Ss1.1-Mixc-0035g20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAAGCCGGCTTGATCGGGCTCATTGGACCCCCGGGCGAACAGGGCGAAAAGGGTGACC GTGGCCTTCCCGGCCCCCAGGGCTCCTCTGGCCCTAAGGGGGAACAGGGCATCACCGGTC CTTCTGGCCCGATCGGGCCCCCGGGCCCCCCAGGCTTGCCGGGCCCCCCTGGTCCAAAAG GTGCTAAGGGCTCCTCGGGTCCAACTGGCCCCAAGGGTGAGGCAGGCCACCCTGGACCCC CCGGCCCGCCGGGCCCCCCCGGCGAGGTCATCCAGCCGCTGCCGATCCAGGCGTCCAGGA CGCGGCGGAACATCGACGCCAGCCAGCTGATGGACGAGGGGGAGGCCGAGAACTACATGG ACTACGCCGACGGCATGGAGGAGATCTTCGGCTCGCTCAACTCCCTGAAGCTGGAGATCG AGCAGATGAAGCGGCCGCTGGGCACGCAGCAGAACCCGGCGCGGACCTGCAAGGACCTGC AGCTCTGCCACCCCGACTTCCCGGACGGTGAATACTGGGTGGACCCGAACCAAGGCTGCT CCAGGGACTCCTTCAAAGTCTACTGCAACTTCACGGCCGGAGGGTCCACGTGCGTCTTCC CCGATAAGAAGTCCGAAGGGGCCAGAATCACTTCTTGGCCCAAAGAGAACCCGGGTTCCT GGTTCAGTGAATTCAAGCGCGGCAAACTGCTCTCCTACGTGGACGCCGAGGGCAACCCGG TGGGCGTGGTCCAGATGACCTTCCTGCGGCTGCTGAGCGCCTCTGCCCACCAGAACATCA CCTATAACTGCTACCAGTCGGTGGCCTGGCAGGACGCCGCCACGGGAGGCTACGACAAGG CCATGCGCTTCCTGGGCTCCAACGACGAGGAGATGTCCTACGACAACAGCCCCTACATCC GCGCCCTGGTGGACGGCTGCGCTACCAGGAAAGGGTACCAGAAGACGGTGCTGGAAATCG ACACCCCCAAGGTGGAGCAGGTGCCCATCGTGGACATCATGTTCAACGACTTCGGGGACG CATCACAGAAATTTGGATTTGAAGTGGGGCCGGCTTGCTTCCTGGGCTAGGAGCCGCGAG CCCGGCCCCCAAGAGCAACCTCGTGACCTCAGCACGCCGCCTGGGGGTGTCCTGGACCGC GAAGGCCCCTCGTCCCTCCCCACCTCGTCTGTGCCTCGGCCCCCCGGGCCGCCCCACAGC AGAGACAGCAAAGGGAAGAGCCGCGCCCCCGCCCCGGAGCCGAATCACATGACCTAGACG CCCCAGAGCCTCCCGCTCCTCCAGCCCGGCCCCGTCTCCACCGCACTCCCCAGGGGCACG GAGGGGGCCCACGCCGCTGGCCCCGGTCGGCGGCTCTGAGAGTCCGCAGCGGTGAGGGCG AGGCTGCAGCATTGGAGATCTCGGTTTTTTGTCTTTTTCATTTCAACTTGAAGATGCCTG TTTCCCCTGACCTTCAAAAATTGTTCCGAGGCCAGCCTTGGAAAGGTCGCCCCGTGCTCC AGAGTCTCCGTGTTTAACAAGATCCATTCACAGGCCAAATGTCATTCTGCATGTGCCTTT CCGATGGATTAAAGGTGCTTTTGTTTTTGTGAGTTTTAAGTAAATATTTGTATTGTATTG TCATAAATGTTCAGCGTCCCTGACTTTCAATCCCGCCTGTGAGGCCGGCTTCACACCCAG GGGAGAGTTGGAGGACACGGGGGGAGCTGTCTGTTCCGGGATGCAGCCCACACCCCCGCC CACTCGAGCACGTACCCCGTATTGGAAATTTGCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAAGCCGGCTTGATCGGGCTCATTGGACCCCCGGGCGAACAGGGCGAAAAGGGTGACC GTGGCCTTCCCGGCCCCCAGGGCTCCTCTGGCCCTAAGGGGGAACAGGGCATCACCGGTC CTTCTGGCCCGATCGGGCCCCCGGGCCCCCCAGGCTTGCCGGGCCCCCCTGGTCCAAAAG GTGCTAAGGGCTCCTCGGGTCCAACTGGCCCCAAGGGTGAGGCAGGCCACCCTGGACCCC CCGGCCCGCCGGGCCCCCCCGGCGAGGTCATCCAGCCGCTGCCGATCCAGGCGTCCAGGA