Non-Coding RNA Search

Ss1.1-Mixc-0035m06.5

Sequence:


               
               CAGCAGCACCAGAGCCAAGATGGCGGCCAGCAGGAGGCTGATGAAGGAGCTTGAAGAAAT
CCGCAAATGTGGGATGAAAAACTTCCGTAACATCCAGGTTGATGAAGCTAATTTATTGAC
TTGGCAAGGGCTTATTGTTCCTGACAACCCTCCATATGATAAGGGGGCCTTCAGAATTGA
AATCAACTTTCCAGCAGAGTACCCATTCAAACCACCGAAGATCACGTTTAAAACGAAGAT
CTATCACCCCAACATCGATGAAAAGGGGCAGGTCTGCCTGCCGGTAATTAGTGCTGAAAA
CTGGAAGCCAGCAACCAAAACCGACCAAGTCATCCAGTCCCTTATAGCGCTGGTGAACGA
CCCCCAGCCCGAGCACCCGCTCCGGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTAA
AAAATTCTGTAAGAATGCTGAAGAGTTTACAAAGAAATATGGGGAAAAGCGACCTGTGGA
CTAAAATCTGCCGTGATTGATTCCAGCGAGTGTGAGCAGAGACCCCGAGCAGTGCATTCA
GACACCCCGCAAAGCAGGACTCTGTGGAAAATTGACATGTGCCACCGCCTGGCGTCTGCT
TGTGGCAGTTACTAACTTTCTACAGTTTTCTTAATCAGAAGTGGTCTAGGTAACCTGTAA
AGAAAGGATTAAAAATTTAAGATGTTCTAAAAAAAATTTCTTTGTTTTAAAAATCACTGC
TTCAATCTACTTTAAAAGAATGGTGTTTCTTTTCCTGTCTAAATTTATCCCAAATCTTCA
ATTTATATTTAGCCCTAAGGTTTAAAAGAAAAAAAAGGAAAAAAAAGGTTGTGGTTCCCC
TCTTCCCTTGCCACTCCCACCTTCTTGCATTTAGTTTGTTTTCCACTCACTGGCTCCCCA
AGCCCAGGCACCGCCTCCTGCAGGAGATGGGACAGTGCTGGCATGTCTGCTCCTCTCCTC
CGTGCTGCACAGCCTGGTGTGGGAGTCAGTTCAGATCTTGACTCTGACTTATAACATCCT
TTTAAGAAGTTTAAAAAACAAGCAACCACCTCCACCCACCCACCCCTCTCCCAAAAAAAC
GCCGTGGAAAGGGAGGCCCAGCTCTTCTGTAAAACTCTGATCAGATGGGCAGCCTCTGAA
GTCTGTGTTGTGATGGAACTGTAACCCAGCCGGCCTCCTCTAGGGAAACCCCCCAACACC
AGGCCTGTGATGGTCCCAGGGGGGCCCGCCAGCCAAAGGATGGGGGACTCGTGGGAGGAA
TTTCTCACCAGAGGCTCCCGAGGCCACAGGTTGGCGCTTCTCCCTGCAGCTATTCTAGAA
GATGTCCGGGTCATTGCAGACTAAAACCAGAGTGTCCATTTGAAATTTGATGCTCTCCTG
TCACCGCGCTCCACCCGACCAGCCAACGTGGCTCTGGGCTCCCTCTTGCCACCTCGGTGC
AGCAGGCCTTCATCAGCACGGTCTGACCCTCTGGCATTCTCCACTGTACCGGTACAAGCC
TGGGGTTGCTGGCACCTAGCTGGCCCTGCCTTCGGAGCGTCCGGCCGGCCCAACCAAGGA
ACAGGATGGCCTTCTCCTCCCTCTGGACTCACGGCCTTCGCAGAGTCAGGATCTACTCGA
AGCTCGCTCAGTAATATCCTTTACATGTTTTATATTGTTTTGACTGCCTTTTTTTGTAGA
AATAAAAATTGACCGTAGAATTTATCATCAGATGAACTTGTAAAGATTTGAATGTTAATG
TCTTCTCAAAGCAAGTGGCACTGTCCCTGAAATAGTAGTGAGTCCTTGTCACTGACACCC
