Non-Coding RNA Search

Ss1.1-Mixc-0035,i03.3

Sequence:


               
               GTTTGAACTGAATGAAGTAACAAAGGTGGGGCCTCGCCAGCTCTACATACTATAAAATGC
TGGCTGAGTAAGGGCATAGAATTTAAAGGTTAATTTCCTATCCCCTACTCTTGTTTCCTC
TTCTGATTAAGGTGCTCTTCACATTTTGTTTTTTCCTGAGAACTTTAGCCATCAGATGAG
GTTCCTTAGTTCACCGTTGTTATTTGTTTCCCTATAATAGCTCTAGGCTATATGCCTATT
CCTTGTAAACCAGCTTCGGGAGAAGATTATATTTTATACAGGGAAACATGTTTCACAAAC
TGAAAAGCCCTCATAAGTGTATCTCTTTTGAAGGTATAATTTTGTTTATTCCATCCCAAA
CATTAGGACAAACAGAAACTGAAGGCTCTGAGATGAAATGAAAGAGAAAAGGAAAAAATT
ATATCAATTGCTAGAACTACTGTTTGAAACTTTTCAAGGCACATGAAATACTTGAAAATG
TCTCGTTTATGTTATTTATGATGTTTTGTACAATGTTTTTATTATTGTATTATTTTATAA
ATGGAGGTGCAGGATATCACCTGAATTATTAATGAATGGCCAGGAAGTAATTTTCTTCTC
ATTCGTCTAAAACTACTGCCTTTGAAGTGCACACACGTGCATACATGGACACTGCACCAA
TTTCTCTAGTATAAATTATAGGCATGGGCACCTTTGTGGCTTTTAAGCCAATAGACTGAA
CTGCAAAATAAAGACACCAGAGTGTGTGTATACAAATTTCATTATATTAAATTGTATAGG
TTTCCTCAATTTTACCCTTTTGGTCTCTCTGACAGTCTTGCTTTCAGTATCCCCAGAGTT
CCTCATCAGCATCCCTTTCTGTTACACTGTTCCATGCTTTGTCTCTAATTAACTCCAAGA
TCCAACTGTGTAACTCTATTGGTCTTGCCCTATTATAACTGTTGTGACTTTCAGATTGTA
TCTGTACTCACGGATTGCTGTCTCACCAGTATGTCTGGAAGGTCATTCTGAATGAGAAGT
AAATTATTTTATGTAATACATTTTTCAAGTGTGTTTTTCAATTGTATTTGCCCCCTTTTT
CATCACTACTTAACATACTAGGCTTACCTGCTCACAGTCCTTGGACAGAATATTCCTGCT
ATATGCATGCCTATTTTATCACAATGTGCTTTAAAGGCCTCAGAGTGGATGCTTCCAGTG
AAACACCTGCATCTGAATCATAAAGGTAAATAAATGCTTCATACAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGAACTGAATGAAGTAACAAAGGTGGGGCCTCGCCAGCTCTACATACTATAAAATGC
TGGCTGAGTAAGGGCATAGAATTTAAAGGTTAATTTCCTATCCCCTACTCTTGTTTCCTC
TTCTGATTAAGGTGCTCTTCACATTTTGTTTTTTCCTGAGAACTTTAGCCATCAGATGAG
GTTCCTTAGTTCACCGTTGTTATTTGTTTCCCTATAATAGCTCTAGGCTATATGCCTATT
CCTTGTAAACCAGCTTCGGGAGAAGATTATATTTTATACAGGGAAACATGTTTCACAAAC
TGAAAAGCCCTCATAAGTGTATCTCTTTTGAAGGTATAATTTTGTTTATTCCATCCCAAA
CATTAGGACAAACAGAAACTGAAGGCTCTGAGATGAAATGAAAGAGAAAAGGAAAAAATT
ATATCAATTGCTAGAACTACTGTTTGAAACTTTTCAAGGCACATGAAATACTTGAAAATG
TCTCGTTTATGTTATTTATGATGTTTTGTACAATGTTTTTATTATTGTATTATTTTATAA
ATGGAGGTGCAGGATATCACCTGAATTATTAATGAATGGCCAGGAAGTAATTTTCTTCTC
ATTCGTCTAAAACTACTGCCTTTGAAGTGCACACACGTGCATACATGGACACTGCACCAA
TTTCTCTAGTATAAATTATAGGCATGGGCACCTTTGTGGCTTTTAAGCCAATAGACTGAA
CTGCAAAATAAAGACACCAGAGTGTGTGTATACAAATTTCATTATATTAAATTGTATAGG
TTTCCTCAATTTTACCCTTTTGGTCTCTCTGACAGTCTTGCTTTCAGTATCCCCAGAGTT
CCTCATCAGCATCCCTTTCTGTTACACTGTTCCATGCTTTGTCTCTAATTAACTCCAAGA
TCCAACTGTGTAACTCTATTGGTCTTGCCCTATTATAACTGTTGTGACTTTCAGATTGTA
TCTGTACTCACGGATTGCTGTCTCACCAGTATGTCTGGAAGGTCATTCTGAATGAGAAGT
AAATTATTTTATGTAATACATTTTTCAAGTGTGTTTTTCAATTGTATTTGCCCCCTTTTT
CATCACTACTTAACATACTAGGCTTACCTGCTCACAGTCCTTGGACAGAATATTCCTGCT
ATATGCATGCCTATTTTATCACAATGTGCTTTAAAGGCCTCAGAGTGGATGCTTCCAGTG
AAACACCTGCATCTGAATCATAAAGGTAAATAAATGCTTCATACAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-1247, gnl|bosTau2|chr3 (6801935-6800677)
               

               
               3-1247, gnl|Hg17|chr1 (159776982-159778246)
               

               
               3-1247, gnl|Mm7|chr1 (169719187-169717957)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1247, gnl|bosTau2|chr3 (6801935-6800677)
               

               
               3-1247, gnl|Hg17|chr1 (159776982-159778246)
               

               
               3-1247, gnl|Mm7|chr1 (169719187-169717957)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               clu (0.717875)
               

               
               fco (0.471624)
               

               
               sug (0.381874)
               

               
               liv (0.292569)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               ecc (0.23007)
               

               
               nje (0.16592)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ret (0.128733)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.717875)
               

               
               fco (0.471624)
               

               
               sug (0.381874)
               

               
               liv (0.292569)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               ecc (0.23007)
               

               
               nje (0.16592)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ret (0.128733)

	3-1247, gnl\|bosTau2\|chr3 (6801935-6800677)
	3-1247, gnl\|Hg17\|chr1 (159776982-159778246)
	3-1247, gnl\|Mm7\|chr1 (169719187-169717957)

	clu (0.717875)
	fco (0.471624)
	sug (0.381874)
	liv (0.292569)
	ova (0.258264)
	tra (0.246184)
	ecc (0.23007)
	nje (0.16592)
	fat (0.147427)
	lin (0.145603)
	hyp (0.142837)
	pla (0.133672)
	ret (0.128733)