Non-Coding RNA Search

Ss1.1-Mixc-0035c15.3

Sequence:


               
               TTTTCATTCCCAGACCCCGGGCCTGTCACTATCGGTCACTTGGCCGGGCCTCCCGCAGTT
GCAACTCCAGTTGTCCGCAGGGTGAGGAGATGGCCTCTCCCTCTAGACAGGCCCCCCTCG
GGGGGTCAGGACTGCTTCAAGGGAGCCGGGCTCGTTCTTATGGAAGCCTTGTGCAGTCTG
CCTGCTCCCCGGTGAGGGAAAGACGCCTGGAGCATCAGTTGGCGCCCGGAGACACCCTGG
CTGGACTAGCACTCAAATACGGGGTGACGATGGAACAGATTAAACGTGCAAACCGACTTT
ATACTAATGACTCCATCTTCCTGAAGAAAACCCTCTACATCCCCATTCTGACAGAGCCCA
GAGACTTGTTCAATGGTTTGGAATCTGAGGAAGAGAAGGATGGAGAGGAAGAGGTACAGC
CAAGTAAGGATGAAGTATGGTCACACTCAGCTGAGAGGAAGAAACAAGAAACAGGTCCGG
GACGAGCCAATGGTGAAGTCCTTCCCACTCCTGGCCAGGAGCCCCCGACTCCCATCCATG
ACCTCTCTGCCTCTGACTTCCTTAAGAAGCTTGATTCACAGATCAGCTTGTCAAAGAAGG
CTGCTGCCCAGAAGCTGAAAAGGGGGGAAAGTGGGGTACCTGGGGAGGATTCAGGTCTTC
ACCTGAGCTCTCCTCGGATGCAGCAACGAGCAGTCCTAGGTCCTGTGCCACTGACCCGGA
CCTCTCGGACCCGGACCCTTCGAGACCAGGAGGATGAAATCTTCAAACTCTGACGTCCCC
AGAACTGACTGAGAGAAGCAAGATGTTGAAGGATCAACTTGAGGGAGAGAGGAGCCTGAG
GTGAGGCTCAAGAACACGGCTTCCCAGCCCACCTCCCTTCCTCCTGCCATCTTCCCAGCC
TCCTTGTCCATTAGGAGTTCCTTAGCCTGGAGCAGTTCTACTGGCAAGGGTAGGGGGTGG
GAAAGAGACCCCTTCTCATTTCTTGGGCTGAATCTAGAGTTGTCCTTTAAATTCAAAAGG
CTCTGAACATCCTTGCTGCCTTTCCCATCCCTCTCACCATTCCTTGGCCTTAGAGCAGGG
AGGCAGGGACTCCTCCAGCCCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCATTCCCAGACCCCGGGCCTGTCACTATCGGTCACTTGGCCGGGCCTCCCGCAGTT
GCAACTCCAGTTGTCCGCAGGGTGAGGAGATGGCCTCTCCCTCTAGACAGGCCCCCCTCG
GGGGGTCAGGACTGCTTCAAGGGAGCCGGGCTCGTTCTTATGGAAGCCTTGTGCAGTCTG
CCTGCTCCCCGGTGAGGGAAAGACGCCTGGAGCATCAGTTGGCGCCCGGAGACACCCTGG
CTGGACTAGCACTCAAATACGGGGTGACGATGGAACAGATTAAACGTGCAAACCGACTTT
ATACTAATGACTCCATCTTCCTGAAGAAAACCCTCTACATCCCCATTCTGACAGAGCCCA
GAGACTTGTTCAATGGTTTGGAATCTGAGGAAGAGAAGGATGGAGAGGAAGAGGTACAGC
CAAGTAAGGATGAAGTATGGTCACACTCAGCTGAGAGGAAGAAACAAGAAACAGGTCCGG
GACGAGCCAATGGTGAAGTCCTTCCCACTCCTGGCCAGGAGCCCCCGACTCCCATCCATG
ACCTCTCTGCCTCTGACTTCCTTAAGAAGCTTGATTCACAGATCAGCTTGTCAAAGAAGG
CTGCTGCCCAGAAGCTGAAAAGGGGGGAAAGTGGGGTACCTGGGGAGGATTCAGGTCTTC
ACCTGAGCTCTCCTCGGATGCAGCAACGAGCAGTCCTAGGTCCTGTGCCACTGACCCGGA
CCTCTCGGACCCGGACCCTTCGAGACCAGGAGGATGAAATCTTCAAACTCTGACGTCCCC
AGAACTGACTGAGAGAAGCAAGATGTTGAAGGATCAACTTGAGGGAGAGAGGAGCCTGAG
GTGAGGCTCAAGAACACGGCTTCCCAGCCCACCTCCCTTCCTCCTGCCATCTTCCCAGCC
TCCTTGTCCATTAGGAGTTCCTTAGCCTGGAGCAGTTCTACTGGCAAGGGTAGGGGGTGG
GAAAGAGACCCCTTCTCATTTCTTGGGCTGAATCTAGAGTTGTCCTTTAAATTCAAAAGG
CTCTGAACATCCTTGCTGCCTTTCCCATCCCTCTCACCATTCCTTGGCCTTAGAGCAGGG
AGGCAGGGACTCCTCCAGCCCCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9N012_MACFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9N012_MACFA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               83-202, + strand, RNAz p=0.775292
               

