Non-Coding RNA Search

Ss1.1-Mixc-0035h06.3

Sequence:


               
               AAGGGGTGCATTTAATAGCTATGGAGATACAATGTTTTCCTCTCTTGGAAGCTAATTAGC
CCACCCAGGTATTGAACCTATAGCTTGGGCCTTAATTAGCATTGTATTCTAATCAAAGGA
CTCTTTCCAAAACATATTTATAGCTTTCTAACCTACACAGTCTATACATAGATGCATATT
TTACCCCCAGCTGGCTAGAGGTTCATTTGTTGTAAATGCTGTATAGGGGTTTGTTTTTTC
CTTTCTTTACTTCTCCGGGTTTGGGTTTTGTTGGGGTTTTTTGGATGGATTTACCCTGTC
TTAGGAAGTTTGAGAAGAATCCTCTGTAGCCCGAGCTCCCCTCCCTTGCTGTAAACCACA
TGGCCTGTGCTGTCATGGGAGGTAGGATGGCGGCATCACCATTGCATTCCCATTGGACTC
ATGCACCTCCCTGATGGTTTTGTTTTGTTTTTTGTTTTTGCTTCTTTTCCAGAGTGTGGA
AAGTCTACAGTGCAGAAAGGCTTTAACCTGCCAGTTGATTTGAAATAACTTTCCCCTGCG
CAGGGCCGTATGCATCCTGCCAAGCTGCGTTATATTCTGTACTGTGTACAATAAAGAAGT
TTGCTTTCAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGGTGCATTTAATAGCTATGGAGATACAATGTTTTCCTCTCTTGGAAGCTAATTAGC
CCACCCAGGTATTGAACCTATAGCTTGGGCCTTAATTAGCATTGTATTCTAATCAAAGGA
CTCTTTCCAAAACATATTTATAGCTTTCTAACCTACACAGTCTATACATAGATGCATATT
TTACCCCCAGCTGGCTAGAGGTTCATTTGTTGTAAATGCTGTATAGGGGTTTGTTTTTTC
CTTTCTTTACTTCTCCGGGTTTGGGTTTTGTTGGGGTTTTTTGGATGGATTTACCCTGTC
TTAGGAAGTTTGAGAAGAATCCTCTGTAGCCCGAGCTCCCCTCCCTTGCTGTAAACCACA
TGGCCTGTGCTGTCATGGGAGGTAGGATGGCGGCATCACCATTGCATTCCCATTGGACTC
ATGCACCTCCCTGATGGTTTTGTTTTGTTTTTTGTTTTTGCTTCTTTTCCAGAGTGTGGA
AAGTCTACAGTGCAGAAAGGCTTTAACCTGCCAGTTGATTTGAAATAACTTTCCCCTGCG
CAGGGCCGTATGCATCCTGCCAAGCTGCGTTATATTCTGTACTGTGTACAATAAAGAAGT
TTGCTTTCAGTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-274, - strand, RNAz p=0.971534
               

               
               480-599, + strand, RNAz p=0.587734

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-274, - strand, RNAz p=0.971534
               

               
               480-599, + strand, RNAz p=0.587734

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004454, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004454, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-612, gnl|bosTau2|chr1 (54527284-54526664)
               

               
               1-612, gnl|Hg17|chr3 (187247444-187246814)
               

               
               1-612, gnl|Mm7|chr16 (22031885-22031310)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr1 (54527284-54526664)
               

               
               1-612, gnl|Hg17|chr3 (187247444-187246814)
               

               
               1-612, gnl|Mm7|chr16 (22031885-22031310)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fhi (0.508733)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               spl (0.143184)
               

               
               cly (0.120642)
               

               
               med (0.116252)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.508733)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               spl (0.143184)
               

               
               cly (0.120642)
               

               
               med (0.116252)

	1-274, - strand, RNAz p=0.971534
	480-599, + strand, RNAz p=0.587734

	1-612, gnl\|bosTau2\|chr1 (54527284-54526664)
	1-612, gnl\|Hg17\|chr3 (187247444-187246814)
	1-612, gnl\|Mm7\|chr16 (22031885-22031310)

	fhi (0.508733)
	fbs (0.175346)
	cut (0.169924)
	spl (0.143184)
	cly (0.120642)
	med (0.116252)