AGAGGGAGCCAGTGGTCCAAGCACTGGGTGTCACCAACTCCACTTCTGCCACGGGGACTT
CCCTTCTGGGTTCTCAGGGGGCTAGATCCTGTGGAGATAACTTAAACTCTGCTTTCTGTT
TTAGTTTTCCTTCTATAACTTGAGGTCTTTCTGGGGCTTGCAGACCTGTGAGGCAGCTTG
GCTTCATCTGTGCAGAAGTGGGTGTGGTGGTGGTTAGGCCTTATGACCTTGTGTAGTTGT
GCAGGCGTGGGGCCTACGGTGTGTCATGAACTCAGCTTCCTTAGTCCTAGGTACGTGAGA
GGCAGGTTCTGGAGACTCCTATGCCCCTGGGATGGCAGGGGCGCTGGGCCAGCAGTCCAC
ACCTGTCTCTTCATTAGCAGAAAGGTGATGATGGACTTTATTTCACCCACACGCAGATTT
GTAATAAAATGCCAAATTCTGTCAGATGCTATCCAGACAAGCCACCATCTGTTCTCGTTG
CTTCTCTGAATCCAGAAATGTTGCCATCCTTGGAAACTGTCCATTGCTTCGTATTTCCAC
CAGCGTAAATCTGCCCGCCTGTCGCACCCTCCCTTCTCCGCTCGCCACTGGGAGGTCGTC
CACCCTGGTCAAAGCTGGCAGCCCCTCGGGGACTCATACCCTGGCCTTATCAGGGCAGTG
GGTGGTCCCCGCTCCCACCTGGTGCCTGCTCCGGCAGCAGGCTGAGGCCGAGGAGCTCTT
GTGGGCAGTCACCAAGCCCTCGGGCAGGCATGGAGCTTGCTGGGGGTGGCCTTGCTACTG
AGCCCAGTCAGCTGGGTCCTCCAGAGCAGGGGAGAGCTGGCCAGCAGCCCACTGACCGGG
CCCACTCAGGAATTCACACTCCCGGGTGGGGTTCCTCGAAGCACGCCCAGTCCCCCGCCC
CTCCCCCCTTGGTGGGGACTAGGCTTTCTAAGATGCTGCGATCCGCTCTGCTGCCCTTAA
TAAAAATGCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAGCACCAGAGCCAAGATGGCGGCCAGCAGGAGGCTGATGAAGGAGCTTGAAGAAAT
CCGCAAATGTGGGATGAAAAACTTCCGTAACATCCAGGTTGATGAAGCTAATTTATTGAC
TTGGCAAGGGCTTATTGTTCCTGACAACCCTCCATATGATAAGGGGGCCTTCAGAATTGA
AATCAACTTTCCAGCAGAGTACCCATTCAAACCACCGAAGATCACGTTTAAAACGAAGAT
CTATCACCCCAACATCGATGAAAAGGGGCAGGTCTGCCTGCCGGTAATTAGTGCTGAAAA
CTGGAAGCCAGCAACCAAAACCGACCAAGTCATCCAGTCCCTTATAGCGCTGGTGAACGA
CCCCCAGCCCGAGCACCCGCTCCGGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTAA
AAAATTCTGTAAGAATGCTGAAGAGTTTACAAAGAAATATGGGGAAAAGCGACCTGTGGA
CTAAAATCTGCCGTGATTGATTCCAGCGAGTGTGAGCAGAGACCCCGAGCAGTGCATTCA
GACACCCCGCAAAGCAGGACTCTGTGGAAAATTGACATGTGCCACCGCCTGGCGTCTGCT
TGTGGCAGTTACTAACTTTCTACAGTTTTCTTAATCAGAAGTGGTCTAGGTAACCTGTAA
AGAAAGGATTAAAAATTTAAGATGTTCTAAAAAAAATTTCTTTGTTTTAAAAATCACTGC
TTCAATCTACTTTAAAAGAATGGTGTTTCTTTTCCTGTCTAAATTTATCCCAAATCTTCA
ATTTATATTTAGCCCTAAGGTTTAAAAGAAAAAAAAGGAAAAAAAAGGTTGTGGTTCCCC
TCTTCCCTTGCCACTCCCACCTTCTTGCATTTAGTTTGTTTTCCACTCACTGGCTCCCCA