CGCGGCGGAACATCGACGCCAGCCAGCTGATGGACGAGGGGGAGGCCGAGAACTACATGG ACTACGCCGACGGCATGGAGGAGATCTTCGGCTCGCTCAACTCCCTGAAGCTGGAGATCG AGCAGATGAAGCGGCCGCTGGGCACGCAGCAGAACCCGGCGCGGACCTGCAAGGACCTGC AGCTCTGCCACCCCGACTTCCCGGACGGTGAATACTGGGTGGACCCGAACCAAGGCTGCT CCAGGGACTCCTTCAAAGTCTACTGCAACTTCACGGCCGGAGGGTCCACGTGCGTCTTCC CCGATAAGAAGTCCGAAGGGGCCAGAATCACTTCTTGGCCCAAAGAGAACCCGGGTTCCT GGTTCAGTGAATTCAAGCGCGGCAAACTGCTCTCCTACGTGGACGCCGAGGGCAACCCGG TGGGCGTGGTCCAGATGACCTTCCTGCGGCTGCTGAGCGCCTCTGCCCACCAGAACATCA CCTATAACTGCTACCAGTCGGTGGCCTGGCAGGACGCCGCCACGGGAGGCTACGACAAGG CCATGCGCTTCCTGGGCTCCAACGACGAGGAGATGTCCTACGACAACAGCCCCTACATCC GCGCCCTGGTGGACGGCTGCGCTACCAGGAAAGGGTACCAGAAGACGGTGCTGGAAATCG ACACCCCCAAGGTGGAGCAGGTGCCCATCGTGGACATCATGTTCAACGACTTCGGGGACG CATCACAGAAATTTGGATTTGAAGTGGGGCCGGCTTGCTTCCTGGGCTAGGAGCCGCGAG CCCGGCCCCCAAGAGCAACCTCGTGACCTCAGCACGCCGCCTGGGGGTGTCCTGGACCGC GAAGGCCCCTCGTCCCTCCCCACCTCGTCTGTGCCTCGGCCCCCCGGGCCGCCCCACAGC AGAGACAGCAAAGGGAAGAGCCGCGCCCCCGCCCCGGAGCCGAATCACATGACCTAGACG CCCCAGAGCCTCCCGCTCCTCCAGCCCGGCCCCGTCTCCACCGCACTCCCCAGGGGCACG GAGGGGGCCCACGCCGCTGGCCCCGGTCGGCGGCTCTGAGAGTCCGCAGCGGTGAGGGCG AGGCTGCAGCATTGGAGATCTCGGTTTTTTGTCTTTTTCATTTCAACTTGAAGATGCCTG TTTCCCCTGACCTTCAAAAATTGTTCCGAGGCCAGCCTTGGAAAGGTCGCCCCGTGCTCC AGAGTCTCCGTGTTTAACAAGATCCATTCACAGGCCAAATGTCATTCTGCATGTGCCTTT CCGATGGATTAAAGGTGCTTTTGTTTTTGTGAGTTTTAAGTAAATATTTGTATTGTATTG TCATAAATGTTCAGCGTCCCTGACTTTCAATCCCGCCTGTGAGGCCGGCTTCACACCCAG GGGAGAGTTGGAGGACACGGGGGGAGCTGTCTGTTCCGGGATGCAGCCCACACCCCCGCC CACTCGAGCACGTACCCCGTATTGGAAATTTGCCCA |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 227-509, gnl|bosTau2|chr11 (86744142-86743859) | |
| 227-509, gnl|Hg17|chr9 (134942363-134942648) | |
| 227-509, gnl|Mm7|chr2 (28031889-28032173) | |
| 689-922, gnl|bosTau2|chr11 (86733701-86733468) | |
| 689-922, gnl|canFam2|chr20 (54077089-54076829) | |
| 689-922, gnl|canFam2|chr9 (54188773-54189030) | |
| 689-922, gnl|danRer3|chr19 (2004503-2004747) | |
| 689-922, gnl|danRer3|chr19 (2004749-2004501) | |
| 689-922, gnl|dasNov1|scaffold_109669 (928-1189) | |
| 689-922, gnl|dasNov1|scaffold_280901 (569-830) | |
| 689-922, gnl|echTel1|scaffold_235269 (3435-3195) | |
| 689-922, gnl|echTel1|scaffold_235269 (3192-3439) | |
