Ss1.1-Mixc-0035o08.3
|
TCTCGGAAGTCCGAGTCAGTGACCGGAGGCGGCGGCGGCGATCAGAAAAATCCTGCAAAA
ATGTCTCTCTACCCATCTCTTGAAGACCTGAAGGTAGACAAGGTGATCCAGGCTCAAACT
GCTTTTTCTGCAAACCCTGCCAACCCAGCAATTTTGTCTGAAGCTTCTGTTCCTGTCTCT
CAAGATGGAAATCTCTATCCTAAACTATATCCGGAGCTCTCTCAGTACATGGGCCTGAGT
TTAAATGAAGAAGAAATTCATACAAATATGGCCGTGGTCCCTGGAGCACCAGTTCAGGGG
CAGTTGGTTGCAAGACCTTCCAGCATGAACTATATGGTGGCTCCTGTAACTGGTAATGAC
GCTGGAATCCGTAGAGCAGAAATTAAGCAAGGGATTCGTGAAGTCATTTTATGTAAGGAT
CAAGATGGAAAAATTGGGCTCAGGCTTAAATCAGTAGATAATGGCATATTTGTTCAGCTT
GTTCAGGCAAATTCTCCAGCCTCATTAGTTGGGCTGCGATTCGGGGACCAGGTGCTCCAG
ATCAACGGGGAGAACTGTGCAGGCTGGAGCTCGGACCGGGCCCACAAGGTGCTCAAGCAA
GCCTTTGGAGAGAAAATTACCATGACCATTCGGGACCGGCCCTTTGAACGGACAGTTACC
ATGCATAAGGACAGTACTGGACATGTTGGCTTTATCTTCAAAAACGGGAAGATCACCTCC
ATAGTGAAGGACAGTTCTGCAGCCAGAAACGGCCTTCTCACAGAACACAGCATCTGCGAG
GTCAATGGACAGAATGTCATTGGACTAAAGGACTCTCAGATTGCAGACATACTGTCAACA
GCTGGGAATGTCATCACTATCACAATCATGCCTGCTTTTATCTTCGAACATATTATTAAA
CGGATGGCACCCAGCATCATGAAAAGCCTGATGGATCACACCATCCCTGAGGTCTAAGAG
TCGCAGCAGCACAGTGGAAACGGTGCCAAGCTTCTCCATGCGACCTCTTCAGTGACTTCA
CTTTCTCTTATGCACATGAAGCTTTCGAGGAGCCAGAGAGCATATGCTGCGCGAGGGCCT
TCCTGTTCCGGCAGGCTGGCCTCTTAACTGTTTCATCTGATGTCTTGTTCAGACTTCAAG
ATAGTTGTAGCCTTAGCCTAGTTTCAGAGAGGTGAAAACTTTGATTTACTGAAACTTTTG
TAGCTTAGTTTCTTTACTGGAAACCTGATGCTCTTTCAAGCCATGGGATTAGATTAGGAC
GCCTGGCGCAAGCTCGGCTGTGTGTAGAACCCCTCACCGTTGCCTAGGCATCAAGCATTG
CTGTTCCTAGTACTTCAAGTCTAGGGTGTATTTTCCATTTGTACTGTGTTCTCTAGCACA
TTTAGAAGGATTACTTTCTTTTCCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTAAACACACCAGTTAAGTAACCTAATGTGGGTTTCATTCCATGGAGGCATCACAGTGGC
TGTAAGCTGCAGACCTTTCAACTACCTTTACTTACTCTGCTTGAACTGTCGCCTTAACTA
CATTAAGCATCTAGAATGAAAGCCAAACTTACTCTTGCTGCCTTTCTAAAACCCCAAATG
CAGTTCTTCAGCTGAAATGCACACTAGCCCAGAACAGTGTAATGTACATATAGCTACATC
AGCTACATAATGTAGCTGAGCTTACTCAGCATAGCTGCCTAGTTGCATCTGAGATTTTCT
AGTCATTGTGTAATGGCAACTTCTTTCTTCTGACACTTACTAGTTATCACTTTCTGAGAA
ATGAGTCACTATATATCTATTAAATGTAAAAATTCTTGTACTAAGTAGGACAAACCTCAA
CTCCCTTTTTCATCTGTAGACAAGTGGGATAATAGCCAATGTTGGCATTTATGTATAAAC
CTGTATCCTAGCTGCTTTGGGACGGGCTTGGAATGTTTTCCTGATCAGCTGTTCTATTTC
CCGACTTCTCTGTAAACAAAATGACAATGGCACTTCTTCATCCTTTCTTTGTTGGTTTCT
GCCTATTTTAATTAAAAATAAAGTTAAATTTTAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCTCGGAAGTCCGAGTCAGTGACCGGAGGCGGCGGCGGCGATCAGAAAAATCCTGCAAAA
