Ss1.1-Mixc-0035e17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGTCGGGCGAGTCGGCTCCTTTGGTTCCTCTCCGCCGGGATTAGTCTCGACCTAT ACTGGCGGCCCCTTGGCTAACGAGCTAACGTCGGGAAACGGCGGGGCCGCGACAGGCGAC GACGAGGACGGGCAGAACCTTTGGTCCTGCATCCTCAGCGAGGTCTCCACCCGCTCGCGC TCCAAGCTCCCCGCGGGGAAGAACGTACTGCTGCTGGGTGAAGATGGAGCTGGAAAAACA AGCTTGATAAGAAAAATTCAGGGAATAGAGGAGTACAAGAAAGGCAGAGGATTGGAATAT TTGTACTTAAATGTTCATGATGAAGACAGGGATGATCAAACAAGATGTAATGTATGGATC TTAGATGGAGACCCGTATCACAAAGGCCTCCTTAAATTTTCACTGGATGCCATTTCTCTG AAGGACACTCTAGTTATGCTGGTTGTTGATATGTCAAAGCCTTGGACTGCTTTGGATTCG TTACAGAAATGGGCAAGTGTTGTTAGAGAACATATTGACAAATTGAAAATTCCTCCCGAA GAAATGAAAGAAATGGAACAAAAGTTGATTAGAGACTTCCAAGAATATGTAGAGCCAGGA GAAGATTTCCCAGCTTCTCCTCAGAGAAGAAATACTGTGTCACAGGAAGACAAAGACGAC AGTGTGGTTTTACCTCTGGGTGCAGACACACTCACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGTCGGGCGAGTCGGCTCCTTTGGTTCCTCTCCGCCGGGATTAGTCTCGACCTAT ACTGGCGGCCCCTTGGCTAACGAGCTAACGTCGGGAAACGGCGGGGCCGCGACAGGCGAC GACGAGGACGGGCAGAACCTTTGGTCCTGCATCCTCAGCGAGGTCTCCACCCGCTCGCGC TCCAAGCTCCCCGCGGGGAAGAACGTACTGCTGCTGGGTGAAGATGGAGCTGGAAAAACA AGCTTGATAAGAAAAATTCAGGGAATAGAGGAGTACAAGAAAGGCAGAGGATTGGAATAT TTGTACTTAAATGTTCATGATGAAGACAGGGATGATCAAACAAGATGTAATGTATGGATC TTAGATGGAGACCCGTATCACAAAGGCCTCCTTAAATTTTCACTGGATGCCATTTCTCTG AAGGACACTCTAGTTATGCTGGTTGTTGATATGTCAAAGCCTTGGACTGCTTTGGATTCG TTACAGAAATGGGCAAGTGTTGTTAGAGAACATATTGACAAATTGAAAATTCCTCCCGAA GAAATGAAAGAAATGGAACAAAAGTTGATTAGAGACTTCCAAGAATATGTAGAGCCAGGA GAAGATTTCCCAGCTTCTCCTCAGAGAAGAAATACTGTGTCACAGGAAGACAAAGACGAC AGTGTGGTTTTACCTCTGGGTGCAGACACACTCACA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 1-145, gnl|bosTau2|chr22 (11052328-11052184) | |
| 1-145, gnl|Hg17|chr3 (32587263-32587119) | |
| 1-145, gnl|Mm7|chr9 (114339981-114340125) | |
| 217-332, gnl|bosTau2|chr22 (11017417-11017302) | |
| 217-332, gnl|canFam2|chr23 (15300784-15300684) | |
| 217-332, gnl|danRer3|chr19 (16363130-16363230) | |
| 217-332, gnl|dasNov1|scaffold_62640 (4166-4075) | |
| 217-332, gnl|echTel1|scaffold_292542 (5999-5903) | |
| 217-332, gnl|fr1|chrUn (209153983-209153883) | |
| 217-332, gnl|galGal2|chr2 (39581558-39581658) | |
| 217-332, gnl|hg17|chr3 (32562341-32562441) | |
| 217-332, gnl|Hg17|chr3 (32562462-32562347) | |
| 217-332, gnl|loxAfr1|scaffold_25564 (26166-26267) | |
| 217-332, gnl|mm7|chr9 (114356272-114356172) | |
| 217-332, gnl|Mm7|chr9 (114356149-114356264) | |
| 217-332, gnl|monDom2|scaffold_7 (88038843-88038946) | |
| 217-332, gnl|oryCun1|scaffold_204984 (22844-22744) | |
