Non-Coding RNA Search

Ss1.1-Mixc-0035j09.5

Sequence:


               
               CACACCCCAAGCCGAGTTTAGCACAATTCTTTTAAACGAGCAGAATGCCAGTAAGAAGCT
GACCGCCACACAAAGCTTCTGGGATGTAGAATCCTTGCTCTTTAATCACAAGTCCTTTAT
ACAAGCAGCTTTACCTAAAGAACTTTCTCTCCAGCCATACTGACTTCACGGGGGAAGGGT
TAAAGTGTTTGGTGAGCGATCTGTTCTCACTTGACCTGGCTAGGAGCCATTTTTTGCACA
TGAGGGAATTTGGCCTTTCCTCAGTTATCTGAATGTTTTACCCAAGCGCCTTCCTGCTAT
TGTAGCAAAGTTGCTCAGCTTCATTGTGCATGGGGTGAAAACGGACTAACGCATTTTCCA
TCACTATTCTAACCGTGTTAGTGCAAAGGGCCTCCTAGTAGTTCAAATTCCTGTACGTAT
ATATGTACGTGTGTGTGTGCGTGTGTGTATAATACACTCACGAGCTCTTGTTCTAAGACA
TCCAGCTGGATATTATAGGAAGCACTTTTATAAACAACTATACCACATAGCACAGGAGAG
AGAAAAGCATTAGTTTGGAGGCCAAAGAACGTGTGTGAAGACTTGGACAGCAATCGAGAA
AGTTTTGTCAGTTACCCATGCCAGGAGGAGGTTTTGCCAAGAGTAAACTGCTCATGAAAT
ATTTTCAGGATGAGAAGAGGCAATAGGTCCTCAGAGAGAAAGACAATAAGGATGTGTGAA
CTATTGATGGGTGTGTTGCACGTGGGTTAGAAGGATCTGTTAGGTGGAGGTTTGCACTTG
CTAGGGCCAAGGTCATGTAAATATGTAGCACTTCTGACAGACACCTAGCCTGTTGCTGAA
TGTAGTATATTTCCAAAGTTTGCAAGTCTTCCTGTATTGTACAAAAATACTGCTGCTTGA
TAATATATAATAGCGACCCAAATTCATTCATATGTTATTAAATTTTATTTTCTTATCTGT
ATTTTTATGCTTTTTCATCTGTCTCAAAATACCGTATCCTTGTTGGAATTAGAAGATATT
TATAAGTGGTCAGAAATCTTTGTCAAGTGCCTCTTTTTACATATTGGTGGATGATTTTTT
TTTCCCTTAAGAGAAAAGGATGTATTCTTAGAAATTTGTTTATCATTCCAGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACACCCCAAGCCGAGTTTAGCACAATTCTTTTAAACGAGCAGAATGCCAGTAAGAAGCT
GACCGCCACACAAAGCTTCTGGGATGTAGAATCCTTGCTCTTTAATCACAAGTCCTTTAT
ACAAGCAGCTTTACCTAAAGAACTTTCTCTCCAGCCATACTGACTTCACGGGGGAAGGGT
TAAAGTGTTTGGTGAGCGATCTGTTCTCACTTGACCTGGCTAGGAGCCATTTTTTGCACA
TGAGGGAATTTGGCCTTTCCTCAGTTATCTGAATGTTTTACCCAAGCGCCTTCCTGCTAT
TGTAGCAAAGTTGCTCAGCTTCATTGTGCATGGGGTGAAAACGGACTAACGCATTTTCCA
TCACTATTCTAACCGTGTTAGTGCAAAGGGCCTCCTAGTAGTTCAAATTCCTGTACGTAT
ATATGTACGTGTGTGTGTGCGTGTGTGTATAATACACTCACGAGCTCTTGTTCTAAGACA
TCCAGCTGGATATTATAGGAAGCACTTTTATAAACAACTATACCACATAGCACAGGAGAG
AGAAAAGCATTAGTTTGGAGGCCAAAGAACGTGTGTGAAGACTTGGACAGCAATCGAGAA
AGTTTTGTCAGTTACCCATGCCAGGAGGAGGTTTTGCCAAGAGTAAACTGCTCATGAAAT
ATTTTCAGGATGAGAAGAGGCAATAGGTCCTCAGAGAGAAAGACAATAAGGATGTGTGAA
CTATTGATGGGTGTGTTGCACGTGGGTTAGAAGGATCTGTTAGGTGGAGGTTTGCACTTG
CTAGGGCCAAGGTCATGTAAATATGTAGCACTTCTGACAGACACCTAGCCTGTTGCTGAA
TGTAGTATATTTCCAAAGTTTGCAAGTCTTCCTGTATTGTACAAAAATACTGCTGCTTGA
TAATATATAATAGCGACCCAAATTCATTCATATGTTATTAAATTTTATTTTCTTATCTGT
ATTTTTATGCTTTTTCATCTGTCTCAAAATACCGTATCCTTGTTGGAATTAGAAGATATT
TATAAGTGGTCAGAAATCTTTGTCAAGTGCCTCTTTTTACATATTGGTGGATGATTTTTT
TTTCCCTTAAGAGAAAAGGATGTATTCTTAGAAATTTGTTTATCATTCCAGAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               394-533, + strand, RNAz p=0.973323

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               394-533, + strand, RNAz p=0.973323

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1140, gnl|bosTau2|chr13 (58707588-58708730)
               

               
               3-1140, gnl|Hg17|chr20 (49439562-49438396)
               

               
               3-1140, gnl|Mm7|chr2 (168271529-168270365)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1140, gnl|bosTau2|chr13 (58707588-58708730)
               

               
               3-1140, gnl|Hg17|chr20 (49439562-49438396)
               

               
               3-1140, gnl|Mm7|chr2 (168271529-168270365)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tbr (0.154178)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               cty (0.10408)

	3-1140, gnl\|bosTau2\|chr13 (58707588-58708730)
	3-1140, gnl\|Hg17\|chr20 (49439562-49438396)
	3-1140, gnl\|Mm7\|chr2 (168271529-168270365)