Non-Coding RNA Search

Ss1.1-Mixc-0035h19.5

Sequence:


               
               TAAAGAGCACAGGAATGTTTCTGATTACACACCTCTAAGCCTGGCTGCTTCTGGTGGCTA
TGTGAATATTATCAAAATATTACTAAATGCAGGAGCTGAGATTAATTCTAGAACTGGTAG
CAAATTGGGCATTTCTCCGCTGATGTTAGCAGCTATGAATGGGCACACAGCTGCCGTTAA
ACTCTTGTTAGACATGGGCTCTGACATAAATGCTCAAATAGAAACCAATCGGAACACTGC
CCTTACCTTAGCCTGCTTCCAAGGAAGAACTGAAGTGGTTAGTCTTCTGCTTGATAGAAA
AGCAAATGTGGAACATAGAGCTAAGACTGGTCTCACACCACTAATGGAAGCTGCCTCTGG
TGGATATGCAGAGGTGGGCCGAGTTCTTTTGGACAAAGGTGCTGATGTTAATGCCCCTCC
AGTGCCCTCCTCGAGAGATACAGCTTTAACCATAGCAGCAGATAAAGGGCATTATAAATT
CTGTGAGCTTCTCATTGGCAGGGGCGCTCACATTGACGTACGTAACAAGAAGGGGAACAC
TCCATTGTGGCTGGCAGCAAATGGTGGACACCTTGATGTTGTTCAGTTACTGGTGCAAGC
AGGTGCAGATGTGGATGCAGCAGATAATCGCAAGATAACTCCTCTTATGGCAGCGTTTAG
AAAGGGTCATGTGAAGGTGGTGCGCTACTTAGTCAAAGAAGTCAATCAGTTTCCATCAGA
TTCTGAATGTATGAGATACATAGCAACCATCACTGATAAGGAGATGCTGAAGAAGTGTCA
TCTTTGTATGGAGTCAATAGTACAAGCCAAAGATAGACAGGCTGCTGAAGCAAACAAAAA
TGCCAGCATTTTATTAGAGGAGTTAGACTTGGAAAAGTTGAGGGAAGAAAGCCGGAGGCT
GGCTTTGGCTGCCAAAAGAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAGAGCACAGGAATGTTTCTGATTACACACCTCTAAGCCTGGCTGCTTCTGGTGGCTA
TGTGAATATTATCAAAATATTACTAAATGCAGGAGCTGAGATTAATTCTAGAACTGGTAG
CAAATTGGGCATTTCTCCGCTGATGTTAGCAGCTATGAATGGGCACACAGCTGCCGTTAA
ACTCTTGTTAGACATGGGCTCTGACATAAATGCTCAAATAGAAACCAATCGGAACACTGC
CCTTACCTTAGCCTGCTTCCAAGGAAGAACTGAAGTGGTTAGTCTTCTGCTTGATAGAAA
AGCAAATGTGGAACATAGAGCTAAGACTGGTCTCACACCACTAATGGAAGCTGCCTCTGG
TGGATATGCAGAGGTGGGCCGAGTTCTTTTGGACAAAGGTGCTGATGTTAATGCCCCTCC
AGTGCCCTCCTCGAGAGATACAGCTTTAACCATAGCAGCAGATAAAGGGCATTATAAATT
CTGTGAGCTTCTCATTGGCAGGGGCGCTCACATTGACGTACGTAACAAGAAGGGGAACAC
TCCATTGTGGCTGGCAGCAAATGGTGGACACCTTGATGTTGTTCAGTTACTGGTGCAAGC
AGGTGCAGATGTGGATGCAGCAGATAATCGCAAGATAACTCCTCTTATGGCAGCGTTTAG
AAAGGGTCATGTGAAGGTGGTGCGCTACTTAGTCAAAGAAGTCAATCAGTTTCCATCAGA
TTCTGAATGTATGAGATACATAGCAACCATCACTGATAAGGAGATGCTGAAGAAGTGTCA
TCTTTGTATGGAGTCAATAGTACAAGCCAAAGATAGACAGGCTGCTGAAGCAAACAAAAA
TGCCAGCATTTTATTAGAGGAGTTAGACTTGGAAAAGTTGAGGGAAGAAAGCCGGAGGCT
GGCTTTGGCTGCCAAAAGAGAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9H6J9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H6J9_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               110-229, - strand, RNAz p=0.799062

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               110-229, - strand, RNAz p=0.799062

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               110-325, gnl|bosTau2|chr18 (27107517-27107302)
               

               
               110-325, gnl|canFam2|chr13 (64865494-64865733)
               