AGCCCAGGCACCGCCTCCTGCAGGAGATGGGACAGTGCTGGCATGTCTGCTCCTCTCCTC
CGTGCTGCACAGCCTGGTGTGGGAGTCAGTTCAGATCTTGACTCTGACTTATAACATCCT
TTTAAGAAGTTTAAAAAACAAGCAACCACCTCCACCCACCCACCCCTCTCCCAAAAAAAC
GCCGTGGAAAGGGAGGCCCAGCTCTTCTGTAAAACTCTGATCAGATGGGCAGCCTCTGAA
GTCTGTGTTGTGATGGAACTGTAACCCAGCCGGCCTCCTCTAGGGAAACCCCCCAACACC
AGGCCTGTGATGGTCCCAGGGGGGCCCGCCAGCCAAAGGATGGGGGACTCGTGGGAGGAA
TTTCTCACCAGAGGCTCCCGAGGCCACAGGTTGGCGCTTCTCCCTGCAGCTATTCTAGAA
GATGTCCGGGTCATTGCAGACTAAAACCAGAGTGTCCATTTGAAATTTGATGCTCTCCTG
TCACCGCGCTCCACCCGACCAGCCAACGTGGCTCTGGGCTCCCTCTTGCCACCTCGGTGC
AGCAGGCCTTCATCAGCACGGTCTGACCCTCTGGCATTCTCCACTGTACCGGTACAAGCC
TGGGGTTGCTGGCACCTAGCTGGCCCTGCCTTCGGAGCGTCCGGCCGGCCCAACCAAGGA
ACAGGATGGCCTTCTCCTCCCTCTGGACTCACGGCCTTCGCAGAGTCAGGATCTACTCGA
AGCTCGCTCAGTAATATCCTTTACATGTTTTATATTGTTTTGACTGCCTTTTTTTGTAGA
AATAAAAATTGACCGTAGAATTTATCATCAGATGAACTTGTAAAGATTTGAATGTTAATG
TCTTCTCAAAGCAAGTGGCACTGTCCCTGAAATAGTAGTGAGTCCTTGTCACTGACACCC
AGAGGGAGCCAGTGGTCCAAGCACTGGGTGTCACCAACTCCACTTCTGCCACGGGGACTT
CCCTTCTGGGTTCTCAGGGGGCTAGATCCTGTGGAGATAACTTAAACTCTGCTTTCTGTT
TTAGTTTTCCTTCTATAACTTGAGGTCTTTCTGGGGCTTGCAGACCTGTGAGGCAGCTTG
GCTTCATCTGTGCAGAAGTGGGTGTGGTGGTGGTTAGGCCTTATGACCTTGTGTAGTTGT
GCAGGCGTGGGGCCTACGGTGTGTCATGAACTCAGCTTCCTTAGTCCTAGGTACGTGAGA
GGCAGGTTCTGGAGACTCCTATGCCCCTGGGATGGCAGGGGCGCTGGGCCAGCAGTCCAC
ACCTGTCTCTTCATTAGCAGAAAGGTGATGATGGACTTTATTTCACCCACACGCAGATTT
GTAATAAAATGCCAAATTCTGTCAGATGCTATCCAGACAAGCCACCATCTGTTCTCGTTG
CTTCTCTGAATCCAGAAATGTTGCCATCCTTGGAAACTGTCCATTGCTTCGTATTTCCAC
CAGCGTAAATCTGCCCGCCTGTCGCACCCTCCCTTCTCCGCTCGCCACTGGGAGGTCGTC
CACCCTGGTCAAAGCTGGCAGCCCCTCGGGGACTCATACCCTGGCCTTATCAGGGCAGTG
GGTGGTCCCCGCTCCCACCTGGTGCCTGCTCCGGCAGCAGGCTGAGGCCGAGGAGCTCTT
GTGGGCAGTCACCAAGCCCTCGGGCAGGCATGGAGCTTGCTGGGGGTGGCCTTGCTACTG
AGCCCAGTCAGCTGGGTCCTCCAGAGCAGGGGAGAGCTGGCCAGCAGCCCACTGACCGGG
CCCACTCAGGAATTCACACTCCCGGGTGGGGTTCCTCGAAGCACGCCCAGTCCCCCGCCC
CTCCCCCCTTGGTGGGGACTAGGCTTTCTAAGATGCTGCGATCCGCTCTGCTGCCCTTAA
TAAAAATGCTCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5ZKN7_CHICK

