Ss1.1-Mixc-0035,n13.3
|
AAAAATGCAGTTTGTTGCTTACCCTTAGGGGTTCTTTTATCTGTGGCAGCCTTGTCCCTG
GTCACTTTTTTTCCTCTCCAAACTCCTTTTCCTTGTGATTGATTTCCCCCTGCCCCGTAT
TAGCATCTCCTTGGGAATGGTGGGCTTCCTTGAATGATGCTTCAGGGTGCAGGGTAGAGC
CTGTCAGCACCCAGGCTGAGAACAATGAGAACTTGCTCCATGCCTTTCCCCTGATCCAAT
CCACAGATCAGTTAAGGAATCTGAAGGGAGATGGGAAACAAGAGCCCAAATGCCCGTCCC
CCACCTCCTGCTCTGGATTTAACTCTCAGGTCCAATTCAGAGTTGAAACAAACTTTAAGT
AATAACTTCCCCAACATTGTTTTTCTAAAAAGGAAGAAGATAAAAGGCACATAGGATGTT
ACTGCGTGAGGCCTGTTAACCATTCAGTAGCAGTGGGGGCACTGGGCCTCCTAAATGCCC
GTCAGTGGGGTTTTCACTGCAGGAGCGTCTCATTAACTTCCTTTCCCTCAATGCCTTTGT
CTTACCTCTTCTGTGCCTGCTTCTTTATGGCTCTTCTCACGCTCTGCACTGATTTGGGCT
CCACTCAATGGCATCAGGTGGACCAGGGTACCTTCTTAGGACTTGGAGAGTAGCTAATCC
ACCCTGGGCCACAGTTCTTGAGGCGGGGGCAGGGTGGGGGCAGGGATGCCACAGGTTCAC
CTGATCCCATCAGCTCTCTGATCTGCTTAGGCTCCAAGGCCACTGAGATCACCTCTGAGG
GCCAGGTGGTTCTTGTCATCTCTCACAGGTTTGGGAGATGGGAGCACTCCACCCCTGGAC
AATTGGGTGTGGTCTGTCAGAGGATGCTTCGTGCCCCGAACACTGGCCTCTTTAGCAGTG
TTTACACTGATTCATCTGCAGCCCCTTGTGTGGCCTGGCAGGGCCAGGATCCAGGGTCCA
GGGTCTATGACCAAAACTGCTTCTCAGATGCCCCTGCTCAAAGCAGAGGCGCTCTGAGGT
CCAAAGGCCTCATGTAGGACTCAGACCTCAGAGTGAGTCTAGGAGCAGGAATCATAGAAA
TCAAGAGCAGAAACTACCCCTCAACCCCATCGCGAGTGAAATGACCCTAATTCATACCAG
TTGCAAAGCTTGGGGGAGCAGGTTCCCCAAAGCAGTTTCTTAAGCCTTGAGAATCTCCAA
GAGAATTCCTGGCATGAGGGACAGGAACTAGGTCCTTCGCTGACTACCCCTCAGGCACGC
CTCGAGCCCAGGAATGGGGGGGGACAGGTGGGGTGGGAAAACAGGTGGGTGAGGCTCCCC
TGTTGGCGCTCCTCATGGACTCAGTTGGATGGAGGCAATGATGAAGGTCCACACTACAAA
TGCAGCGTTCTCATCTCAAAGCAAACTAGTTCCGGAGGGAGGATGTGTCGGGGGTAAGCA
GATCAGACAGTTTGCACCAAGATCTGTCCCCCTGCCCCGACACCAGGCTTCTGGCCTCCC
CGGCAGCAGTGGGAAAGCTGCTGTTCTCAGCCACTGAGCCTTTGAGCCTTGGGGACGCTG
CCTCCAGCTTTGCCCCTGAGCCAAAAGGGAGGGACTCTGCCCCTAGGAGAAGGACCTTTC
TCCTGAAGAGACAGAGCCTGCTGCCTCCACTGCAGCTTCTCTTTGGGCCCATTTCAGGCT
CAGCCGAACTGGGACCTGGGGAGCGGAGTGGAGCCTGCCCTGCATTCCCCTCTCCTCTGG
CTCGTGTGTCCTTGTAACGTCAGCTGGTGTCGTACAGAGGGCAGGGGAGTATACACACAC
CCAGAACTCTTGCTGGTCAGAGATTCCCTGAGTGTCTGTCCTCACCCGAGCCTGTTTTGT
GTGTCTGTGTTGTGAAGCTTGGGCCTCTGCAGAGAAGGGGTGGGGATAAGTGTTACCTGA
AGAATGCTTATCATTCTTTTGTTGGTGGGATCTGTTTGGGACCCGGGGTGGGGGGTGTGG
GGAGCTCGACTTTGTCTTCGTGAATAAACTCATTTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAAAATGCAGTTTGTTGCTTACCCTTAGGGGTTCTTTTATCTGTGGCAGCCTTGTCCCTG
GTCACTTTTTTTCCTCTCCAAACTCCTTTTCCTTGTGATTGATTTCCCCCTGCCCCGTAT
TAGCATCTCCTTGGGAATGGTGGGCTTCCTTGAATGATGCTTCAGGGTGCAGGGTAGAGC
CTGTCAGCACCCAGGCTGAGAACAATGAGAACTTGCTCCATGCCTTTCCCCTGATCCAAT
CCACAGATCAGTTAAGGAATCTGAAGGGAGATGGGAAACAAGAGCCCAAATGCCCGTCCC