               
               110-325, gnl|danRer3|chrNA (215261945-215261728)
               

               
               110-325, gnl|dasNov1|scaffold_52507 (848-610)
               

               
               110-325, gnl|echTel1|scaffold_296160 (24449-24210)
               

               
               110-325, gnl|fr1|chrUn (109678228-109678464)
               

               
               110-325, gnl|galGal2|chr4 (51283018-51283272)
               

               
               110-325, gnl|hg17|chr4 (74351612-74351851)
               

               
               110-325, gnl|Hg17|chr4 (74351848-74351633)
               

               
               110-325, gnl|loxAfr1|scaffold_3706 (2100-1861)
               

               
               110-325, gnl|mm7|chr5 (90235721-90235960)
               

               
               110-325, gnl|Mm7|chr5 (90235957-90235742)
               

               
               110-325, gnl|monDom2|scaffold_32 (18279859-18280100)
               

               
               110-325, gnl|oryCun1|scaffold_211608 (143210-142971)
               

               
               110-325, gnl|panTro1|chr3 (59371640-59371401)
               

               
               110-325, gnl|rheMac2|chr5 (56564193-56563954)
               

               
               110-325, gnl|rn3|chr14 (19350326-19350090)
               

               
               110-325, gnl|tetNig1|chr1 (2387423-2387656)
               

               
               110-325, gnl|xenTro1|scaffold_716 (543706-543930)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-325, gnl|bosTau2|chr18 (27107517-27107302)
               

               
               110-325, gnl|canFam2|chr13 (64865494-64865733)
               

               
               110-325, gnl|danRer3|chrNA (215261945-215261728)
               

               
               110-325, gnl|dasNov1|scaffold_52507 (848-610)
               

               
               110-325, gnl|echTel1|scaffold_296160 (24449-24210)
               

               
               110-325, gnl|fr1|chrUn (109678228-109678464)
               

               
               110-325, gnl|galGal2|chr4 (51283018-51283272)
               

               
               110-325, gnl|hg17|chr4 (74351612-74351851)
               

               
               110-325, gnl|Hg17|chr4 (74351848-74351633)
               

               
               110-325, gnl|loxAfr1|scaffold_3706 (2100-1861)
               

               
               110-325, gnl|mm7|chr5 (90235721-90235960)
               

               
               110-325, gnl|Mm7|chr5 (90235957-90235742)
               

               
               110-325, gnl|monDom2|scaffold_32 (18279859-18280100)
               

               
               110-325, gnl|oryCun1|scaffold_211608 (143210-142971)
               

               
               110-325, gnl|panTro1|chr3 (59371640-59371401)
               

               
               110-325, gnl|rheMac2|chr5 (56564193-56563954)
               

               
               110-325, gnl|rn3|chr14 (19350326-19350090)
               

               
               110-325, gnl|tetNig1|chr1 (2387423-2387656)
               

               
               110-325, gnl|xenTro1|scaffold_716 (543706-543930)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cut (0.169924)
               

               
               eep (0.122564)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               eep (0.122564)
               

               
               ldo (0.0970026)

	110-325, gnl\|bosTau2\|chr18 (27107517-27107302)
	110-325, gnl\|canFam2\|chr13 (64865494-64865733)
	110-325, gnl\|danRer3\|chrNA (215261945-215261728)
	110-325, gnl\|dasNov1\|scaffold_52507 (848-610)
	110-325, gnl\|echTel1\|scaffold_296160 (24449-24210)
	110-325, gnl\|fr1\|chrUn (109678228-109678464)
	110-325, gnl\|galGal2\|chr4 (51283018-51283272)
	110-325, gnl\|hg17\|chr4 (74351612-74351851)
	110-325, gnl\|Hg17\|chr4 (74351848-74351633)
	110-325, gnl\|loxAfr1\|scaffold_3706 (2100-1861)
	110-325, gnl\|mm7\|chr5 (90235721-90235960)
	110-325, gnl\|Mm7\|chr5 (90235957-90235742)
	110-325, gnl\|monDom2\|scaffold_32 (18279859-18280100)
	110-325, gnl\|oryCun1\|scaffold_211608 (143210-142971)
	110-325, gnl\|panTro1\|chr3 (59371640-59371401)
	110-325, gnl\|rheMac2\|chr5 (56564193-56563954)
	110-325, gnl\|rn3\|chr14 (19350326-19350090)
	110-325, gnl\|tetNig1\|chr1 (2387423-2387656)
	110-325, gnl\|xenTro1\|scaffold_716 (543706-543930)