Non-Coding RNA Search

Ss1.1-Mixc-0035j20.5

Sequence:


               
               ACACCGTTTGCAGTACCAAAAATCCAGGCTTGGTACATACTCGAGGGTGACCTCTTTGTC
ATGGATCATTAGAGTTCCCTGTGAAAACAAAGACAGAGCCATCAACATTAACCCTTGGAG
AAACAGAGACAGGAAGGAACAGAGAGCCTTTCTAGTCCCCAAGCTGAAACACTGTATAAA
GAGTGAGCTTATTCACTGACAAAAGGAAATGGCTGTTAAAAGCCACAGACTTGGGGCAGA
GTGGCAGAGCAAGCTTAAGCTTAGAGAAAGGGAGTGGGAAAAGGTAAAATCAGTCTTCGG
CCTTGGCTCCTACGGGTTGTGGCGCTGTCCTTGAGCAGGTTAGGCTGAGTCTACTCCTCC
AGAGGTCATGTAGTCCCAGAAAGTCCCTCACCATGCTAGGGAGTAGCACTCTATCAAGAA
GCAAACTCTTTCTTCTGAAGCACAGAGCCACAGGAGTCTTCTCAATTATCTCCTTTTCCA
CAGCTAACTCAAATCTCCTTGGCAAGGTAGTAAGGGCTTTTAACTTTGATGCCTGGAAAC
TCTTTTTGCAACACTGCTGCATGGCAAAAGCACCAAAAGAAAGAGGTATAACCCAAAGAC
AGGAAGAAAAGGGGAATGTGAAAGCTTCACAGCAGGTCACATCCTTATAGCAGGAGACTA
AATGGCTAGTGGTGGTGGCAGTGGCAGCAGCATCACTGTGGCATGGAGCCTACAGAGTAA
GCTGGCCATGAGATCTGATGAGCAACTATTGGCAAATAAGCACTTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACCGTTTGCAGTACCAAAAATCCAGGCTTGGTACATACTCGAGGGTGACCTCTTTGTC
ATGGATCATTAGAGTTCCCTGTGAAAACAAAGACAGAGCCATCAACATTAACCCTTGGAG
AAACAGAGACAGGAAGGAACAGAGAGCCTTTCTAGTCCCCAAGCTGAAACACTGTATAAA
GAGTGAGCTTATTCACTGACAAAAGGAAATGGCTGTTAAAAGCCACAGACTTGGGGCAGA
GTGGCAGAGCAAGCTTAAGCTTAGAGAAAGGGAGTGGGAAAAGGTAAAATCAGTCTTCGG
CCTTGGCTCCTACGGGTTGTGGCGCTGTCCTTGAGCAGGTTAGGCTGAGTCTACTCCTCC
AGAGGTCATGTAGTCCCAGAAAGTCCCTCACCATGCTAGGGAGTAGCACTCTATCAAGAA
GCAAACTCTTTCTTCTGAAGCACAGAGCCACAGGAGTCTTCTCAATTATCTCCTTTTCCA
CAGCTAACTCAAATCTCCTTGGCAAGGTAGTAAGGGCTTTTAACTTTGATGCCTGGAAAC
TCTTTTTGCAACACTGCTGCATGGCAAAAGCACCAAAAGAAAGAGGTATAACCCAAAGAC
AGGAAGAAAAGGGGAATGTGAAAGCTTCACAGCAGGTCACATCCTTATAGCAGGAGACTA
AATGGCTAGTGGTGGTGGCAGTGGCAGCAGCATCACTGTGGCATGGAGCCTACAGAGTAA
GCTGGCCATGAGATCTGATGAGCAACTATTGGCAAATAAGCACTTTGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               119-228, - strand, RNAz p=0.956816
               

               
               304-407, + strand, RNAz p=0.955474

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-228, - strand, RNAz p=0.956816
               

               
               304-407, + strand, RNAz p=0.955474

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-768, gnl|bosTau2|chr22 (38334343-38333553)
               

               
               4-768, gnl|Hg17|chr3 (50060756-50059980)
               

               
               4-768, gnl|Mm7|chr9 (107532357-107533160)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-768, gnl|bosTau2|chr22 (38334343-38333553)
               

               
               4-768, gnl|Hg17|chr3 (50060756-50059980)
               

               
               4-768, gnl|Mm7|chr9 (107532357-107533160)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	119-228, - strand, RNAz p=0.956816
	304-407, + strand, RNAz p=0.955474

	4-768, gnl\|bosTau2\|chr22 (38334343-38333553)
	4-768, gnl\|Hg17\|chr3 (50060756-50059980)
	4-768, gnl\|Mm7\|chr9 (107532357-107533160)