Ss1.1-Mixc-0035j01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGACCCGGCGGGCAGCTCCGCATGGACCGAGAAATGAACGCTTGGAAATCTGTCTGCGA GCGGACCCATGATCCAAGGACCAAAAGAGCCGCGTGATCGCCGGACCTGGCCCTGCGACC CGAGACATGGGCCAGACCTCGGTCTCCACGCTGTCCCCGCAGCCCAGCAGCGTTGATGGA CTGGACAAAGCTTCTATAGCAAACTCAGATGGCCCAACAGCAGGTTCCCAAACACCTCCC TTCAAGAGAAAGGGGAAGCTCTCCACCATCGGTAAAATCTTTAAGCCTTGGAAATGGAGG AAAAAGAAGACCAGTGACAAATTTAGAGAAACATCAGCAGTATTAGAAAGGAAGATTTCC ACAAGACAAAGTAGAGAGGAGCTGATAAGAAGGGGAGTTCTTAAGGAATTGCCTGATCAA GATGGAGATGTAACAGTTAACTTTGAAAATTCAAACGGGCACATGATACCCATCGGAGAG GAGTCTACCCGAGAGGAAAATATAAAACTGAAGAAGGAAGGGAATGGCTCTGTAGCTGAA AAACACCACCTCTGGAGGAAAAGGCGAAGATAAGAAAGCTGGTTCCTCTCATTCAAGAAA ACAACTGGCTCTAAAGCATCAGCTCACCGTCTACTTCCTCCACCTCATCTCGTTCCAAAG CTTCAAAGGAGACCGTTTCTAGCAAAACGGGGACAGTGGGAATCACAAAGGGCAAGAAAA AAACTGGCAAGCAGCTGACGTCTCAGCCATCCTCAGATGCAACCACTTCTGGCACATCTG ACCTTAAAGGAGAGCCTTCCGAGCCCCGGGTGGAGAGTCTCAAACCTGAGCAGACTGTCC CTGAGACGGAGGAGCAGACCACAGGCAAAGCCAAGTCTGCAGTCCCTCTGGCCCCTGTGG CTCCCCCACCCCCTCGCCTGCCCCCTCCGCTCCCGCTGGAGGACCAGAGCATCGTTGCCT CAGACACTCCTGTCGTCCTGATCAGCAATGGAGCTGACCTGCCCGTCCCTGCCTTCGACC CAAGTCAGCTTCTCTGGACTGAAGAGCCGACAGGCAGAACTACTGTCCATTCAGGCACTG GCTTAAGTGTTAGCAGAGAAAATGGAAAATGTTTCTCTACCAAAGATGAGCTGGGGAAGG CAGCGCCTCAGCTCCTGACTCCTGGGCTGATGGGAGAATCTTCAGAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGACCCGGCGGGCAGCTCCGCATGGACCGAGAAATGAACGCTTGGAAATCTGTCTGCGA GCGGACCCATGATCCAAGGACCAAAAGAGCCGCGTGATCGCCGGACCTGGCCCTGCGACC CGAGACATGGGCCAGACCTCGGTCTCCACGCTGTCCCCGCAGCCCAGCAGCGTTGATGGA CTGGACAAAGCTTCTATAGCAAACTCAGATGGCCCAACAGCAGGTTCCCAAACACCTCCC TTCAAGAGAAAGGGGAAGCTCTCCACCATCGGTAAAATCTTTAAGCCTTGGAAATGGAGG AAAAAGAAGACCAGTGACAAATTTAGAGAAACATCAGCAGTATTAGAAAGGAAGATTTCC ACAAGACAAAGTAGAGAGGAGCTGATAAGAAGGGGAGTTCTTAAGGAATTGCCTGATCAA GATGGAGATGTAACAGTTAACTTTGAAAATTCAAACGGGCACATGATACCCATCGGAGAG GAGTCTACCCGAGAGGAAAATATAAAACTGAAGAAGGAAGGGAATGGCTCTGTAGCTGAA AAACACCACCTCTGGAGGAAAAGGCGAAGATAAGAAAGCTGGTTCCTCTCATTCAAGAAA ACAACTGGCTCTAAAGCATCAGCTCACCGTCTACTTCCTCCACCTCATCTCGTTCCAAAG CTTCAAAGGAGACCGTTTCTAGCAAAACGGGGACAGTGGGAATCACAAAGGGCAAGAAAA AAACTGGCAAGCAGCTGACGTCTCAGCCATCCTCAGATGCAACCACTTCTGGCACATCTG ACCTTAAAGGAGAGCCTTCCGAGCCCCGGGTGGAGAGTCTCAAACCTGAGCAGACTGTCC CTGAGACGGAGGAGCAGACCACAGGCAAAGCCAAGTCTGCAGTCCCTCTGGCCCCTGTGG CTCCCCCACCCCCTCGCCTGCCCCCTCCGCTCCCGCTGGAGGACCAGAGCATCGTTGCCT CAGACACTCCTGTCGTCCTGATCAGCAATGGAGCTGACCTGCCCGTCCCTGCCTTCGACC CAAGTCAGCTTCTCTGGACTGAAGAGCCGACAGGCAGAACTACTGTCCATTCAGGCACTG GCTTAAGTGTTAGCAGAGAAAATGGAAAATGTTTCTCTACCAAAGATGAGCTGGGGAAGG CAGCGCCTCAGCTCCTGACTCCTGGGCTGATGGGAGAATCTTCAGAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 172-364, gnl|bosTau2|chr26 (25334748-25334933) | |
| 172-364, gnl|Hg17|chr10 (121566147-121565959) | |
| 172-364, gnl|Mm7|chr10 (12992320-12992152) | |
| 577-1111, gnl|bosTau2|chr9 (47907163-47906633) | |
