Non-Coding RNA Search

Ss1.1-Mixc-0035h22.3

Sequence:


               
               GAGAAGAGAAGGGCAGCATGGCCCGGGGAGAAAAGGGAAGAGGGGAGGGACCTGCCAAGA
GTGCCCTCCGGAAGGTACGCACAGCCACCCTGGTTATCAACTTGGCCCGGGGCTGGCAGC
AGTGGGCAAATGAGAATAGCACCAGGCAGGCCCAGGAGCCTACAGGCTGGATGCCAGGAG
GGGCCAGGGAGTCAGACCAACCTTCTGGACCAGTGATACACCCTACAACCCACCAGAAAG
TCCAGAGTGCCCCAAAATCTCCCTCCCCAAAGCCAGGGGGATATGGAGCTGGACAAAGCT
CAGAGGGAGCCACCGAAGTCTCTCCTATCAAAAGGAAAGAGGTGACCAAGACCATTGTCA
GCAAAGCTTACGAGAGAGGAGGTGATGTAAGCCACCTCAGCCATAGATACGAGAAGGATG
GTGATGAGCCTGAACCCGAGCAGCCAGAGAGTGACATTGACAGACTCCTCCGCAGCCATG
GCTCCCCAACGCGGAGAAGAAAATGTGCCAACCTGGTATCTGAGCTGACCAAGGGCTGGA
AGGAGATGGAACAGGAGGAACAGGAGGAGCTCAAATGCAGGAGTGATAGCATAGACACAG
AAGACAGCGGCTACGGAGGGGAGACAGAGGAGAGGCCGGAGCAGGATGGAGAGCAGGTGG
CCATCGCCAGAATCAAACGCCCCTTGCCCTCCCAGGCAAATAGATTTACCGAGAAACTCA
ATTGCAAAGCCCAGCGGAAATACAGCCAAGTGGGCCACCTGAAAGGGAGGTGGCAGCAGT
GGGCTGATGAACACATACAATCCCAGAAGCTCAACCCTTTCAGTGACGAGTTTGATTATG
AATTGGCCATGTCCACCCGCCTGCACAAAGGAGATGAAGGCTACGGCCGTCCCAAGGAAG
GAACCAGAACTGCGGAAAGGGCTAAGAGAGCTGAGGAGCACATCTACAGAGAAATCATGG
ACATGTGCTTCATCATCCGCACGATGGCGCACCCCAGGCGGGACGGCAAGATCCAGGTTA
CTTTCGGAGATCTCTTTGACAGATACGTTCGTATTTCAGATAAAGTAGTGGGCATTCTCA
TGCGCGCCAGGAAACACGGACTGGTTGACTTTGAGGGAGAGATGCTATGGCAAGGCCGAG
ATGACCACGTTGTGATCACTCTGCTAAAGTGAACTTGCAACAACACAAACCAGACTTGAC
TCACTCCTGTCTTAATGCTAAACGCGAAAGCAGTGAAATTTAAAAGGCAAACTGCTCTGT
ACCGAGTTAGTAAACATTAAACAATTTTTACAAAAATGATTTTTTGGCACTCTGTTTCTG
AAGAAATCTAAAGATTTTGAGAAAGCACATGCAAAACAATTCAGAAGGCACATCGAGGGT
TATTCATATATAATACTATAAGTATTTGAAATTTCACTTACCTTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAGAGAAGGGCAGCATGGCCCGGGGAGAAAAGGGAAGAGGGGAGGGACCTGCCAAGA
GTGCCCTCCGGAAGGTACGCACAGCCACCCTGGTTATCAACTTGGCCCGGGGCTGGCAGC
AGTGGGCAAATGAGAATAGCACCAGGCAGGCCCAGGAGCCTACAGGCTGGATGCCAGGAG
GGGCCAGGGAGTCAGACCAACCTTCTGGACCAGTGATACACCCTACAACCCACCAGAAAG
TCCAGAGTGCCCCAAAATCTCCCTCCCCAAAGCCAGGGGGATATGGAGCTGGACAAAGCT
CAGAGGGAGCCACCGAAGTCTCTCCTATCAAAAGGAAAGAGGTGACCAAGACCATTGTCA
GCAAAGCTTACGAGAGAGGAGGTGATGTAAGCCACCTCAGCCATAGATACGAGAAGGATG
GTGATGAGCCTGAACCCGAGCAGCCAGAGAGTGACATTGACAGACTCCTCCGCAGCCATG
GCTCCCCAACGCGGAGAAGAAAATGTGCCAACCTGGTATCTGAGCTGACCAAGGGCTGGA
AGGAGATGGAACAGGAGGAACAGGAGGAGCTCAAATGCAGGAGTGATAGCATAGACACAG
AAGACAGCGGCTACGGAGGGGAGACAGAGGAGAGGCCGGAGCAGGATGGAGAGCAGGTGG
CCATCGCCAGAATCAAACGCCCCTTGCCCTCCCAGGCAAATAGATTTACCGAGAAACTCA
ATTGCAAAGCCCAGCGGAAATACAGCCAAGTGGGCCACCTGAAAGGGAGGTGGCAGCAGT
GGGCTGATGAACACATACAATCCCAGAAGCTCAACCCTTTCAGTGACGAGTTTGATTATG
AATTGGCCATGTCCACCCGCCTGCACAAAGGAGATGAAGGCTACGGCCGTCCCAAGGAAG
GAACCAGAACTGCGGAAAGGGCTAAGAGAGCTGAGGAGCACATCTACAGAGAAATCATGG
ACATGTGCTTCATCATCCGCACGATGGCGCACCCCAGGCGGGACGGCAAGATCCAGGTTA
CTTTCGGAGATCTCTTTGACAGATACGTTCGTATTTCAGATAAAGTAGTGGGCATTCTCA
TGCGCGCCAGGAAACACGGACTGGTTGACTTTGAGGGAGAGATGCTATGGCAAGGCCGAG
ATGACCACGTTGTGATCACTCTGCTAAAGTGAACTTGCAACAACACAAACCAGACTTGAC
TCACTCCTGTCTTAATGCTAAACGCGAAAGCAGTGAAATTTAAAAGGCAAACTGCTCTGT
ACCGAGTTAGTAAACATTAAACAATTTTTACAAAAATGATTTTTTGGCACTCTGTTTCTG
AAGAAATCTAAAGATTTTGAGAAAGCACATGCAAAACAATTCAGAAGGCACATCGAGGGT
TATTCATATATAATACTATAAGTATTTGAAATTTCACTTACCTTTTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55631168|ref|XP_528210.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55631168|ref|XP_528210.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               895-1014, + strand, RNAz p=0.82693