CCACCTCCTGCTCTGGATTTAACTCTCAGGTCCAATTCAGAGTTGAAACAAACTTTAAGT
AATAACTTCCCCAACATTGTTTTTCTAAAAAGGAAGAAGATAAAAGGCACATAGGATGTT
ACTGCGTGAGGCCTGTTAACCATTCAGTAGCAGTGGGGGCACTGGGCCTCCTAAATGCCC
GTCAGTGGGGTTTTCACTGCAGGAGCGTCTCATTAACTTCCTTTCCCTCAATGCCTTTGT
CTTACCTCTTCTGTGCCTGCTTCTTTATGGCTCTTCTCACGCTCTGCACTGATTTGGGCT
CCACTCAATGGCATCAGGTGGACCAGGGTACCTTCTTAGGACTTGGAGAGTAGCTAATCC
ACCCTGGGCCACAGTTCTTGAGGCGGGGGCAGGGTGGGGGCAGGGATGCCACAGGTTCAC
CTGATCCCATCAGCTCTCTGATCTGCTTAGGCTCCAAGGCCACTGAGATCACCTCTGAGG
GCCAGGTGGTTCTTGTCATCTCTCACAGGTTTGGGAGATGGGAGCACTCCACCCCTGGAC
AATTGGGTGTGGTCTGTCAGAGGATGCTTCGTGCCCCGAACACTGGCCTCTTTAGCAGTG
TTTACACTGATTCATCTGCAGCCCCTTGTGTGGCCTGGCAGGGCCAGGATCCAGGGTCCA
GGGTCTATGACCAAAACTGCTTCTCAGATGCCCCTGCTCAAAGCAGAGGCGCTCTGAGGT
CCAAAGGCCTCATGTAGGACTCAGACCTCAGAGTGAGTCTAGGAGCAGGAATCATAGAAA
TCAAGAGCAGAAACTACCCCTCAACCCCATCGCGAGTGAAATGACCCTAATTCATACCAG
TTGCAAAGCTTGGGGGAGCAGGTTCCCCAAAGCAGTTTCTTAAGCCTTGAGAATCTCCAA
GAGAATTCCTGGCATGAGGGACAGGAACTAGGTCCTTCGCTGACTACCCCTCAGGCACGC
CTCGAGCCCAGGAATGGGGGGGGACAGGTGGGGTGGGAAAACAGGTGGGTGAGGCTCCCC
TGTTGGCGCTCCTCATGGACTCAGTTGGATGGAGGCAATGATGAAGGTCCACACTACAAA
TGCAGCGTTCTCATCTCAAAGCAAACTAGTTCCGGAGGGAGGATGTGTCGGGGGTAAGCA
GATCAGACAGTTTGCACCAAGATCTGTCCCCCTGCCCCGACACCAGGCTTCTGGCCTCCC
CGGCAGCAGTGGGAAAGCTGCTGTTCTCAGCCACTGAGCCTTTGAGCCTTGGGGACGCTG
CCTCCAGCTTTGCCCCTGAGCCAAAAGGGAGGGACTCTGCCCCTAGGAGAAGGACCTTTC
TCCTGAAGAGACAGAGCCTGCTGCCTCCACTGCAGCTTCTCTTTGGGCCCATTTCAGGCT
CAGCCGAACTGGGACCTGGGGAGCGGAGTGGAGCCTGCCCTGCATTCCCCTCTCCTCTGG
CTCGTGTGTCCTTGTAACGTCAGCTGGTGTCGTACAGAGGGCAGGGGAGTATACACACAC
CCAGAACTCTTGCTGGTCAGAGATTCCCTGAGTGTCTGTCCTCACCCGAGCCTGTTTTGT
GTGTCTGTGTTGTGAAGCTTGGGCCTCTGCAGAGAAGGGGTGGGGATAAGTGTTACCTGA
AGAATGCTTATCATTCTTTTGTTGGTGGGATCTGTTTGGGACCCGGGGTGGGGGGTGTGG
GGAGCTCGACTTTGTCTTCGTGAATAAACTCATTTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1837-1988, - strand, RNAmicro p=0.995073 |
|
1542-1648, - strand, RNAmicro p=0.959638 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
1837-1988, - strand, RNAmicro p=0.995073 |
|
1542-1648, - strand, RNAmicro p=0.959638 |
|
1468-1679, BP464920 full-length enriched swine cDNA library, adult uterus Sus
(dbj|BP464920.1|), blast E-value=0, identity=100% |
|
1468-1679, DB816850 full-length enriched swine cDNA library, adult spleen Sus
(dbj|DB816850.1|), blast E-value=0, identity=97.64% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
1468-1679, BP464920 full-length enriched swine cDNA library, adult uterus Sus
