Ss1.1-Mixc-0035c22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTGGACGCCGTCTACAAGAACGTGCCCTACTCCCAGCGGCCCAGGGCGGTGGACATGGA CCTGGAGTGGCGTCAAGGCCGGATCGCCCGGGTCGTGCTGCAGGACGAGGACATCACCAC TAAGATCGAGGGCGACTGGAAGCGGCTCAACACGCTGATGCACTACCAGGTGTCGGACAG ATCGGTGGTGGCTCTGGTCCCCAAGCAGACCTCCTCCTACAACATCCCTGCCTCCGCCAG CATCTCCCGGACGTCCATCAGCAGATACGACTCCTCCTTCAGGTACACAGGCAGTCCTGA CAGCCTGCGGTCTCGGGCCCCCATGATCACGCCAGACCTGGAGAGCGGGGTCAAGGTGTG GCATCTGGTGAAGAACCATGACCACGGGGACCAGAAGGAGGGTGACCGGGGCAGCAAGAT GGTGTCCGAGATCTACCTGACCCGGCTCCTGGCCACAAAGGGCACCCTGCAGAAGTTTGT GGATGACCTGTTCGAGACCTTGTTCAGCACTGTGCACCGGGGCAGCGCGCTCCCCCTGGC CATCAAGTACATGTTTGATTTCCTGGATGAGCAGGCAGACAGACACAGCATCCACGACAC AGATGTGCGGCACACCTGGAAGAGCAACTGCCTCCCCCTGCGCTTCTGGGTGAACGTGAT CAAGAACCCGCAGTTCGTGTTCGACATCCACAAGGGCAGCATCACGGACGCCTGCCTCTC GGTGGTGGCCCAGACCTTCATGGACTCCTGCTCGACCTCGGAGCACCGGCTGGGCAAGGA CTCGCCCTCCAACAAGCTGCTCTACGCCAAGGACATCCCCAGCTACAAGAGCTGGGTGGA GAGATACTACGCAGACATCGCCAAGCTCCCCGCCATCAGCGACCAGGACATGAACGCCTA CCTCGCGGAGCAGTCCCGCCTGCACGCCGTGGACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTGGACGCCGTCTACAAGAACGTGCCCTACTCCCAGCGGCCCAGGGCGGTGGACATGGA CCTGGAGTGGCGTCAAGGCCGGATCGCCCGGGTCGTGCTGCAGGACGAGGACATCACCAC TAAGATCGAGGGCGACTGGAAGCGGCTCAACACGCTGATGCACTACCAGGTGTCGGACAG ATCGGTGGTGGCTCTGGTCCCCAAGCAGACCTCCTCCTACAACATCCCTGCCTCCGCCAG CATCTCCCGGACGTCCATCAGCAGATACGACTCCTCCTTCAGGTACACAGGCAGTCCTGA CAGCCTGCGGTCTCGGGCCCCCATGATCACGCCAGACCTGGAGAGCGGGGTCAAGGTGTG GCATCTGGTGAAGAACCATGACCACGGGGACCAGAAGGAGGGTGACCGGGGCAGCAAGAT GGTGTCCGAGATCTACCTGACCCGGCTCCTGGCCACAAAGGGCACCCTGCAGAAGTTTGT GGATGACCTGTTCGAGACCTTGTTCAGCACTGTGCACCGGGGCAGCGCGCTCCCCCTGGC CATCAAGTACATGTTTGATTTCCTGGATGAGCAGGCAGACAGACACAGCATCCACGACAC AGATGTGCGGCACACCTGGAAGAGCAACTGCCTCCCCCTGCGCTTCTGGGTGAACGTGAT CAAGAACCCGCAGTTCGTGTTCGACATCCACAAGGGCAGCATCACGGACGCCTGCCTCTC GGTGGTGGCCCAGACCTTCATGGACTCCTGCTCGACCTCGGAGCACCGGCTGGGCAAGGA CTCGCCCTCCAACAAGCTGCTCTACGCCAAGGACATCCCCAGCTACAAGAGCTGGGTGGA GAGATACTACGCAGACATCGCCAAGCTCCCCGCCATCAGCGACCAGGACATGAACGCCTA CCTCGCGGAGCAGTCCCGCCTGCACGCCGTGGACTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 712-843, - strand, RNAz p=0.967387 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 712-843, - strand, RNAz p=0.967387 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 25-172, gnl|bosTau2|chrX (14703400-14703253) | |
| 25-172, gnl|canFam2|chr7 (9834460-9834550) | |
| 25-172, gnl|danRer3|chr4 (16818043-16817953) | |
| 25-172, gnl|dasNov1|scaffold_666 (47689-47779) | |
| 25-172, gnl|echTel1|scaffold_319616 (41060-41150) | |
| 25-172, gnl|fr1|chrUn (82767452-82767362) | |
| 25-172, gnl|galGal2|chr26 (1345658-1345748) | |
| 25-172, gnl|hg17|chr1 (204600110-204600200) | |
| 25-172, gnl|loxAfr1|scaffold_717 (145866-145776) | |
| 25-172, gnl|mm7|chr1 (194355441-194355351) | |
| 25-172, gnl|monDom2|scaffold_13 (10296772-10296862) | |
| 25-172, gnl|oryCun1|scaffold_192411 (5228-5138) | |
| 25-172, gnl|panTro1|chr1 (188204843-188204933) | |
| 25-172, gnl|rheMac2|chr1 (162341072-162340982) | |
| 25-172, gnl|rn3|chr13 (110930909-110930819) | |
| 25-172, gnl|tetNig1|chr9 (9548024-9547934) | |
| 25-172, gnl|xenTro1|scaffold_393 (85734-85644) | |
| 279-461, gnl|bosTau2|chr4 (51579979-51580161) | |
| 279-461, gnl|canFam2|chr14 (8040512-8040284) | |
| 279-461, gnl|danRer3|chr4 (16822299-16822081) | |
| 279-461, gnl|dasNov1|scaffold_10418 (63172-63400) | |