| 689-922, gnl|fr1|chrUn (183220679-183220922) | |
| 689-922, gnl|fr1|chrUn (30934582-30934330) | |
| 689-922, gnl|galGal2|chr17 (2867692-2867947) | |
| 689-922, gnl|galGal2|chr17 (2867956-2867706) | |
| 689-922, gnl|hg17|chr19 (9932308-9932569) | |
| 689-922, gnl|hg17|chr9 (134952750-134953007) | |
| 689-922, gnl|Hg17|chr9 (134952761-134952994) | |
| 689-922, gnl|loxAfr1|scaffold_44595 (9667-9930) | |
| 689-922, gnl|loxAfr1|scaffold_44595 (9944-9686) | |
| 689-922, gnl|mm7|chr2 (28039892-28040147) | |
| 689-922, gnl|Mm7|chr2 (28039901-28040134) | |
| 689-922, gnl|mm7|chr9 (20640843-20641105) | |
| 689-922, gnl|monDom2|scaffold_106 (1568081-1568343) | |
| 689-922, gnl|monDom2|scaffold_51 (12340101-12340364) | |
| 689-922, gnl|oryCun1|scaffold_204586 (55374-55627) | |
| 689-922, gnl|oryCun1|scaffold_204641 (61345-61084) | |
| 689-922, gnl|panTro1|chr11 (119840700-119840957) | |
| 689-922, gnl|panTro1|chr20 (10296816-10297073) | |
| 689-922, gnl|rheMac2|chr15 (3462532-3462275) | |
| 689-922, gnl|rheMac2|chr19 (9762408-9762669) | |
| 689-922, gnl|rn3|chr3 (6966815-6967067) | |
| 689-922, gnl|rn3|chr8 (19790058-19790320) | |
| 689-922, gnl|tetNig1|chr18 (8737827-8738083) | |
| 689-922, gnl|tetNig1|chrUn_random (2578707-2578448) | |
| 689-922, gnl|xenTro1|scaffold_56 (2495563-2495323) | |
| 689-922, gnl|xenTro1|scaffold_95 (1359744-1359488) | |
| 924-1774, gnl|bosTau2|chr11 (86728044-86727217) | |
| 924-1774, gnl|Hg17|chr9 (134959948-134960866) | |
| 924-1774, gnl|Mm7|chr2 (28044181-28045040) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 227-509, gnl|bosTau2|chr11 (86744142-86743859) | |
| 227-509, gnl|Hg17|chr9 (134942363-134942648) | |
| 227-509, gnl|Mm7|chr2 (28031889-28032173) | |
| 689-922, gnl|bosTau2|chr11 (86733701-86733468) | |
| 689-922, gnl|canFam2|chr20 (54077089-54076829) | |
| 689-922, gnl|canFam2|chr9 (54188773-54189030) | |
| 689-922, gnl|danRer3|chr19 (2004503-2004747) | |
| 689-922, gnl|danRer3|chr19 (2004749-2004501) | |
| 689-922, gnl|dasNov1|scaffold_109669 (928-1189) | |
| 689-922, gnl|dasNov1|scaffold_280901 (569-830) | |
| 689-922, gnl|echTel1|scaffold_235269 (3435-3195) | |
| 689-922, gnl|echTel1|scaffold_235269 (3192-3439) | |