(dbj|BP464920.1|), blast E-value=0, identity=100% |
|
1468-1679, DB816850 full-length enriched swine cDNA library, adult spleen Sus
(dbj|DB816850.1|), blast E-value=0, identity=97.64% |
|
336-648, gnl|bosTau2|chr19 (8025747-8025430) |
|
336-648, gnl|canFam2|chr9 (41268297-41267600) |
|
336-648, gnl|dasNov1|scaffold_115302 (2133-1442) |
|
336-648, gnl|echTel1|scaffold_315911 (68006-67422) |
|
336-648, gnl|hg17|chr17 (31075652-31076351) |
|
336-648, gnl|Hg17|chr17 (31075738-31076037) |
|
336-648, gnl|loxAfr1|scaffold_21353 (38467-39152) |
|
336-648, gnl|mm7|chr11 (83473313-83473932) |
|
336-648, gnl|Mm7|chr11 (83473404-83473696) |
|
336-648, gnl|monDom2|scaffold_44 (7215261-7214681) |
|
336-648, gnl|oryCun1|scaffold_134129 (663-5) |
|
336-648, gnl|panTro1|chr19 (34600230-34600931) |
|
336-648, gnl|rheMac2|chr16 (30992882-30993580) |
|
336-648, gnl|rn3|chr10 (71500862-71501514) |
| |
|
721-2011, gnl|bosTau2|chr19 (8025325-8024035) |
|
721-2011, gnl|Hg17|chr17 (31076178-31077531) |
|
721-2011, gnl|Mm7|chr11 (83473804-83474928) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
336-648, gnl|bosTau2|chr19 (8025747-8025430) |
|
336-648, gnl|canFam2|chr9 (41268297-41267600) |
|
336-648, gnl|dasNov1|scaffold_115302 (2133-1442) |
|
336-648, gnl|echTel1|scaffold_315911 (68006-67422) |
|
336-648, gnl|hg17|chr17 (31075652-31076351) |
|
336-648, gnl|Hg17|chr17 (31075738-31076037) |
|
336-648, gnl|loxAfr1|scaffold_21353 (38467-39152) |
|
336-648, gnl|mm7|chr11 (83473313-83473932) |
|
336-648, gnl|Mm7|chr11 (83473404-83473696) |
|
336-648, gnl|monDom2|scaffold_44 (7215261-7214681) |
|
336-648, gnl|oryCun1|scaffold_134129 (663-5) |
|
336-648, gnl|panTro1|chr19 (34600230-34600931) |
|
336-648, gnl|rheMac2|chr16 (30992882-30993580) |
|
336-648, gnl|rn3|chr10 (71500862-71501514) |
| |
|
721-2011, gnl|bosTau2|chr19 (8025325-8024035) |
|
721-2011, gnl|Hg17|chr17 (31076178-31077531) |
|
721-2011, gnl|Mm7|chr11 (83473804-83474928) |
|
cst (0.280073) |
|
nmm (0.265604) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
fbs (0.175346) |
|
hyp (0.142837) |
|
eep (0.122564) |
|
cly (0.120642) |
|
clu (0.119646) |
|
ecc (0.115035) |
|
jej (0.0989218) |
|
cst (0.280073) |
|
nmm (0.265604) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
fbs (0.175346) |
|
hyp (0.142837) |
|
eep (0.122564) |
|
cly (0.120642) |
|
clu (0.119646) |
|
ecc (0.115035) |
|
jej (0.0989218) |