               
               753-1102, - strand, RNAz p=0.999982

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-202, + strand, RNAz p=0.775292
               

               
               753-1102, - strand, RNAz p=0.999982

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC031649, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC031649, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               5-272, gnl|bosTau2|chr3 (16403270-16403538)
               

               
               5-272, gnl|canFam2|chr17 (63309034-63309224)
               

               
               5-272, gnl|danRer3|chrNA (175231336-175231507)
               

               
               5-272, gnl|dasNov1|scaffold_13873 (9853-9663)
               

               
               5-272, gnl|echTel1|scaffold_312232 (72444-72254)
               

               
               5-272, gnl|fr1|chrUn (255863365-255863211)
               

               
               5-272, gnl|hg17|chr1 (147950623-147950813)
               

               
               5-272, gnl|Hg17|chr1 (147950890-147950625)
               

               
               5-272, gnl|loxAfr1|scaffold_67200 (688-878)
               

               
               5-272, gnl|mm7|chr3 (95008952-95008762)
               

               
               5-272, gnl|Mm7|chr3 (95008689-95008948)
               

               
               5-272, gnl|monDom2|scaffold_44 (4372498-4372683)
               

               
               5-272, gnl|oryCun1|scaffold_213457 (39692-39507)
               

               
               5-272, gnl|panTro1|chr1 (129687024-129687213)
               

               
               5-272, gnl|rheMac2|chr1 (129590501-129590691)
               

               
               5-272, gnl|rn3|chr2 (190001091-190000901)
               

               
               5-272, gnl|tetNig1|chrUn_random (41028439-41028599)
               

               
               5-272, gnl|xenTro1|scaffold_96 (1452669-1452488)
               


               
               634-1102, gnl|bosTau2|chr3 (16410005-16410477)
               

               
               634-1102, gnl|Hg17|chr1 (147946570-147946102)
               

               
               634-1102, gnl|Mm7|chr3 (95012344-95012776)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-272, gnl|bosTau2|chr3 (16403270-16403538)
               

               
               5-272, gnl|canFam2|chr17 (63309034-63309224)
               

               
               5-272, gnl|danRer3|chrNA (175231336-175231507)
               

               
               5-272, gnl|dasNov1|scaffold_13873 (9853-9663)
               

               
               5-272, gnl|echTel1|scaffold_312232 (72444-72254)
               

               
               5-272, gnl|fr1|chrUn (255863365-255863211)
               

               
               5-272, gnl|hg17|chr1 (147950623-147950813)
               

               
               5-272, gnl|Hg17|chr1 (147950890-147950625)
               

               
               5-272, gnl|loxAfr1|scaffold_67200 (688-878)
               

               
               5-272, gnl|mm7|chr3 (95008952-95008762)
               

               
               5-272, gnl|Mm7|chr3 (95008689-95008948)
               

               
               5-272, gnl|monDom2|scaffold_44 (4372498-4372683)
               

               
               5-272, gnl|oryCun1|scaffold_213457 (39692-39507)
               

               
               5-272, gnl|panTro1|chr1 (129687024-129687213)
               

               
               5-272, gnl|rheMac2|chr1 (129590501-129590691)
               

               
               5-272, gnl|rn3|chr2 (190001091-190000901)
               

               
               5-272, gnl|tetNig1|chrUn_random (41028439-41028599)
               

               
               5-272, gnl|xenTro1|scaffold_96 (1452669-1452488)
               


               
               634-1102, gnl|bosTau2|chr3 (16410005-16410477)
               

               
               634-1102, gnl|Hg17|chr1 (147946570-147946102)
               

               
               634-1102, gnl|Mm7|chr3 (95012344-95012776)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	83-202, + strand, RNAz p=0.775292
	753-1102, - strand, RNAz p=0.999982

	5-272, gnl\|bosTau2\|chr3 (16403270-16403538)
	5-272, gnl\|canFam2\|chr17 (63309034-63309224)
	5-272, gnl\|danRer3\|chrNA (175231336-175231507)
	5-272, gnl\|dasNov1\|scaffold_13873 (9853-9663)
	5-272, gnl\|echTel1\|scaffold_312232 (72444-72254)
	5-272, gnl\|fr1\|chrUn (255863365-255863211)
	5-272, gnl\|hg17\|chr1 (147950623-147950813)
	5-272, gnl\|Hg17\|chr1 (147950890-147950625)
	5-272, gnl\|loxAfr1\|scaffold_67200 (688-878)
	5-272, gnl\|mm7\|chr3 (95008952-95008762)
	5-272, gnl\|Mm7\|chr3 (95008689-95008948)
	5-272, gnl\|monDom2\|scaffold_44 (4372498-4372683)
	5-272, gnl\|oryCun1\|scaffold_213457 (39692-39507)
	5-272, gnl\|panTro1\|chr1 (129687024-129687213)
	5-272, gnl\|rheMac2\|chr1 (129590501-129590691)
	5-272, gnl\|rn3\|chr2 (190001091-190000901)
	5-272, gnl\|tetNig1\|chrUn_random (41028439-41028599)
	5-272, gnl\|xenTro1\|scaffold_96 (1452669-1452488)

	634-1102, gnl\|bosTau2\|chr3 (16410005-16410477)
	634-1102, gnl\|Hg17\|chr1 (147946570-147946102)
	634-1102, gnl\|Mm7\|chr3 (95012344-95012776)