| 217-332, gnl|panTro1|chr2 (33557926-33558026) | |
| 217-332, gnl|rheMac2|chr2 (175014544-175014644) | |
| 217-332, gnl|rn3|chr8 (119140846-119140746) | |
| 217-332, gnl|tetNig1|chr5 (7825175-7825275) | |
| 217-332, gnl|xenTro1|scaffold_319 (1274271-1274171) | |
| 334-565, gnl|bosTau2|chr18 (26711362-26711131) | |
| 334-565, gnl|canFam2|chr5 (85555272-85555013) | |
| 334-565, gnl|danRer3|chr7 (36218364-36218606) | |
| 334-565, gnl|dasNov1|scaffold_72656 (1379-1630) | |
| 334-565, gnl|echTel1|scaffold_255456 (6927-6676) | |
| 334-565, gnl|fr1|chrUn (209154294-209154027) | |
| 334-565, gnl|galGal2|chr11 (11669880-11669633) | |
| 334-565, gnl|hg17|chr16 (65333837-65334092) | |
| 334-565, gnl|Hg17|chr16 (65334073-65333842) | |
| 334-565, gnl|loxAfr1|scaffold_12224 (55897-56148) | |
| 334-565, gnl|mm7|chr8 (103036661-103036914) | |
| 334-565, gnl|Mm7|chr8 (103036897-103036666) | |
| 334-565, gnl|monDom2|scaffold_23 (20837842-20837593) | |
| 334-565, gnl|oryCun1|scaffold_109944 (10812-11062) | |
| 334-565, gnl|panTro1|chr18 (59574697-59574952) | |
| 334-565, gnl|rheMac2|chr20 (65029978-65030233) | |
| 334-565, gnl|rn3|chr19 (474601-474350) | |
| 334-565, gnl|tetNig1|chr5 (7824870-7825124) | |
| 334-565, gnl|xenTro1|scaffold_13 (1814924-1815177) | |
| 566-696, gnl|bosTau2|chr22 (11014291-11014161) | |
| 566-696, gnl|canFam2|chr23 (15303801-15303663) | |
| 566-696, gnl|canFam2|chr23 (15303849-15303671) | |
| 566-696, gnl|danRer3|chr19 (16356158-16356304) | |
| 566-696, gnl|danRer3|chr19 (16356105-16356280) | |
| 566-696, gnl|dasNov1|scaffold_57527 (9408-9546) | |
| 566-696, gnl|dasNov1|scaffold_62640 (4558-4399) | |
| 566-696, gnl|echTel1|scaffold_292542 (6378-6210) | |
| 566-696, gnl|echTel1|scaffold_304199 (14621-14759) | |
| 566-696, gnl|fr1|chrUn (209157174-209157028) | |
| 566-696, gnl|fr1|chrUn (209157210-209157046) | |
| 566-696, gnl|galGal2|chr2 (39576430-39576568) | |
| 566-696, gnl|galGal2|chr2 (39576381-39576561) | |
| 566-696, gnl|hg17|chr3 (32557573-32557711) | |
| 566-696, gnl|Hg17|chr3 (32557702-32557572) | |
| 566-696, gnl|hg17|chr5 (30401255-30401438) | |
| 566-696, gnl|loxAfr1|scaffold_25564 (24075-24213) | |
| 566-696, gnl|loxAfr1|scaffold_25564 (24022-24205) | |
| 566-696, gnl|mm7|chr9 (114360372-114360232) | |
| 566-696, gnl|mm7|chr9 (114360409-114360238) | |
| 566-696, gnl|Mm7|chr9 (114360241-114360371) | |
| 566-696, gnl|monDom2|scaffold_7 (88034250-88034385) | |
| 566-696, gnl|monDom2|scaffold_7 (88034212-88034378) | |