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               895-1014, + strand, RNAz p=0.82693

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_139166, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_139166, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               695-1426, gnl|bosTau2|chr14 (35122493-35121770)
               

               
               695-1426, gnl|Hg17|chr8 (107842918-107842040)
               

               
               695-1426, gnl|Mm7|chr15 (41865274-41864568)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               695-1426, gnl|bosTau2|chr14 (35122493-35121770)
               

               
               695-1426, gnl|Hg17|chr8 (107842918-107842040)
               

               
               695-1426, gnl|Mm7|chr15 (41865274-41864568)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               ste (0.946458)
               

               
               ssp (0.813118)
               

               
               ldo (0.776021)
               

               
               tbr (0.616713)
               

               
               hea (0.613497)
               

               
               sme (0.305437)
               

               
               mas (0.210305)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               bfe (0.149858)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               tra (0.123092)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.946458)
               

               
               ssp (0.813118)
               

               
               ldo (0.776021)
               

               
               tbr (0.616713)
               

               
               hea (0.613497)
               

               
               sme (0.305437)
               

               
               mas (0.210305)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               bfe (0.149858)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               tra (0.123092)

	695-1426, gnl\|bosTau2\|chr14 (35122493-35121770)
	695-1426, gnl\|Hg17\|chr8 (107842918-107842040)
	695-1426, gnl\|Mm7\|chr15 (41865274-41864568)

	ste (0.946458)
	ssp (0.813118)
	ldo (0.776021)
	tbr (0.616713)
	hea (0.613497)
	sme (0.305437)
	mas (0.210305)
	gul (0.177588)
	ton (0.1755)
	bfe (0.149858)
	hlv (0.139256)
	nca (0.136874)
	tra (0.123092)