ATGTCTCTCTACCCATCTCTTGAAGACCTGAAGGTAGACAAGGTGATCCAGGCTCAAACT
GCTTTTTCTGCAAACCCTGCCAACCCAGCAATTTTGTCTGAAGCTTCTGTTCCTGTCTCT
CAAGATGGAAATCTCTATCCTAAACTATATCCGGAGCTCTCTCAGTACATGGGCCTGAGT
TTAAATGAAGAAGAAATTCATACAAATATGGCCGTGGTCCCTGGAGCACCAGTTCAGGGG
CAGTTGGTTGCAAGACCTTCCAGCATGAACTATATGGTGGCTCCTGTAACTGGTAATGAC
GCTGGAATCCGTAGAGCAGAAATTAAGCAAGGGATTCGTGAAGTCATTTTATGTAAGGAT
CAAGATGGAAAAATTGGGCTCAGGCTTAAATCAGTAGATAATGGCATATTTGTTCAGCTT
GTTCAGGCAAATTCTCCAGCCTCATTAGTTGGGCTGCGATTCGGGGACCAGGTGCTCCAG
ATCAACGGGGAGAACTGTGCAGGCTGGAGCTCGGACCGGGCCCACAAGGTGCTCAAGCAA
GCCTTTGGAGAGAAAATTACCATGACCATTCGGGACCGGCCCTTTGAACGGACAGTTACC
ATGCATAAGGACAGTACTGGACATGTTGGCTTTATCTTCAAAAACGGGAAGATCACCTCC
ATAGTGAAGGACAGTTCTGCAGCCAGAAACGGCCTTCTCACAGAACACAGCATCTGCGAG
GTCAATGGACAGAATGTCATTGGACTAAAGGACTCTCAGATTGCAGACATACTGTCAACA
GCTGGGAATGTCATCACTATCACAATCATGCCTGCTTTTATCTTCGAACATATTATTAAA
CGGATGGCACCCAGCATCATGAAAAGCCTGATGGATCACACCATCCCTGAGGTCTAAGAG
TCGCAGCAGCACAGTGGAAACGGTGCCAAGCTTCTCCATGCGACCTCTTCAGTGACTTCA
CTTTCTCTTATGCACATGAAGCTTTCGAGGAGCCAGAGAGCATATGCTGCGCGAGGGCCT
TCCTGTTCCGGCAGGCTGGCCTCTTAACTGTTTCATCTGATGTCTTGTTCAGACTTCAAG
ATAGTTGTAGCCTTAGCCTAGTTTCAGAGAGGTGAAAACTTTGATTTACTGAAACTTTTG
TAGCTTAGTTTCTTTACTGGAAACCTGATGCTCTTTCAAGCCATGGGATTAGATTAGGAC
GCCTGGCGCAAGCTCGGCTGTGTGTAGAACCCCTCACCGTTGCCTAGGCATCAAGCATTG
CTGTTCCTAGTACTTCAAGTCTAGGGTGTATTTTCCATTTGTACTGTGTTCTCTAGCACA
TTTAGAAGGATTACTTTCTTTTCCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTAAACACACCAGTTAAGTAACCTAATGTGGGTTTCATTCCATGGAGGCATCACAGTGGC
TGTAAGCTGCAGACCTTTCAACTACCTTTACTTACTCTGCTTGAACTGTCGCCTTAACTA
CATTAAGCATCTAGAATGAAAGCCAAACTTACTCTTGCTGCCTTTCTAAAACCCCAAATG
CAGTTCTTCAGCTGAAATGCACACTAGCCCAGAACAGTGTAATGTACATATAGCTACATC
AGCTACATAATGTAGCTGAGCTTACTCAGCATAGCTGCCTAGTTGCATCTGAGATTTTCT
AGTCATTGTGTAATGGCAACTTCTTTCTTCTGACACTTACTAGTTATCACTTTCTGAGAA
ATGAGTCACTATATATCTATTAAATGTAAAAATTCTTGTACTAAGTAGGACAAACCTCAA
CTCCCTTTTTCATCTGTAGACAAGTGGGATAATAGCCAATGTTGGCATTTATGTATAAAC
CTGTATCCTAGCTGCTTTGGGACGGGCTTGGAATGTTTTCCTGATCAGCTGTTCTATTTC
CCGACTTCTCTGTAAACAAAATGACAATGGCACTTCTTCATCCTTTCTTTGTTGGTTTCT
GCCTATTTTAATTAAAAATAAAGTTAAATTTTAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
62-495, gnl|bosTau2|chr10 (57482152-57481735) |
|
62-495, gnl|Hg17|chrX (40507043-40506610) |
|
62-495, gnl|Mm7|chr6_random (7050288-7049878) |
| |
|
666-948, gnl|bosTau2|chr10 (57481664-57481371) |
