAAAATGTAGCTTTCCGGGAGGGAGGGGAAATATAATACTGGAATAATTTGTAAAT
GATTTTAATTTTATATTCAGTGAAAAGAATTTATTTATGGAATGAATCATTTAATAAAGA
AATATTTACCTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTCGGCCAGAAATGCATCGTTCAAACCACGTCGTGGTCCCAGTGCTCAAAGACCTGCG
GAACTGGCATCTCCACCCGCGTCACCAATGACAACCCCGACTGCCGCCTGGTGAAGGAAA
CCCGCATCTGCGAGGTGCGGCCGTGTGGACAGCCGGCCTTCGGCAGCCTGAAAAAGGGCA
AGAGATGCAGCAAGACCCGGAAAGCCCCCGAGCCGGTCAAGTTCACTTACGCCGGCTGCT
CCAGCGTGAAGAAGTACCGGCCCAAGTACTGCGGCTCCTGCGTGGACGGCCGCTGCTGCG
CGCCCCAGCAGACGCGGACCGTGAAGATGCGCTTCCGCTGCGAGGACGGGGAGACGTTTG
CCAAGAACGTCATGATGATCCAGTCCTGCCGGTGCAGCTACAGCTGCCCGCACGCCAACG
AGGCAGCCTTTCCCTTCTACCGGCTCTTCAACGACATTCACAAATTTAGGGACTAGATGC
TGCTCGGGTTTCCAGCACAGGGTGGACAAAGCGGGGAGAGAAGGGTGTGAGCGCCCCGGA
GGCGTGGGTGGGTGGGGGCGGCGGCGAAGGGGCGCGGCGCTCGGCCGGGTCGGGTCGAGG
GTCGAGTCTAGGCGTCGGGAGCTGCCTGCCGGGCGTGCTGGCGGCGCACGCGGCGCGGAC
GCTGCCGCGATCGCAGATACTTTTGCTTCGTAATATTGGAGCACATGTTCCTGCTTCATT
TTGGAGCTTGTGGTGTGGATGACGTCTGTTTCTGTTTGTAAATTATTCGGTAAAAGCGTC
GTTTTCTCCAGGCTTTTTTCCTTGTGGGTCTGCAGGGGTGAGTGAGGATGAGCTGGACAG
TTGAAGGAAGGAAACGGGAGGCCCCCCCAGGGCGGCACTCCGTGAGTGTCCGTCAGAGGC
AGCTATCTGCACTCGAAACTGCAAACAGAAATCAGGTGTTTTAAGACTGAATGTTTTTAT
TTATCAAAATGTAGCTTTCCGGGAGGGAGGGGAAATATAATACTGGAATAATTTGTAAAT
GATTTTAATTTTATATTCAGTGAAAAGAATTTATTTATGGAATGAATCATTTAATAAAGA
AATATTTACCTAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61859984|ref|XP_585797.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61859984|ref|XP_585797.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               871-986, + strand, RNAz p=0.638285

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               871-986, + strand, RNAz p=0.638285

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001554, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001554, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               5-173, gnl|bosTau2|chr3 (44058571-44058403)
               

               
               5-173, gnl|Hg17|chr1 (85760160-85760328)
               

               
               5-173, gnl|Mm7|chr3 (145545533-145545361)
               


               
               174-845, gnl|bosTau2|chr3 (44058288-44057617)
               

               
               174-845, gnl|Hg17|chr1 (85760444-85761129)
               

               
               174-845, gnl|Mm7|chr3 (145545132-145544424)
               


               
               871-1093, gnl|bosTau2|chr3 (44057564-44057342)
               

               
               871-1093, gnl|Hg17|chr1 (85761188-85761409)
               

               
               871-1093, gnl|Mm7|chr3 (145544362-145544140)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-173, gnl|bosTau2|chr3 (44058571-44058403)
               

               
               5-173, gnl|Hg17|chr1 (85760160-85760328)
               

               
               5-173, gnl|Mm7|chr3 (145545533-145545361)
               


               
               174-845, gnl|bosTau2|chr3 (44058288-44057617)
               

               
               174-845, gnl|Hg17|chr1 (85760444-85761129)
               

               
               174-845, gnl|Mm7|chr3 (145545132-145544424)
               


               
               871-1093, gnl|bosTau2|chr3 (44057564-44057342)
               

               
               871-1093, gnl|Hg17|chr1 (85761188-85761409)
               

               
               871-1093, gnl|Mm7|chr3 (145544362-145544140)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               pla (0.935704)
               

               
               cmu (0.931966)
               

               
               aor (0.781097)
               

               
               cut (0.509771)
               

               
               vin (0.332557)
               

               
               lun (0.300978)
               

               
               che (0.272628)
               

               
               ova (0.258264)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               cje (0.165235)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.935704)
               

               
               cmu (0.931966)
               

               
               aor (0.781097)
               

               
               cut (0.509771)
               

               
               vin (0.332557)
               

               
               lun (0.300978)
               

               
               che (0.272628)
               

               
               ova (0.258264)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               cje (0.165235)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)

	5-173, gnl\|bosTau2\|chr3 (44058571-44058403)
	5-173, gnl\|Hg17\|chr1 (85760160-85760328)
	5-173, gnl\|Mm7\|chr3 (145545533-145545361)

	174-845, gnl\|bosTau2\|chr3 (44058288-44057617)
	174-845, gnl\|Hg17\|chr1 (85760444-85761129)
	174-845, gnl\|Mm7\|chr3 (145545132-145544424)

	871-1093, gnl\|bosTau2\|chr3 (44057564-44057342)
	871-1093, gnl\|Hg17\|chr1 (85761188-85761409)
	871-1093, gnl\|Mm7\|chr3 (145544362-145544140)

	pla (0.935704)
	cmu (0.931966)
	aor (0.781097)
	cut (0.509771)
	vin (0.332557)
	lun (0.300978)
	che (0.272628)
	ova (0.258264)
	nlu (0.191681)
	gul (0.177588)
	cje (0.165235)
	bfe (0.149858)
	liv (0.146284)
	spl (0.143184)
	csk (0.140746)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)