| 279-461, gnl|echTel1|scaffold_295631 (6706-6908) | |
| 279-461, gnl|fr1|chrUn (125426106-125426325) | |
| 279-461, gnl|galGal2|chr1 (875830-876061) | |
| 279-461, gnl|hg17|chr7 (131288511-131288745) | |
| 279-461, gnl|Hg17|chr7 (131288705-131288523) | |
| 279-461, gnl|loxAfr1|scaffold_50624 (1233-1461) | |
| 279-461, gnl|mm7|chr6 (32094610-32094846) | |
| 279-461, gnl|Mm7|chr6 (32094804-32094622) | |
| 279-461, gnl|monDom2|scaffold_22 (12160948-12160721) | |
| 279-461, gnl|oryCun1|scaffold_188422 (863-654) | |
| 279-461, gnl|panTro1|chr6 (133891265-133891499) | |
| 279-461, gnl|rheMac2|chr3 (169539035-169539269) | |
| 279-461, gnl|rn3|chr4 (59543667-59543903) | |
| 279-461, gnl|tetNig1|chr19 (2910768-2910573) | |
| 279-461, gnl|xenTro1|scaffold_20 (1208541-1208768) | |
| 627-843, gnl|bosTau2|chr4 (51585560-51585776) | |
| 627-843, gnl|Hg17|chr7 (131282829-131282613) | |
| 627-843, gnl|Mm7|chr6 (32089271-32089055) | |
| 712-830, gnl|bosTau2|chr24 (37788797-37788915) | |
| 712-830, gnl|Hg17|chr3 (128234009-128234127) | |
| 712-830, gnl|Mm7|chr6 (89396081-89395963) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-172, gnl|bosTau2|chrX (14703400-14703253) | |
| 25-172, gnl|canFam2|chr7 (9834460-9834550) | |
| 25-172, gnl|danRer3|chr4 (16818043-16817953) | |
| 25-172, gnl|dasNov1|scaffold_666 (47689-47779) | |
| 25-172, gnl|echTel1|scaffold_319616 (41060-41150) | |
| 25-172, gnl|fr1|chrUn (82767452-82767362) | |
| 25-172, gnl|galGal2|chr26 (1345658-1345748) | |
| 25-172, gnl|hg17|chr1 (204600110-204600200) | |
| 25-172, gnl|loxAfr1|scaffold_717 (145866-145776) | |
| 25-172, gnl|mm7|chr1 (194355441-194355351) | |
| 25-172, gnl|monDom2|scaffold_13 (10296772-10296862) | |
| 25-172, gnl|oryCun1|scaffold_192411 (5228-5138) | |
| 25-172, gnl|panTro1|chr1 (188204843-188204933) | |
| 25-172, gnl|rheMac2|chr1 (162341072-162340982) | |
| 25-172, gnl|rn3|chr13 (110930909-110930819) | |
| 25-172, gnl|tetNig1|chr9 (9548024-9547934) | |
| 25-172, gnl|xenTro1|scaffold_393 (85734-85644) | |
| 279-461, gnl|bosTau2|chr4 (51579979-51580161) | |
| 279-461, gnl|canFam2|chr14 (8040512-8040284) | |
| 279-461, gnl|danRer3|chr4 (16822299-16822081) | |
| 279-461, gnl|dasNov1|scaffold_10418 (63172-63400) | |
| 279-461, gnl|echTel1|scaffold_295631 (6706-6908) | |
| 279-461, gnl|fr1|chrUn (125426106-125426325) | |
| 279-461, gnl|galGal2|chr1 (875830-876061) | |
| 279-461, gnl|hg17|chr7 (131288511-131288745) | |
| 279-461, gnl|Hg17|chr7 (131288705-131288523) | |
| 279-461, gnl|loxAfr1|scaffold_50624 (1233-1461) | |
| 279-461, gnl|mm7|chr6 (32094610-32094846) | |
| 279-461, gnl|Mm7|chr6 (32094804-32094622) | |
| 279-461, gnl|monDom2|scaffold_22 (12160948-12160721) | |
| 279-461, gnl|oryCun1|scaffold_188422 (863-654) | |
| 279-461, gnl|panTro1|chr6 (133891265-133891499) | |
| 279-461, gnl|rheMac2|chr3 (169539035-169539269) | |
| 279-461, gnl|rn3|chr4 (59543667-59543903) | |
| 279-461, gnl|tetNig1|chr19 (2910768-2910573) | |
| 279-461, gnl|xenTro1|scaffold_20 (1208541-1208768) | |
| 627-843, gnl|bosTau2|chr4 (51585560-51585776) | |
| 627-843, gnl|Hg17|chr7 (131282829-131282613) | |
| 627-843, gnl|Mm7|chr6 (32089271-32089055) | |
| 712-830, gnl|bosTau2|chr24 (37788797-37788915) | |
| 712-830, gnl|Hg17|chr3 (128234009-128234127) | |
| 712-830, gnl|Mm7|chr6 (89396081-89395963) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.120048) |