|
666-948, gnl|Hg17|chrX (40506442-40506167) |
|
666-948, gnl|Mm7|chr10 (95431755-95431476) |
| |
|
1513-1657, gnl|bosTau2|chr14 (13061541-13061393) |
|
1513-1657, gnl|canFam2|chr29 (12373994-12374128) |
|
1513-1657, gnl|dasNov1|scaffold_206328 (416-285) |
|
1513-1657, gnl|echTel1|scaffold_309753 (70927-70796) |
|
1513-1657, gnl|hg17|chr8 (59657398-59657533) |
|
1513-1657, gnl|Hg17|chr8 (59657407-59657558) |
|
1513-1657, gnl|loxAfr1|scaffold_11936 (46380-46249) |
|
1513-1657, gnl|mm7|chr4 (6322260-6322393) |
|
1513-1657, gnl|Mm7|chr4 (6322269-6322416) |
|
1513-1657, gnl|monDom2|scaffold_4 (105064904-105064785) |
|
1513-1657, gnl|oryCun1|scaffold_195841 (64123-64255) |
|
1513-1657, gnl|panTro1|chr7 (61428250-61428385) |
|
1513-1657, gnl|rheMac2|chr8 (61217577-61217711) |
|
1513-1657, gnl|rn3|chr5 (19848665-19848799) |
| |
|
1741-2086, gnl|bosTau2|chr10 (57479971-57479637) |
|
1741-2086, gnl|Hg17|chrX (40505038-40504690) |
|
1741-2086, gnl|Mm7|chr10 (95430706-95430406) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
62-495, gnl|bosTau2|chr10 (57482152-57481735) |
|
62-495, gnl|Hg17|chrX (40507043-40506610) |
|
62-495, gnl|Mm7|chr6_random (7050288-7049878) |
| |
|
666-948, gnl|bosTau2|chr10 (57481664-57481371) |
|
666-948, gnl|Hg17|chrX (40506442-40506167) |
|
666-948, gnl|Mm7|chr10 (95431755-95431476) |
| |
|
1513-1657, gnl|bosTau2|chr14 (13061541-13061393) |
|
1513-1657, gnl|canFam2|chr29 (12373994-12374128) |
|
1513-1657, gnl|dasNov1|scaffold_206328 (416-285) |
|
1513-1657, gnl|echTel1|scaffold_309753 (70927-70796) |
|
1513-1657, gnl|hg17|chr8 (59657398-59657533) |
|
1513-1657, gnl|Hg17|chr8 (59657407-59657558) |
|
1513-1657, gnl|loxAfr1|scaffold_11936 (46380-46249) |
|
1513-1657, gnl|mm7|chr4 (6322260-6322393) |
|
1513-1657, gnl|Mm7|chr4 (6322269-6322416) |
|
1513-1657, gnl|monDom2|scaffold_4 (105064904-105064785) |
|
1513-1657, gnl|oryCun1|scaffold_195841 (64123-64255) |
|
1513-1657, gnl|panTro1|chr7 (61428250-61428385) |
|
1513-1657, gnl|rheMac2|chr8 (61217577-61217711) |
|
1513-1657, gnl|rn3|chr5 (19848665-19848799) |
| |
|
1741-2086, gnl|bosTau2|chr10 (57479971-57479637) |
|
1741-2086, gnl|Hg17|chrX (40505038-40504690) |
|
1741-2086, gnl|Mm7|chr10 (95430706-95430406) |
|
cbr (2.17558) |
|
cbl (1.72196) |
|
cty (1.5612) |
|