| 566-696, gnl|oryCun1|scaffold_204984 (26850-26712) | |
| 566-696, gnl|oryCun1|scaffold_204984 (26897-26719) | |
| 566-696, gnl|panTro1|chr2 (33553060-33553198) | |
| 566-696, gnl|panTro1|chr4 (86979439-86979256) | |
| 566-696, gnl|rheMac2|chr20 (65023422-65023560) | |
| 566-696, gnl|rheMac2|chr20 (65023384-65023552) | |
| 566-696, gnl|rn3|chr8 (119144850-119144712) | |
| 566-696, gnl|rn3|chr8 (119144897-119144719) | |
| 566-696, gnl|tetNig1|chr5 (7822699-7822826) | |
| 566-696, gnl|tetNig1|chr5 (7822658-7822827) | |
| 566-696, gnl|xenTro1|scaffold_319 (1278295-1278160) | |
| 566-696, gnl|xenTro1|scaffold_319 (1278359-1278168) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-145, gnl|bosTau2|chr22 (11052328-11052184) | |
| 1-145, gnl|Hg17|chr3 (32587263-32587119) | |
| 1-145, gnl|Mm7|chr9 (114339981-114340125) | |
| 217-332, gnl|bosTau2|chr22 (11017417-11017302) | |
| 217-332, gnl|canFam2|chr23 (15300784-15300684) | |
| 217-332, gnl|danRer3|chr19 (16363130-16363230) | |
| 217-332, gnl|dasNov1|scaffold_62640 (4166-4075) | |
| 217-332, gnl|echTel1|scaffold_292542 (5999-5903) | |
| 217-332, gnl|fr1|chrUn (209153983-209153883) | |
| 217-332, gnl|galGal2|chr2 (39581558-39581658) | |
| 217-332, gnl|hg17|chr3 (32562341-32562441) | |
| 217-332, gnl|Hg17|chr3 (32562462-32562347) | |
| 217-332, gnl|loxAfr1|scaffold_25564 (26166-26267) | |
| 217-332, gnl|mm7|chr9 (114356272-114356172) | |
| 217-332, gnl|Mm7|chr9 (114356149-114356264) | |
| 217-332, gnl|monDom2|scaffold_7 (88038843-88038946) | |
| 217-332, gnl|oryCun1|scaffold_204984 (22844-22744) | |
| 217-332, gnl|panTro1|chr2 (33557926-33558026) | |
| 217-332, gnl|rheMac2|chr2 (175014544-175014644) | |
| 217-332, gnl|rn3|chr8 (119140846-119140746) | |
| 217-332, gnl|tetNig1|chr5 (7825175-7825275) | |
| 217-332, gnl|xenTro1|scaffold_319 (1274271-1274171) | |
| 334-565, gnl|bosTau2|chr18 (26711362-26711131) | |
| 334-565, gnl|canFam2|chr5 (85555272-85555013) | |
| 334-565, gnl|danRer3|chr7 (36218364-36218606) | |
| 334-565, gnl|dasNov1|scaffold_72656 (1379-1630) | |
| 334-565, gnl|echTel1|scaffold_255456 (6927-6676) | |
| 334-565, gnl|fr1|chrUn (209154294-209154027) | |
| 334-565, gnl|galGal2|chr11 (11669880-11669633) | |
| 334-565, gnl|hg17|chr16 (65333837-65334092) | |
| 334-565, gnl|Hg17|chr16 (65334073-65333842) | |
| 334-565, gnl|loxAfr1|scaffold_12224 (55897-56148) | |
| 334-565, gnl|mm7|chr8 (103036661-103036914) | |
| 334-565, gnl|Mm7|chr8 (103036897-103036666) | |
