Non-Coding RNA Search

Ss1.1-Mixc-0035,f13.3

Sequence:


               
               CCGGAACCGAGGCCCATCTGGAAGAGCCTTGCATTAAGAGCCCCAGGTTCACTCGCTGGG
GCTGAGGCAGCTGAGGAGCGGTGGTGAAGAACTGGAGCATGACCAACTTTCTCTTCCCAA
GGGGACTGGAAGGGAGTGGCCCACAGGGGAAGAGGAGGAGAACCTCAGAGGAAGACAGTC
CCCATCCCAGGAATGGAACAAGGAATTACCAGCCTGCCCTCTGGTGAAATGCACGACTCT
CCAGGCAGCAACGTTCAACCTACTTGAAGCTTCACAAGTCCAAGCACAGTCTGGTGGGGA
GGCATGAAATCTCCCTTCTCAAAAGACCCCCAGAGGCACTGCAGGCCACTCTAAGCAGAA
TCTCTCCCACAAGCCTGTGAGTCAGCGCTAAGGGGCACCATGGTCTGTGCCCCCAGCTTT
TCAGCAGTAAAAAGCCAGCTGAGCATGGTTAAGATGGGAGGGCTGAGCCTGAACTCCCTG
TCCCCTGAGGGTAGAGTCCTCTTAAGGGCTGGCACTGGTCTTGGCCTAATGGCGGAAGCA
GTGCCCTGGCTTCATAAGCACCTCACCACTCCCACTGCAGGGAGGCAGGGAAGTGGGGAC
TGGGGAACCTCTCCCAAGTAGGGGATGAGATGGGGGGGATCCCCACAAATGTCCTGGATC
CAGTTATCTTCGAGTTTCTAATAAAGGCAGTATGTGCTCATTCCTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGAACCGAGGCCCATCTGGAAGAGCCTTGCATTAAGAGCCCCAGGTTCACTCGCTGGG
GCTGAGGCAGCTGAGGAGCGGTGGTGAAGAACTGGAGCATGACCAACTTTCTCTTCCCAA
GGGGACTGGAAGGGAGTGGCCCACAGGGGAAGAGGAGGAGAACCTCAGAGGAAGACAGTC
CCCATCCCAGGAATGGAACAAGGAATTACCAGCCTGCCCTCTGGTGAAATGCACGACTCT
CCAGGCAGCAACGTTCAACCTACTTGAAGCTTCACAAGTCCAAGCACAGTCTGGTGGGGA
GGCATGAAATCTCCCTTCTCAAAAGACCCCCAGAGGCACTGCAGGCCACTCTAAGCAGAA
TCTCTCCCACAAGCCTGTGAGTCAGCGCTAAGGGGCACCATGGTCTGTGCCCCCAGCTTT
TCAGCAGTAAAAAGCCAGCTGAGCATGGTTAAGATGGGAGGGCTGAGCCTGAACTCCCTG
TCCCCTGAGGGTAGAGTCCTCTTAAGGGCTGGCACTGGTCTTGGCCTAATGGCGGAAGCA
GTGCCCTGGCTTCATAAGCACCTCACCACTCCCACTGCAGGGAGGCAGGGAAGTGGGGAC
TGGGGAACCTCTCCCAAGTAGGGGATGAGATGGGGGGGATCCCCACAAATGTCCTGGATC
CAGTTATCTTCGAGTTTCTAATAAAGGCAGTATGTGCTCATTCCTGGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               29-217, - strand, RNAz p=0.999845
               

               
               436-597, - strand, RNAz p=0.999315

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               29-217, - strand, RNAz p=0.999845
               

               
               436-597, - strand, RNAz p=0.999315

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-597, gnl|bosTau2|chr22 (38090667-38090066)
               

               
               3-597, gnl|Hg17|chr3 (49730090-49729384)
               

               
               3-597, gnl|Mm7|chr9 (107786774-107787275)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-597, gnl|bosTau2|chr22 (38090667-38090066)
               

               
               3-597, gnl|Hg17|chr3 (49730090-49729384)
               

               
               3-597, gnl|Mm7|chr9 (107786774-107787275)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               amn (0.417711)
               

               
               lnt (0.142308)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               lnt (0.142308)

	29-217, - strand, RNAz p=0.999845
	436-597, - strand, RNAz p=0.999315

	3-597, gnl\|bosTau2\|chr22 (38090667-38090066)
	3-597, gnl\|Hg17\|chr3 (49730090-49729384)
	3-597, gnl\|Mm7\|chr9 (107786774-107787275)