Non-Coding RNA Search

Ss1.1-Mixc-0035,f09.3

Sequence:


               
               ACCCCCCACCCCCGCCTTCGCAGTATCCCCGNGCACCACTGCCGCCCCAGCAGCGGTACC
TGCAGCAGCACCTGCAGCAGCATCATTTTCTTCAGGATCGCCGTGGAGGCAGCCTGGACA
TAAACGACGGGCACTGTGGCCTGGGCATGGGCAGCGAAATGAACGCCGCCCTCATGCACC
GGAGACACACAGACCCGGTGCAGCTCCAAGTGGCCGGGCGAGTGCGGTGGGCCCGGGCGC
TGTACGACTTTGAGGCCCTCGAGGATGACGAGCTGGGATTCCAGTGCGGAGAGGTGGTTG
AGGTCCTGGACAGCTCCAACCCGTCCTGGTGGACCGGCCGCCTGCACAACAAGCTGGGCC
TCTTCCCTGCCAACTACGTGGCGCCTATGACCCGGTGAAGCCCTTTGGAGGGTCGGAGGC
TTTTGAATGAAGCTGCCTGCAAGAGACGGGGCAAGGAAGAAAAACTGGAACTACGCATCC
ATCCATATGTGTGTGTGTGTATACGCACCTGTATATATGCCTACGTCTATGTTCATAATA
GTAATTTATTGGCAATTTAGTAGGTTACTTAGTTGACACGAAAGGAACTTGGATGAATTA
TATTCAGACTTATGTTTCTACTTCCTCAGCGGGTGTGCAGAGGCGCGGGGGCGCCGCGAG
GCAGGGAGCAGGGAAACGAAACTGACGTTCTTCCCGTCCTGAAATGGCACCGCTTCCCCC
TCGCCCTGGGAATTTTCAGAGAGGAGCTGAGCGGGGTCCACACCTGGCGTTGGATGCAGA
ACAACAGGGTGGACTTGGACTTCATGGGACAAGTTCTAGCTTTACCTGCGAGTCCTGCTC
CCCCTGAGGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCCCCACCCCCGCCTTCGCAGTATCCCCGNGCACCACTGCCGCCCCAGCAGCGGTACC
TGCAGCAGCACCTGCAGCAGCATCATTTTCTTCAGGATCGCCGTGGAGGCAGCCTGGACA
TAAACGACGGGCACTGTGGCCTGGGCATGGGCAGCGAAATGAACGCCGCCCTCATGCACC
GGAGACACACAGACCCGGTGCAGCTCCAAGTGGCCGGGCGAGTGCGGTGGGCCCGGGCGC
TGTACGACTTTGAGGCCCTCGAGGATGACGAGCTGGGATTCCAGTGCGGAGAGGTGGTTG
AGGTCCTGGACAGCTCCAACCCGTCCTGGTGGACCGGCCGCCTGCACAACAAGCTGGGCC
TCTTCCCTGCCAACTACGTGGCGCCTATGACCCGGTGAAGCCCTTTGGAGGGTCGGAGGC
TTTTGAATGAAGCTGCCTGCAAGAGACGGGGCAAGGAAGAAAAACTGGAACTACGCATCC
ATCCATATGTGTGTGTGTGTATACGCACCTGTATATATGCCTACGTCTATGTTCATAATA
GTAATTTATTGGCAATTTAGTAGGTTACTTAGTTGACACGAAAGGAACTTGGATGAATTA
TATTCAGACTTATGTTTCTACTTCCTCAGCGGGTGTGCAGAGGCGCGGGGGCGCCGCGAG
GCAGGGAGCAGGGAAACGAAACTGACGTTCTTCCCGTCCTGAAATGGCACCGCTTCCCCC
TCGCCCTGGGAATTTTCAGAGAGGAGCTGAGCGGGGTCCACACCTGGCGTTGGATGCAGA
ACAACAGGGTGGACTTGGACTTCATGGGACAAGTTCTAGCTTTACCTGCGAGTCCTGCTC
CCCCTGAGGGTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|30749885|pdb|1OEB|B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30749885|pdb|1OEB|B

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               218-844, gnl|bosTau2|chr5 (68174330-68173666)
               

               
               218-844, gnl|Hg17|chr22 (38691408-38692033)
               

               
               218-844, gnl|Mm7|chr15 (80732903-80733538)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               218-844, gnl|bosTau2|chr5 (68174330-68173666)
               

               
               218-844, gnl|Hg17|chr22 (38691408-38692033)
               

               
               218-844, gnl|Mm7|chr15 (80732903-80733538)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)
               

               
               jej (0.0989218)

	218-844, gnl\|bosTau2\|chr5 (68174330-68173666)
	218-844, gnl\|Hg17\|chr22 (38691408-38692033)
	218-844, gnl\|Mm7\|chr15 (80732903-80733538)