| 689-922, gnl|fr1|chrUn (183220679-183220922) | |
| 689-922, gnl|fr1|chrUn (30934582-30934330) | |
| 689-922, gnl|galGal2|chr17 (2867692-2867947) | |
| 689-922, gnl|galGal2|chr17 (2867956-2867706) | |
| 689-922, gnl|hg17|chr19 (9932308-9932569) | |
| 689-922, gnl|hg17|chr9 (134952750-134953007) | |
| 689-922, gnl|Hg17|chr9 (134952761-134952994) | |
| 689-922, gnl|loxAfr1|scaffold_44595 (9667-9930) | |
| 689-922, gnl|loxAfr1|scaffold_44595 (9944-9686) | |
| 689-922, gnl|mm7|chr2 (28039892-28040147) | |
| 689-922, gnl|Mm7|chr2 (28039901-28040134) | |
| 689-922, gnl|mm7|chr9 (20640843-20641105) | |
| 689-922, gnl|monDom2|scaffold_106 (1568081-1568343) | |
| 689-922, gnl|monDom2|scaffold_51 (12340101-12340364) | |
| 689-922, gnl|oryCun1|scaffold_204586 (55374-55627) | |
| 689-922, gnl|oryCun1|scaffold_204641 (61345-61084) | |
| 689-922, gnl|panTro1|chr11 (119840700-119840957) | |
| 689-922, gnl|panTro1|chr20 (10296816-10297073) | |
| 689-922, gnl|rheMac2|chr15 (3462532-3462275) | |
| 689-922, gnl|rheMac2|chr19 (9762408-9762669) | |
| 689-922, gnl|rn3|chr3 (6966815-6967067) | |
| 689-922, gnl|rn3|chr8 (19790058-19790320) | |
| 689-922, gnl|tetNig1|chr18 (8737827-8738083) | |
| 689-922, gnl|tetNig1|chrUn_random (2578707-2578448) | |
| 689-922, gnl|xenTro1|scaffold_56 (2495563-2495323) | |
| 689-922, gnl|xenTro1|scaffold_95 (1359744-1359488) | |
| 924-1774, gnl|bosTau2|chr11 (86728044-86727217) | |
| 924-1774, gnl|Hg17|chr9 (134959948-134960866) | |
| 924-1774, gnl|Mm7|chr2 (28044181-28045040) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| amn (1.25313) | |
| pla (1.06938) | |
| eep (0.980512) | |
| elu (0.385356) | |
| eye (0.341006) | |
| cly (0.241284) | |
| eru (0.240096) | |
| nep (0.183925) | |
| ton (0.1755) | |
| nco (0.161734) | |
| csp (0.161186) | |
| nca (0.136874) | |
| ese (0.126502) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (1.25313) | |
| pla (1.06938) | |
| eep (0.980512) | |
| elu (0.385356) | |
| eye (0.341006) | |
| cly (0.241284) | |
| eru (0.240096) | |
| nep (0.183925) | |
| ton (0.1755) | |
| nco (0.161734) | |
| csp (0.161186) | |
| nca (0.136874) | |
| ese (0.126502) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |