Non-Coding RNA Search

Ss1.1-Mixc-0035f12.3

Sequence:


               
               TAACTGATATCTTGAAAGCTGTGCTTCAAGTTGACTTAGAGGTAAACCTATTAGGAAAAT
AAGTGGCCCGCTTATAGACTGAAGCCTCTATTACTTCAAAAATATGCTCTACATTCTTTG
GAATCTTAAGAATAAAATATTTCTGTCAATACTCACTTCCATTCAAGTTAGGACTAATGG
ATCCTAGCATGGCAAATAGCTGAAGAATGGAGAAAACTGGATAGCTGAGAATCCAGATAA
TTCTTAGCACTCTGAGCAACCTCAAGTACAGCCATCCAAGCCAGTAATTACCTTGCTGCA
TTATTTGTTTGTGAAATTTGCTTCTTGTCTGTACCCTTGAATAAAATTTCATGAGGCTCC
TTATTAATGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACTGATATCTTGAAAGCTGTGCTTCAAGTTGACTTAGAGGTAAACCTATTAGGAAAAT
AAGTGGCCCGCTTATAGACTGAAGCCTCTATTACTTCAAAAATATGCTCTACATTCTTTG
GAATCTTAAGAATAAAATATTTCTGTCAATACTCACTTCCATTCAAGTTAGGACTAATGG
ATCCTAGCATGGCAAATAGCTGAAGAATGGAGAAAACTGGATAGCTGAGAATCCAGATAA
TTCTTAGCACTCTGAGCAACCTCAAGTACAGCCATCCAAGCCAGTAATTACCTTGCTGCA
TTATTTGTTTGTGAAATTTGCTTCTTGTCTGTACCCTTGAATAAAATTTCATGAGGCTCC
TTATTAATGTAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               123-276, + strand, RNAz p=0.750723
               

               
               163-282, - strand, RNAz p=0.988538

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               123-276, + strand, RNAz p=0.750723
               

               
               163-282, - strand, RNAz p=0.988538

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               4-372, gnl|bosTau2|chr2 (50994399-50994028)
               

               
               4-372, gnl|canFam2|chr37 (13020929-13021205)
               

               
               4-372, gnl|echTel1|scaffold_277931 (82014-81784)
               

               
               4-372, gnl|hg17|chr2 (201517113-201517423)
               

               
               4-372, gnl|Hg17|chr2 (201517185-201517559)
               

               
               4-372, gnl|loxAfr1|scaffold_1178 (144740-145061)
               

               
               4-372, gnl|monDom2|scaffold_64 (9053764-9054135)
               

               
               4-372, gnl|oryCun1|scaffold_212053 (205644-205958)
               

               
               4-372, gnl|panTro1|chr13 (91497350-91497660)
               

               
               4-372, gnl|rheMac2|chr12 (64580147-64580466)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-372, gnl|bosTau2|chr2 (50994399-50994028)
               

               
               4-372, gnl|canFam2|chr37 (13020929-13021205)
               

               
               4-372, gnl|echTel1|scaffold_277931 (82014-81784)
               

               
               4-372, gnl|hg17|chr2 (201517113-201517423)
               

               
               4-372, gnl|Hg17|chr2 (201517185-201517559)
               

               
               4-372, gnl|loxAfr1|scaffold_1178 (144740-145061)
               

               
               4-372, gnl|monDom2|scaffold_64 (9053764-9054135)
               

               
               4-372, gnl|oryCun1|scaffold_212053 (205644-205958)
               

               
               4-372, gnl|panTro1|chr13 (91497350-91497660)
               

               
               4-372, gnl|rheMac2|chr12 (64580147-64580466)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

	123-276, + strand, RNAz p=0.750723
	163-282, - strand, RNAz p=0.988538

	4-372, gnl\|bosTau2\|chr2 (50994399-50994028)
	4-372, gnl\|canFam2\|chr37 (13020929-13021205)
	4-372, gnl\|echTel1\|scaffold_277931 (82014-81784)
	4-372, gnl\|hg17\|chr2 (201517113-201517423)
	4-372, gnl\|Hg17\|chr2 (201517185-201517559)
	4-372, gnl\|loxAfr1\|scaffold_1178 (144740-145061)
	4-372, gnl\|monDom2\|scaffold_64 (9053764-9054135)
	4-372, gnl\|oryCun1\|scaffold_212053 (205644-205958)
	4-372, gnl\|panTro1\|chr13 (91497350-91497660)
	4-372, gnl\|rheMac2\|chr12 (64580147-64580466)