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5ZKN7_CHICK

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               328-918, gnl|bosTau2|chr17 (45412677-45413264)
               

               
               328-918, gnl|Hg17|chr22 (20300356-20300949)
               

               
               328-918, gnl|Mm7|chr16 (16704017-16703473)
               


               
               1544-2013, gnl|bosTau2|chr17 (45413781-45414243)
               

               
               1544-2013, gnl|Hg17|chr22 (20301592-20302094)
               

               
               1544-2013, gnl|Mm7|chr16 (16702875-16702446)
               


               
               2174-2427, gnl|bosTau2|chr17 (45414324-45414582)
               

               
               2174-2427, gnl|Hg17|chr22 (20302252-20302496)
               

               
               2174-2427, gnl|Mm7|chr16 (16702269-16702050)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               328-918, gnl|bosTau2|chr17 (45412677-45413264)
               

               
               328-918, gnl|Hg17|chr22 (20300356-20300949)
               

               
               328-918, gnl|Mm7|chr16 (16704017-16703473)
               


               
               1544-2013, gnl|bosTau2|chr17 (45413781-45414243)
               

               
               1544-2013, gnl|Hg17|chr22 (20301592-20302094)
               

               
               1544-2013, gnl|Mm7|chr16 (16702875-16702446)
               


               
               2174-2427, gnl|bosTau2|chr17 (45414324-45414582)
               

               
               2174-2427, gnl|Hg17|chr22 (20302252-20302496)
               

               
               2174-2427, gnl|Mm7|chr16 (16702269-16702050)

Expressed library(ies): 58 entry(ies)

More info

Expressed library(ies): 58 entry(ies)

Help | Less info


               
               cje (1.48711)
               

               
               amn (0.835422)
               

               
               ill (0.702371)
               

               
               cst (0.700182)
               

               
               cki (0.660939)
               

               
               bla (0.621736)
               

               
               cte (0.58548)
               

               
               nlu (0.575043)
               

               
               pro (0.512033)
               

               
               cbe (0.478469)
               

               
               cag (0.453583)
               

               
               lun (0.451467)
               

               
               jej (0.395687)
               

               
               col (0.390016)
               

               
               ova (0.387397)
               

               
               sin (0.349895)
               

               
               cut (0.339847)
               

               
               nco (0.323468)
               

               
               cli (0.305623)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 58 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (1.48711)
               

               
               amn (0.835422)
               

               
               ill (0.702371)
               

               
               cst (0.700182)
               

               
               cki (0.660939)
               

               
               bla (0.621736)
               

               
               cte (0.58548)
               

               
               nlu (0.575043)
               

               
               pro (0.512033)
               

               
               cbe (0.478469)
               

               
               cag (0.453583)
               

               
               lun (0.451467)
               

               
               jej (0.395687)
               

               
               col (0.390016)
               

               
               ova (0.387397)
               

               
               sin (0.349895)
               

               
               cut (0.339847)
               

               
               nco (0.323468)
               

               
               cli (0.305623)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	328-918, gnl\|bosTau2\|chr17 (45412677-45413264)
	328-918, gnl\|Hg17\|chr22 (20300356-20300949)
	328-918, gnl\|Mm7\|chr16 (16704017-16703473)

	1544-2013, gnl\|bosTau2\|chr17 (45413781-45414243)
	1544-2013, gnl\|Hg17\|chr22 (20301592-20302094)
	1544-2013, gnl\|Mm7\|chr16 (16702875-16702446)

	2174-2427, gnl\|bosTau2\|chr17 (45414324-45414582)
	2174-2427, gnl\|Hg17\|chr22 (20302252-20302496)
	2174-2427, gnl\|Mm7\|chr16 (16702269-16702050)

	cje (1.48711)
	amn (0.835422)
	ill (0.702371)
	cst (0.700182)
	cki (0.660939)
	bla (0.621736)
	cte (0.58548)
	nlu (0.575043)
	pro (0.512033)
	cbe (0.478469)
	cag (0.453583)
	lun (0.451467)
	jej (0.395687)
	col (0.390016)
	ova (0.387397)
	sin (0.349895)
	cut (0.339847)
	nco (0.323468)
	cli (0.305623)
	ski (0.29347)
	lin (0.291206)
	cga (0.279096)
	che (0.272628)
	cov (0.264306)
	eep (0.245128)
	med (0.232504)
	ecc (0.23007)
	jca (0.22792)
	spc (0.226732)
	nms (0.213858)
	mas (0.210305)
	hea (0.204499)
	fcc (0.197785)
	cmu (0.186393)
	nep (0.183925)
	rec (0.17307)
	duo (0.172801)
	fhi (0.169578)
	nje (0.16592)
	csp (0.161186)
	tbr (0.154178)
	eli (0.151814)
	fat (0.147427)
	hyp (0.142837)
	csk (0.140746)
	hlv (0.139256)
	nca (0.136874)
	ste (0.135208)
	nmm (0.132802)
	kid (0.129735)
	sug (0.127291)
	thg (0.126791)
	clu (0.119646)
	pgl (0.118483)
	ebs (0.118301)
	cty (0.10408)
	nbm (0.0993246)
	ldo (0.0970026)