pro (1.5361) |
|
sug (1.52749) |
|
mga (1.44185) |
|
rec (1.03842) |
|
liv (0.877706) |
|
fat (0.737137) |
|
eep (0.735384) |
|
ski (0.733676) |
|
sag (0.730861) |
|
spc (0.680195) |
|
tes (0.623441) |
|
fcc (0.593354) |
|
lin (0.582411) |
|
ova (0.516529) |
|
bla (0.497389) |
|
ldo (0.485013) |
|
clu (0.478583) |
|
fco (0.471624) |
|
spl (0.429553) |
|
nca (0.410621) |
|
hea (0.408998) |
|
fli (0.405762) |
|
ste (0.405625) |
|
pla (0.401016) |
|
elu (0.385356) |
|
nlu (0.383362) |
|
thg (0.380373) |
|
gul (0.355177) |
|
jca (0.34188) |
|
nco (0.323468) |
|
lnt (0.284616) |
|
hlv (0.278513) |
|
fce (0.271592) |
|
lyg (0.266205) |
|
kid (0.259471) |
|
ret (0.257467) |
|
tra (0.246184) |
|
mgp (0.230681) |
|
mas (0.210305) |
|
eje (0.197668) |
|
fty (0.17584) |
|
ill (0.175593) |
|
sin (0.174948) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
cje (0.165235) |
|
csp (0.161186) |
|
cag (0.151194) |
|
lun (0.150489) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
ssp (0.13552) |
|
ute (0.132784) |
|
ese (0.126502) |
|
pgl (0.118483) |
|
med (0.116252) |
|
ecc (0.115035) |
|
jej (0.0989218) |
|
cbr (2.17558) |
|
cbl (1.72196) |
|
cty (1.5612) |
|
pro (1.5361) |
|
sug (1.52749) |
|
mga (1.44185) |
|
rec (1.03842) |
|
liv (0.877706) |
|
fat (0.737137) |
|
eep (0.735384) |
|
ski (0.733676) |
|
sag (0.730861) |
|
spc (0.680195) |
|
tes (0.623441) |
|
fcc (0.593354) |
|
lin (0.582411) |
|
ova (0.516529) |
|
bla (0.497389) |
|
ldo (0.485013) |
|
clu (0.478583) |
|
fco (0.471624) |
|
spl (0.429553) |
|
nca (0.410621) |
|
hea (0.408998) |
|
fli (0.405762) |
|
ste (0.405625) |
|
pla (0.401016) |
|
elu (0.385356) |
|
nlu (0.383362) |
|
thg (0.380373) |
|
gul (0.355177) |
|
jca (0.34188) |
|
nco (0.323468) |
|
lnt (0.284616) |
|
hlv (0.278513) |
|
fce (0.271592) |
|
lyg (0.266205) |
|
kid (0.259471) |
|
ret (0.257467) |
|
tra (0.246184) |
|
mgp (0.230681) |
|
mas (0.210305) |
|
eje (0.197668) |
|
fty (0.17584) |
|
ill (0.175593) |
|
sin (0.174948) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
cje (0.165235) |
|
csp (0.161186) |
|
cag (0.151194) |
|
lun (0.150489) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
ssp (0.13552) |
|
ute (0.132784) |
|
ese (0.126502) |
|
pgl (0.118483) |
|
med (0.116252) |
|
ecc (0.115035) |
|
jej (0.0989218) |
