Non-Coding RNA Search

Ss1.1-Mixc-0035k15.5

Sequence:


               
               CTGGAACAGAGACTCTCCCCCATCCATGTCACAGGCCCTCAGTGTGTATTCAGACCAAGT
TGTGCCCCGCCTAAGGGCAGAACCTCATTTTTCTCCCAGTCCAGCCATCAGAACCCAGTC
CAGAGTCACTCAGATTATCACTGTCGATGAAAGTGCCTACAATTGATAGGGTGAGCAAAC
AGACAGAATCAGTGCTGTGGATGAGGTGACCTAGGATAGAAGATTTCTGATTTCACTCTT
GTTTCCCCCGTCTGAGGGATTCCTAGATTTCCTGGCATTTTGCAGACGTGGTCCGTCTTT
GCTGCAGGAGTGAGTAGCATCCATTGAGCAGATCCCCAGAAGTAGGGAGATCTCTAAGTA
TTAACTCCCAATGAAAGGATGATGAGACATGTGGAGATCCTAAGCAGCCCTGTTTTGCCC
CCTCTCCACTCTTCAAATCACACTGCATTTGTCCCACAGATTTCCCTGAGCAGAGATTCT
TCCCAATTTCAGATAAAATAGCATGAACGTGGTAGGAGAAGGGCAGATGCCCAGGTCACT
ACTCGTAATGGTAGAAATACTGTCAGGACAAAGCATTGATCAGAGCAAAAAGGAACCCAC
CCATGTGCTCCTTTGCAGATCTCTGTCCTGGTGTTCTAGGCTAGTACCTTATTTGGTCAC
CCACATTATCTCACTGCACATCCACGGATTTGCAGCACTGCTCTTCCTAGTAGCCCTTCA
TTATTCCAGGCCAGACCACTAGGAACGGCATTAGATTCCATCTTTGCTGCTCACTCTTGG
TTTCTAGTCTCCGAAAAAAATACAGTGGAGGATACAGTGTTGATGTTTACATCTGCAAAA
GTCCTCTTGCCATGAACACTGAAATAATGTGTTAGTTCTTAACCAGAAGAGCTGAGAAAC
TTGTAATAATTTAGGCAAAAGTTGTATACATGACCACAAAGTTTAGCATCACCACCACAC
CAGAAGGAATAGGAAAGGCTTTACAGAGAGAGCTGGCTCTCCATGTGTAGATACCTTTGT
CAGGAAACCAGCCATTGCTTTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAACAGAGACTCTCCCCCATCCATGTCACAGGCCCTCAGTGTGTATTCAGACCAAGT
TGTGCCCCGCCTAAGGGCAGAACCTCATTTTTCTCCCAGTCCAGCCATCAGAACCCAGTC
CAGAGTCACTCAGATTATCACTGTCGATGAAAGTGCCTACAATTGATAGGGTGAGCAAAC
AGACAGAATCAGTGCTGTGGATGAGGTGACCTAGGATAGAAGATTTCTGATTTCACTCTT
GTTTCCCCCGTCTGAGGGATTCCTAGATTTCCTGGCATTTTGCAGACGTGGTCCGTCTTT
GCTGCAGGAGTGAGTAGCATCCATTGAGCAGATCCCCAGAAGTAGGGAGATCTCTAAGTA
TTAACTCCCAATGAAAGGATGATGAGACATGTGGAGATCCTAAGCAGCCCTGTTTTGCCC
CCTCTCCACTCTTCAAATCACACTGCATTTGTCCCACAGATTTCCCTGAGCAGAGATTCT
TCCCAATTTCAGATAAAATAGCATGAACGTGGTAGGAGAAGGGCAGATGCCCAGGTCACT
ACTCGTAATGGTAGAAATACTGTCAGGACAAAGCATTGATCAGAGCAAAAAGGAACCCAC
CCATGTGCTCCTTTGCAGATCTCTGTCCTGGTGTTCTAGGCTAGTACCTTATTTGGTCAC
CCACATTATCTCACTGCACATCCACGGATTTGCAGCACTGCTCTTCCTAGTAGCCCTTCA
TTATTCCAGGCCAGACCACTAGGAACGGCATTAGATTCCATCTTTGCTGCTCACTCTTGG
TTTCTAGTCTCCGAAAAAAATACAGTGGAGGATACAGTGTTGATGTTTACATCTGCAAAA
GTCCTCTTGCCATGAACACTGAAATAATGTGTTAGTTCTTAACCAGAAGAGCTGAGAAAC
TTGTAATAATTTAGGCAAAAGTTGTATACATGACCACAAAGTTTAGCATCACCACCACAC
CAGAAGGAATAGGAAAGGCTTTACAGAGAGAGCTGGCTCTCCATGTGTAGATACCTTTGT
CAGGAAACCAGCCATTGCTTTCAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               267-382, - strand, RNAz p=0.773957
               

               
               603-712, + strand, RNAz p=0.945638

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-382, - strand, RNAz p=0.773957
               

               
               603-712, + strand, RNAz p=0.945638

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1044, gnl|bosTau2|chr1 (35615149-35614081)
               

               
               3-1044, gnl|Hg17|chr3 (117010938-117009919)
               

               
               3-1044, gnl|Mm7|chr16 (41935685-41936674)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1044, gnl|bosTau2|chr1 (35615149-35614081)
               

               
               3-1044, gnl|Hg17|chr3 (117010938-117009919)
               

               
               3-1044, gnl|Mm7|chr16 (41935685-41936674)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	267-382, - strand, RNAz p=0.773957
	603-712, + strand, RNAz p=0.945638

	3-1044, gnl\|bosTau2\|chr1 (35615149-35614081)
	3-1044, gnl\|Hg17\|chr3 (117010938-117009919)
	3-1044, gnl\|Mm7\|chr16 (41935685-41936674)