| 577-1111, gnl|canFam2|chr1 (38341762-38342164) | |
| 577-1111, gnl|canFam2|chr28 (32934487-32934891) | |
| 577-1111, gnl|dasNov1|scaffold_1871 (52225-51811) | |
| 577-1111, gnl|dasNov1|scaffold_21286 (13846-14230) | |
| 577-1111, gnl|galGal2|chrUn (102625014-102624595) | |
| 577-1111, gnl|hg17|chr10 (121565059-121565477) | |
| 577-1111, gnl|hg17|chr6 (144128032-144128446) | |
| 577-1111, gnl|Hg17|chr6 (144128089-144128628) | |
| 577-1111, gnl|loxAfr1|scaffold_15507 (28458-28015) | |
| 577-1111, gnl|loxAfr1|scaffold_15507 (27875-28285) | |
| 577-1111, gnl|mm7|chr10 (12954295-12953883) | |
| 577-1111, gnl|Mm7|chr10 (12954238-12953699) | |
| 577-1111, gnl|mm7|chr7 (124782462-124782813) | |
| 577-1111, gnl|monDom2|scaffold_0 (63759267-63759711) | |
| 577-1111, gnl|monDom2|scaffold_0 (63759851-63759438) | |
| 577-1111, gnl|oryCun1|scaffold_187726 (45169-44795) | |
| 577-1111, gnl|oryCun1|scaffold_204255 (266127-266539) | |
| 577-1111, gnl|panTro1|chr5 (147045336-147045750) | |
| 577-1111, gnl|panTro1|chr8 (123825789-123826207) | |
| 577-1111, gnl|rheMac2|chr4 (119916426-119916012) | |
| 577-1111, gnl|rheMac2|chr9 (119441988-119442405) | |
| 577-1111, gnl|rn3|chr1 (188088620-188088969) | |
| 577-1111, gnl|rn3|chr1 (8026652-8026216) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 172-364, gnl|bosTau2|chr26 (25334748-25334933) | |
| 172-364, gnl|Hg17|chr10 (121566147-121565959) | |
| 172-364, gnl|Mm7|chr10 (12992320-12992152) | |
| 577-1111, gnl|bosTau2|chr9 (47907163-47906633) | |
| 577-1111, gnl|canFam2|chr1 (38341762-38342164) | |
| 577-1111, gnl|canFam2|chr28 (32934487-32934891) | |
| 577-1111, gnl|dasNov1|scaffold_1871 (52225-51811) | |
| 577-1111, gnl|dasNov1|scaffold_21286 (13846-14230) | |
| 577-1111, gnl|galGal2|chrUn (102625014-102624595) | |
| 577-1111, gnl|hg17|chr10 (121565059-121565477) | |
| 577-1111, gnl|hg17|chr6 (144128032-144128446) | |
| 577-1111, gnl|Hg17|chr6 (144128089-144128628) | |
| 577-1111, gnl|loxAfr1|scaffold_15507 (28458-28015) | |
| 577-1111, gnl|loxAfr1|scaffold_15507 (27875-28285) | |
| 577-1111, gnl|mm7|chr10 (12954295-12953883) | |
| 577-1111, gnl|Mm7|chr10 (12954238-12953699) | |
| 577-1111, gnl|mm7|chr7 (124782462-124782813) | |
| 577-1111, gnl|monDom2|scaffold_0 (63759267-63759711) | |
| 577-1111, gnl|monDom2|scaffold_0 (63759851-63759438) | |
| 577-1111, gnl|oryCun1|scaffold_187726 (45169-44795) | |
| 577-1111, gnl|oryCun1|scaffold_204255 (266127-266539) | |
| 577-1111, gnl|panTro1|chr5 (147045336-147045750) | |
| 577-1111, gnl|panTro1|chr8 (123825789-123826207) | |
| 577-1111, gnl|rheMac2|chr4 (119916426-119916012) | |
| 577-1111, gnl|rheMac2|chr9 (119441988-119442405) | |
| 577-1111, gnl|rn3|chr1 (188088620-188088969) | |
| 577-1111, gnl|rn3|chr1 (8026652-8026216) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| cty (0.10408) |