Non-Coding RNA Search

Ss1.1-Mixc-0035m13.3

Sequence:


               
               GGACCTGCGCGCCGTCTACGAGGCCATCCCCCTGTCGCCTGGCATGAGCGACCTGCTGCA
GTTCGTGAGCAAGCAGGGCGCCTGCTTTGAGGTTATTCTCATCTCGGACGCCAACACCTT
CGGCGTGGAGAGCGCGCTGCGCGCCGCCGGCCACTTCAGCCTGTTCCGCCGCATCTTCAG
CAACCCGTCGGGGCCCGACGCGCGGGGGCTGCTGGCTCTGCGGCCCTTCCACACGCACAC
CTGCGCGCGCTGCCCCGCCAACATGTGCAAGCACAAGGTGCTCAGCGACTACCTGCGCGA
GCGGGCCCACGACGGTGTGCACTTCGAGCGCCTTTTCTACGTGGGCGACGGCGCCAACGA
CTTCTGCCCCATGGGGCTGCTGGCGGGCGGCGACGTGGCCTTCCCACGCCGTGGCTACCC
CATGCACCGCCTTATCCAGGAGGCGCAGAAGGCCGAGCCCAGTTCCTTCCGCGCCAGCGT
GGTGCCCTGGGAAACGGCGGCCGACGTGCGCCTCCATCTCCAACAGGTGCTGAAGACCTG
TTGAGGACCTGGCCTGCTGGGGGCACCCGCGCGGAAAGGGGGTGAGGCGTGGGTGGGGAT
CGAAAGACAAACCTAGTTTTATTACTCCCTTTCCCTTTTGTTTCGGCATGTCCCTCTGGG
AATTTCCGGTATTGCGGGCTCGTCCACTTGGGGGCTGGGGGAGGAGGTTCGGAGCCCTCC
CCATCGATGCAGTTAACCCAGCTCGGCTGCCTCCCCCCGTTCCACTGCAGCAAATTCCAG
GGCTGCTGCACATATCTGGGCAGGCACCCGTGTGTTGCAAAAACCTTGCCTTCTAAATTG
AGAGGAAGGGGTTCACTGGCGGGAGAGAGAAGGAACATCTCCCGCTGCATTAACCGCTGC
CTTGGGTCGCATGACCTCCCTCCCCCACTATCCAGGGGGCCCAGGTCTGGAACTCCCTCC
CTCTCCCCCCCAACCCCGCGCACGCTCGCGGCCACACCGGACTCCCAGCGGAGAGAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCTGCGCGCCGTCTACGAGGCCATCCCCCTGTCGCCTGGCATGAGCGACCTGCTGCA
GTTCGTGAGCAAGCAGGGCGCCTGCTTTGAGGTTATTCTCATCTCGGACGCCAACACCTT
CGGCGTGGAGAGCGCGCTGCGCGCCGCCGGCCACTTCAGCCTGTTCCGCCGCATCTTCAG
CAACCCGTCGGGGCCCGACGCGCGGGGGCTGCTGGCTCTGCGGCCCTTCCACACGCACAC
CTGCGCGCGCTGCCCCGCCAACATGTGCAAGCACAAGGTGCTCAGCGACTACCTGCGCGA
GCGGGCCCACGACGGTGTGCACTTCGAGCGCCTTTTCTACGTGGGCGACGGCGCCAACGA
CTTCTGCCCCATGGGGCTGCTGGCGGGCGGCGACGTGGCCTTCCCACGCCGTGGCTACCC
CATGCACCGCCTTATCCAGGAGGCGCAGAAGGCCGAGCCCAGTTCCTTCCGCGCCAGCGT
GGTGCCCTGGGAAACGGCGGCCGACGTGCGCCTCCATCTCCAACAGGTGCTGAAGACCTG
TTGAGGACCTGGCCTGCTGGGGGCACCCGCGCGGAAAGGGGGTGAGGCGTGGGTGGGGAT
CGAAAGACAAACCTAGTTTTATTACTCCCTTTCCCTTTTGTTTCGGCATGTCCCTCTGGG
AATTTCCGGTATTGCGGGCTCGTCCACTTGGGGGCTGGGGGAGGAGGTTCGGAGCCCTCC
CCATCGATGCAGTTAACCCAGCTCGGCTGCCTCCCCCCGTTCCACTGCAGCAAATTCCAG
GGCTGCTGCACATATCTGGGCAGGCACCCGTGTGTTGCAAAAACCTTGCCTTCTAAATTG
AGAGGAAGGGGTTCACTGGCGGGAGAGAGAAGGAACATCTCCCGCTGCATTAACCGCTGC
CTTGGGTCGCATGACCTCCCTCCCCCACTATCCAGGGGGCCCAGGTCTGGAACTCCCTCC
CTCTCCCCCCCAACCCCGCGCACGCTCGCGGCCACACCGGACTCCCAGCGGAGAGAAATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55646797|ref|XP_511946.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55646797|ref|XP_511946.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               361-480, - strand, RNAz p=0.889354

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               361-480, - strand, RNAz p=0.889354

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1012, gnl|bosTau2|chr19 (30125038-30126075)
               

               
               2-1012, gnl|Hg17|chr17 (44657149-44656132)
               

               
               2-1012, gnl|Mm7|chr11 (95939806-95940775)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1012, gnl|bosTau2|chr19 (30125038-30126075)
               

               
               2-1012, gnl|Hg17|chr17 (44657149-44656132)
               

               
               2-1012, gnl|Mm7|chr11 (95939806-95940775)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.401016)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               ese (0.126502)

	2-1012, gnl\|bosTau2\|chr19 (30125038-30126075)
	2-1012, gnl\|Hg17\|chr17 (44657149-44656132)
	2-1012, gnl\|Mm7\|chr11 (95939806-95940775)