| 334-565, gnl|monDom2|scaffold_23 (20837842-20837593) | |
| 334-565, gnl|oryCun1|scaffold_109944 (10812-11062) | |
| 334-565, gnl|panTro1|chr18 (59574697-59574952) | |
| 334-565, gnl|rheMac2|chr20 (65029978-65030233) | |
| 334-565, gnl|rn3|chr19 (474601-474350) | |
| 334-565, gnl|tetNig1|chr5 (7824870-7825124) | |
| 334-565, gnl|xenTro1|scaffold_13 (1814924-1815177) | |
| 566-696, gnl|bosTau2|chr22 (11014291-11014161) | |
| 566-696, gnl|canFam2|chr23 (15303801-15303663) | |
| 566-696, gnl|canFam2|chr23 (15303849-15303671) | |
| 566-696, gnl|danRer3|chr19 (16356158-16356304) | |
| 566-696, gnl|danRer3|chr19 (16356105-16356280) | |
| 566-696, gnl|dasNov1|scaffold_57527 (9408-9546) | |
| 566-696, gnl|dasNov1|scaffold_62640 (4558-4399) | |
| 566-696, gnl|echTel1|scaffold_292542 (6378-6210) | |
| 566-696, gnl|echTel1|scaffold_304199 (14621-14759) | |
| 566-696, gnl|fr1|chrUn (209157174-209157028) | |
| 566-696, gnl|fr1|chrUn (209157210-209157046) | |
| 566-696, gnl|galGal2|chr2 (39576430-39576568) | |
| 566-696, gnl|galGal2|chr2 (39576381-39576561) | |
| 566-696, gnl|hg17|chr3 (32557573-32557711) | |
| 566-696, gnl|Hg17|chr3 (32557702-32557572) | |
| 566-696, gnl|hg17|chr5 (30401255-30401438) | |
| 566-696, gnl|loxAfr1|scaffold_25564 (24075-24213) | |
| 566-696, gnl|loxAfr1|scaffold_25564 (24022-24205) | |
| 566-696, gnl|mm7|chr9 (114360372-114360232) | |
| 566-696, gnl|mm7|chr9 (114360409-114360238) | |
| 566-696, gnl|Mm7|chr9 (114360241-114360371) | |
| 566-696, gnl|monDom2|scaffold_7 (88034250-88034385) | |
| 566-696, gnl|monDom2|scaffold_7 (88034212-88034378) | |
| 566-696, gnl|oryCun1|scaffold_204984 (26850-26712) | |
| 566-696, gnl|oryCun1|scaffold_204984 (26897-26719) | |
| 566-696, gnl|panTro1|chr2 (33553060-33553198) | |
| 566-696, gnl|panTro1|chr4 (86979439-86979256) | |
| 566-696, gnl|rheMac2|chr20 (65023422-65023560) | |
| 566-696, gnl|rheMac2|chr20 (65023384-65023552) | |
| 566-696, gnl|rn3|chr8 (119144850-119144712) | |
| 566-696, gnl|rn3|chr8 (119144897-119144719) | |
| 566-696, gnl|tetNig1|chr5 (7822699-7822826) | |
| 566-696, gnl|tetNig1|chr5 (7822658-7822827) | |
| 566-696, gnl|xenTro1|scaffold_319 (1278295-1278160) | |
| 566-696, gnl|xenTro1|scaffold_319 (1278359-1278168) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nep (0.183925) | |
| ill (0.175593) | |
| cst (0.140036) | |
| med (0.116252) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| ill (0.175593) | |
| cst (0.140036) | |
| med (0.116252) |